Wall clock time and date at job start Wed Apr 1 2020 00:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.47020 * 2 1 4 4 N 1.46900 * 109.46800 * 119.99968 * 2 1 3 5 5 C 1.46905 * 110.99852 * 275.00075 * 4 2 1 6 6 H 1.09000 * 110.88497 * 37.42489 * 5 4 2 7 7 C 1.55405 * 111.07106 * 161.21207 * 5 4 2 8 8 C 1.54325 * 102.82616 * 153.48410 * 7 5 4 9 9 N 1.47018 * 107.40412 * 337.97548 * 8 7 5 10 10 C 1.34777 * 125.64981 * 178.82520 * 9 8 7 11 11 O 1.21275 * 120.00167 * 180.02562 * 10 9 8 12 12 C 1.50694 * 119.99872 * 0.02817 * 10 9 8 13 13 S 1.81005 * 109.47459 * 179.97438 * 12 10 9 14 14 C 1.76198 * 100.00346 * 180.02562 * 13 12 10 15 15 H 1.08006 * 119.99544 * 359.97438 * 14 13 12 16 16 C 1.38788 * 119.99998 * 180.02562 * 14 13 12 17 17 N 1.31632 * 120.00249 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00208 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47312 * 89.99436 * 18 16 14 20 20 H 1.48494 * 109.47245 * 209.99735 * 18 16 14 21 21 H 1.48502 * 109.46680 * 329.99850 * 18 16 14 22 22 C 1.47426 * 108.70517 * 358.86539 * 9 8 7 23 23 C 1.50697 * 109.47244 * 239.99663 * 2 1 3 24 24 O 1.21280 * 120.00227 * 240.00372 * 23 2 1 25 25 N 1.34778 * 119.99760 * 59.99890 * 23 2 1 26 26 C 1.46502 * 119.99833 * 179.97438 * 25 23 2 27 27 C 1.53001 * 117.50140 * 223.62527 * 26 25 23 28 28 C 1.53002 * 60.00061 * 252.51045 * 27 26 25 29 29 H 1.08997 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46771 * 300.00337 * 1 2 3 31 31 H 1.09004 * 109.46591 * 60.00322 * 1 2 3 32 32 H 1.00900 * 111.00048 * 38.95055 * 4 2 1 33 33 H 1.09000 * 110.69068 * 35.19668 * 7 5 4 34 34 H 1.09002 * 110.85092 * 271.84662 * 7 5 4 35 35 H 1.09002 * 109.88192 * 218.47989 * 8 7 5 36 36 H 1.09000 * 109.88128 * 97.46841 * 8 7 5 37 37 H 1.08997 * 109.47569 * 299.99781 * 12 10 9 38 38 H 1.09007 * 109.47441 * 59.99852 * 12 10 9 39 39 H 0.97002 * 120.00418 * 180.02562 * 17 16 14 40 40 H 1.08999 * 110.36956 * 142.96999 * 22 9 8 41 41 H 1.09001 * 110.36709 * 265.18192 * 22 9 8 42 42 H 0.96997 * 120.00080 * 0.02562 * 25 23 2 43 43 H 1.09001 * 115.55365 * 9.33558 * 26 25 23 44 44 H 1.08998 * 117.49527 * 0.02562 * 27 26 25 45 45 H 1.08997 * 117.49877 * 145.01921 * 27 26 25 46 46 H 1.08997 * 117.49614 * 252.50897 * 28 27 26 47 47 H 1.08997 * 117.51783 * 107.47783 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 1 1.2423 0.9170 2.3366 7 6 2.1352 -0.5636 3.6864 8 6 2.8619 0.4170 4.6308 9 7 3.6256 1.3516 3.7914 10 6 4.3780 2.3758 4.2403 11 8 4.9670 3.0861 3.4534 12 6 4.4874 2.6382 5.7202 13 16 5.5603 4.0685 6.0018 14 6 5.5122 4.1456 7.7614 15 1 4.9296 3.4261 8.3176 16 6 6.2220 5.1314 8.4325 17 7 6.9316 6.0086 7.7545 18 14 6.1705 5.2136 10.2980 19 1 7.2692 4.3879 10.8605 20 1 6.3361 6.6227 10.7362 21 1 4.8651 4.6953 10.7804 22 6 3.4314 0.9837 2.3770 23 6 2.0324 -0.7105 -1.2304 24 8 2.7297 -1.6966 -1.1191 25 7 1.7068 -0.2500 -2.4545 26 6 2.1956 -0.9404 -3.6507 27 6 2.7324 -0.0776 -4.7946 28 6 1.3832 -0.7848 -4.9378 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8901 32 1 1.4495 -1.4979 1.4101 33 1 2.7081 -1.4836 3.5706 34 1 1.1303 -0.7770 4.0509 35 1 3.5392 -0.1317 5.2852 36 1 2.1332 0.9655 5.2277 37 1 3.4969 2.8409 6.1275 38 1 4.9113 1.7637 6.2140 39 1 7.4281 6.6974 8.2236 40 1 3.3764 1.8781 1.7564 41 1 4.2411 0.3373 2.0386 42 1 1.1495 0.5388 -2.5435 43 1 2.6799 -1.9008 -3.4743 44 1 2.7222 1.0036 -4.6570 45 1 3.5701 -0.4703 -5.3708 46 1 1.3333 -1.6427 -5.6083 47 1 0.4848 -0.1691 -4.8945 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317053738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:33 Heat of formation + Delta-G solvation = -64.540095 kcal Electronic energy + Delta-G solvation = -26614.753902 eV Core-core repulsion = 22730.486840 eV Total energy + Delta-G solvation = -3884.267062 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25559 -40.79726 -38.94656 -38.00622 -36.45434 -34.58995 -34.00861 -32.67041 -30.92411 -30.33691 -28.17764 -27.58196 -25.73691 -24.17722 -23.27196 -22.55152 -21.80434 -21.39393 -20.64862 -19.62796 -18.33758 -17.92564 -17.86118 -17.51291 -16.88620 -16.58742 -16.42290 -16.00435 -15.80984 -15.56895 -15.31606 -15.03150 -14.77912 -14.59459 -14.34597 -14.23049 -13.87936 -13.69041 -13.59170 -13.40412 -13.17793 -13.13678 -12.89027 -12.63276 -12.60094 -12.54956 -12.44470 -12.28859 -12.02725 -11.82449 -11.73766 -11.46830 -11.14480 -11.02306 -10.80043 -10.29048 -9.75061 -9.72315 -9.44994 -8.68917 -8.34749 -6.13917 1.22701 1.42966 1.44472 1.53758 1.56049 1.60830 1.92688 2.11548 2.27085 2.98913 2.99375 3.11614 3.21043 3.42632 3.62490 3.71286 3.82843 3.89319 3.97639 4.05769 4.06593 4.08994 4.14088 4.21330 4.32071 4.39312 4.43666 4.63600 4.68151 4.75787 4.76260 4.79668 4.83713 4.90411 4.96784 5.02482 5.13767 5.19775 5.20074 5.30370 5.41377 5.53490 5.89075 6.19545 6.30935 6.40437 6.57775 7.06127 7.08613 7.29252 8.74598 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024411 B = 0.001799 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.728830 B =15556.149543 C =16306.439463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 H 0.108 0.892 4 N -0.668 5.668 5 C 0.090 3.910 6 H 0.082 0.918 7 C -0.116 4.116 8 C 0.092 3.908 9 N -0.616 5.616 10 C 0.545 3.455 11 O -0.569 6.569 12 C -0.118 4.118 13 S -0.153 6.153 14 C -0.546 4.546 15 H 0.084 0.916 16 C 0.013 3.987 17 N -0.912 5.912 18 Si 1.000 3.000 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.256 1.256 22 C 0.113 3.887 23 C 0.518 3.482 24 O -0.566 6.566 25 N -0.694 5.694 26 C 0.054 3.946 27 C -0.194 4.194 28 C -0.168 4.168 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.362 0.638 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.271 0.729 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.414 0.586 43 H 0.114 0.886 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.111 0.889 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.350 -17.168 -19.410 33.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.043 4.043 3 H 0.126 0.874 4 N -0.302 5.302 5 C -0.021 4.021 6 H 0.100 0.900 7 C -0.154 4.154 8 C -0.030 4.030 9 N -0.351 5.351 10 C 0.333 3.667 11 O -0.448 6.448 12 C -0.269 4.269 13 S 0.074 5.926 14 C -0.694 4.694 15 H 0.102 0.898 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.822 3.178 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.180 1.180 22 C -0.011 4.011 23 C 0.305 3.695 24 O -0.443 6.443 25 N -0.346 5.346 26 C -0.052 4.052 27 C -0.232 4.232 28 C -0.206 4.206 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.184 0.816 33 H 0.108 0.892 34 H 0.137 0.863 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.251 0.749 43 H 0.132 0.868 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.130 0.870 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -19.185 -16.580 -20.598 32.669 hybrid contribution -1.019 0.080 1.753 2.029 sum -20.205 -16.500 -18.845 32.181 Atomic orbital electron populations 1.22413 0.92071 1.03686 1.04805 1.21528 0.96047 0.98284 0.88467 0.87410 1.59740 1.59002 1.09375 1.02077 1.22561 0.94883 0.94273 0.90350 0.89987 1.22828 1.02940 0.97633 0.92000 1.22342 0.95391 0.90961 0.94345 1.48360 1.48256 1.29664 1.08840 1.19821 0.77777 0.79168 0.89908 1.90683 1.46905 1.48832 1.58400 1.23292 1.05150 1.03536 0.94954 1.85613 1.62186 1.35775 1.08993 1.23196 1.35870 1.19129 0.91179 0.89799 1.26151 0.93751 0.93914 1.05339 1.70190 1.29638 1.16606 1.38373 0.84928 0.79367 0.77800 0.75718 1.19364 1.20251 1.18021 1.22247 0.98681 0.98537 0.81639 1.21027 0.79246 0.84164 0.85080 1.90688 1.38551 1.28036 1.87039 1.45309 1.53192 1.31906 1.04154 1.21579 1.04099 0.98235 0.81274 1.23487 0.98507 0.99764 1.01488 1.23443 0.95521 1.03786 0.97809 0.91473 0.90123 0.89731 0.81558 0.89250 0.86332 0.90472 0.89540 0.87177 0.87633 0.91975 0.92467 0.92259 0.74856 0.86798 0.87947 0.87845 0.87045 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 9.05 71.99 0.65 -0.36 16 2 C 0.07 0.89 2.88 44.17 0.13 1.02 16 3 H 0.11 1.38 7.76 -2.39 -0.02 1.36 16 4 N -0.67 -10.12 5.61 -465.74 -2.62 -12.74 16 5 C 0.09 1.36 3.10 46.40 0.14 1.50 16 6 H 0.08 1.01 7.24 -2.39 -0.02 0.99 16 7 C -0.12 -1.40 6.45 31.87 0.21 -1.19 16 8 C 0.09 1.71 6.48 86.73 0.56 2.27 16 9 N -0.62 -17.84 3.33 -811.80 -2.70 -20.54 16 10 C 0.54 21.91 7.87 87.66 0.69 22.60 16 11 O -0.57 -28.41 16.12 -3.01 -0.05 -28.46 16 12 C -0.12 -4.91 5.35 71.23 0.38 -4.53 16 13 S -0.15 -8.70 20.57 -56.49 -1.16 -9.86 16 14 C -0.55 -31.49 9.50 67.95 0.65 -30.84 16 15 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 16 C 0.01 0.75 5.49 84.85 0.47 1.22 16 17 N -0.91 -56.50 13.22 21.65 0.29 -56.21 16 18 Si 1.00 43.70 29.55 68.60 2.03 45.72 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 22 C 0.11 2.87 6.45 86.86 0.56 3.43 16 23 C 0.52 9.41 7.22 87.66 0.63 10.04 16 24 O -0.57 -15.80 16.00 -3.03 -0.05 -15.85 16 25 N -0.69 -8.58 5.46 -442.52 -2.42 -10.99 16 26 C 0.05 0.72 6.43 44.99 0.29 1.01 16 27 C -0.19 -1.94 10.46 30.60 0.32 -1.63 16 28 C -0.17 -1.24 10.46 30.60 0.32 -0.92 16 29 H 0.07 0.42 8.13 -2.39 -0.02 0.40 16 30 H 0.08 0.37 7.45 -2.39 -0.02 0.35 16 31 H 0.08 0.23 7.56 -2.39 -0.02 0.22 16 32 H 0.36 4.41 8.27 -89.69 -0.74 3.66 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.11 4.07 8.14 -2.40 -0.02 4.05 16 38 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 39 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 40 H 0.06 1.62 8.04 -2.39 -0.02 1.61 16 41 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.41 2.54 8.25 -92.71 -0.76 1.77 16 43 H 0.11 2.07 7.40 -2.39 -0.02 2.05 16 44 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 46 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -86.51 404.14 -1.20 -87.71 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -0.52 Total: 17.58 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 5.99 Total: 3.64 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -7.44 Total: -100.48 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -0.10 Total: -44.31 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -86.51 -1.20 -87.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317053738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.169 kcal (2) G-P(sol) polarization free energy of solvation -86.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds