Wall clock time and date at job start Wed Apr 1 2020 01:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.47023 * 2 1 4 4 C 1.46899 * 110.99692 * 87.60390 * 3 2 1 5 5 C 1.52994 * 109.47376 * 283.46986 * 4 3 2 6 6 N 1.46505 * 109.47345 * 187.52532 * 5 4 3 7 7 C 1.34776 * 119.99893 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00269 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99864 * 179.97438 * 7 6 5 10 10 S 1.80995 * 109.47124 * 180.02562 * 9 7 6 11 11 C 1.76202 * 100.00110 * 180.02562 * 10 9 7 12 12 H 1.07997 * 119.99616 * 0.02562 * 11 10 9 13 13 C 1.38801 * 120.00057 * 179.97438 * 11 10 9 14 14 N 1.31626 * 120.00013 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99735 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47196 * 60.00116 * 15 13 11 17 17 H 1.48500 * 109.47007 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47118 * 300.00254 * 15 13 11 19 19 C 1.46894 * 111.00364 * 211.55652 * 3 2 1 20 20 H 1.08995 * 109.47463 * 192.43459 * 19 3 2 21 21 C 1.53004 * 109.47178 * 312.43938 * 19 3 2 22 22 C 1.50709 * 109.46874 * 72.43523 * 19 3 2 23 23 N 1.30247 * 125.62033 * 318.10655 * 22 19 3 24 24 C 1.34478 * 108.70360 * 179.97438 * 23 22 19 25 25 C 1.34332 * 107.66658 * 0.02562 * 24 23 22 26 26 C 1.50693 * 126.44425 * 179.97438 * 25 24 23 27 27 O 1.33964 * 125.61704 * 137.79954 * 22 19 3 28 28 H 1.09007 * 109.47179 * 171.92198 * 1 2 3 29 29 H 1.09004 * 109.47270 * 291.91556 * 1 2 3 30 30 H 1.09002 * 109.47459 * 51.91695 * 1 2 3 31 31 H 1.08997 * 109.47591 * 120.00562 * 2 1 3 32 32 H 1.09000 * 109.47445 * 240.00523 * 2 1 3 33 33 H 1.09001 * 109.47568 * 43.47398 * 4 3 2 34 34 H 1.09005 * 109.47344 * 163.47129 * 4 3 2 35 35 H 1.08998 * 109.47658 * 307.53299 * 5 4 3 36 36 H 1.09009 * 109.47018 * 67.53025 * 5 4 3 37 37 H 0.97000 * 119.99775 * 359.97438 * 6 5 4 38 38 H 1.09000 * 109.47341 * 300.00106 * 9 7 6 39 39 H 1.09000 * 109.46482 * 59.99971 * 9 7 6 40 40 H 0.96996 * 120.00019 * 179.97438 * 14 13 11 41 41 H 1.08998 * 109.47073 * 59.99893 * 21 19 3 42 42 H 1.09003 * 109.47059 * 179.97438 * 21 19 3 43 43 H 1.08998 * 109.46691 * 299.99664 * 21 19 3 44 44 H 1.07999 * 126.16778 * 180.02562 * 24 23 22 45 45 H 1.08997 * 109.47587 * 90.01774 * 26 25 24 46 46 H 1.09002 * 109.47437 * 210.02575 * 26 25 24 47 47 H 1.09006 * 109.47323 * 330.01695 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.1410 1.9004 1.3702 5 6 0.7525 2.2524 1.9076 6 7 0.8862 2.9310 3.1992 7 6 -0.2135 3.3363 3.8645 8 8 -1.3139 3.1390 3.3943 9 6 -0.0760 4.0338 5.1933 10 16 -1.7187 4.4490 5.8297 11 6 -1.2716 5.2309 7.3441 12 1 -0.2307 5.3262 7.6158 13 6 -2.2571 5.7253 8.1873 14 7 -3.5257 5.6096 7.8558 15 14 -1.7830 6.5536 9.7930 16 1 -0.9294 7.7347 9.5076 17 1 -3.0103 6.9900 10.5061 18 1 -1.0324 5.5941 10.6422 19 6 3.2968 1.4919 -0.7177 20 1 3.7453 2.4652 -0.5184 21 6 4.2430 0.3874 -0.2423 22 6 3.0552 1.3437 -2.1979 23 7 2.2517 0.4818 -2.7528 24 6 2.2970 0.6466 -4.0866 25 6 3.1594 1.6436 -4.3451 26 6 3.5295 2.1770 -5.7050 27 8 3.6271 2.0807 -3.1594 28 1 -0.3634 -1.0175 -0.1444 29 1 -0.3634 0.3836 0.9534 30 1 -0.3634 0.6339 -0.8089 31 1 1.8934 -0.5139 0.8899 32 1 1.8934 -0.5137 -0.8900 33 1 2.5945 1.1397 2.0058 34 1 2.7669 2.7928 1.3687 35 1 0.2459 2.9108 1.2020 36 1 0.1702 1.3398 2.0353 37 1 1.7663 3.0878 3.5758 38 1 0.4307 3.3751 5.8987 39 1 0.5062 4.9464 5.0660 40 1 -4.2143 5.9548 8.4452 41 1 3.7945 -0.5858 -0.4416 42 1 5.1906 0.4665 -0.7752 43 1 4.4177 0.4947 0.8282 44 1 1.7404 0.0796 -4.8182 45 1 2.8504 2.9855 -5.9754 46 1 4.5521 2.5538 -5.6816 47 1 3.4539 1.3773 -6.4419 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317473727.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:01 Heat of formation + Delta-G solvation = -2.749955 kcal Electronic energy + Delta-G solvation = -26707.423843 eV Core-core repulsion = 22825.836203 eV Total energy + Delta-G solvation = -3881.587640 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.65844 -39.52509 -38.68206 -35.09465 -34.69287 -33.22154 -32.40880 -31.96602 -30.80973 -29.29594 -27.38434 -27.01499 -25.44644 -24.47623 -22.85635 -22.46626 -21.52100 -20.66770 -19.93894 -17.85073 -17.41700 -17.08202 -16.57677 -16.24073 -15.98205 -15.39851 -15.30533 -14.79017 -14.78341 -14.63031 -14.25665 -13.95439 -13.80413 -13.68721 -13.40365 -13.16718 -13.09437 -12.80232 -12.65828 -12.60666 -12.43840 -12.26768 -11.88718 -11.81753 -11.60322 -11.42281 -11.28477 -11.02580 -11.02525 -10.91107 -10.75454 -10.33748 -9.80494 -9.37039 -9.04356 -9.04000 -8.79760 -8.75112 -8.21078 -6.47452 -6.19386 -3.89884 1.09602 2.13254 2.39343 3.00788 3.15267 3.24819 3.27217 3.30461 3.52580 3.64869 3.95187 4.22534 4.30611 4.42936 4.50872 4.65521 4.67043 4.83703 4.88190 4.92914 4.99772 5.02402 5.15428 5.15518 5.18399 5.20986 5.24448 5.34754 5.42526 5.52586 5.57873 5.62617 5.70013 5.74246 5.82384 5.90114 5.95373 6.04184 6.14177 6.16366 6.38506 6.57066 6.65569 6.78233 7.45620 7.61122 7.74441 8.36991 8.66460 9.25613 10.87975 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026422 B = 0.001690 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.472036 B =16564.264206 C =16622.053987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 N -0.523 5.523 4 C 0.048 3.952 5 C 0.120 3.880 6 N -0.740 5.740 7 C 0.532 3.468 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.181 3.819 20 H 0.109 0.891 21 C -0.181 4.181 22 C 0.204 3.796 23 N -0.464 5.464 24 C -0.043 4.043 25 C -0.052 4.052 26 C -0.067 4.067 27 O -0.201 6.201 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.396 0.604 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.269 0.731 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.182 0.818 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.076 -11.146 -24.304 33.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.083 4.083 3 N -0.248 5.248 4 C -0.080 4.080 5 C -0.004 4.004 6 N -0.395 5.395 7 C 0.318 3.682 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.200 1.200 19 C 0.071 3.929 20 H 0.127 0.873 21 C -0.241 4.241 22 C -0.004 4.004 23 N -0.192 5.192 24 C -0.181 4.181 25 C -0.106 4.106 26 C -0.124 4.124 27 O -0.088 6.088 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.115 0.885 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.229 0.771 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.199 0.801 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 17.342 -11.555 -24.962 32.517 hybrid contribution 2.905 0.870 1.640 3.447 sum 20.247 -10.685 -23.322 32.680 Atomic orbital electron populations 1.21938 0.94476 1.01461 1.02844 1.22431 0.96903 0.87100 1.01906 1.61658 1.25036 1.23075 1.14997 1.22362 0.97630 1.00163 0.87870 1.21450 0.96055 0.98150 0.84746 1.45948 1.09321 1.62236 1.22021 1.20270 0.83912 0.78060 0.85959 1.90709 1.25687 1.54363 1.68199 1.23529 1.08304 1.02479 0.96056 1.85413 0.99411 1.75411 1.23076 1.22834 0.95516 1.44077 1.06051 0.90991 1.24987 0.94462 0.95636 0.98474 1.70007 0.99361 1.43659 1.37239 0.86227 0.77965 0.79532 0.81788 1.19962 1.20817 1.19963 1.19870 0.90222 1.01143 0.81646 0.87337 1.22514 0.99746 0.99460 1.02340 1.25919 0.92760 0.88967 0.92763 1.70350 1.18885 1.23276 1.06698 1.23122 1.01864 1.00244 0.92875 1.23451 1.00573 0.99587 0.86939 1.20262 1.03039 1.02130 0.86999 1.84358 1.57065 1.52179 1.15206 0.92624 0.92008 0.91835 0.94295 0.88476 0.93227 0.90152 0.90703 0.90695 0.77074 0.89266 0.89250 0.92137 0.90858 0.91441 0.90662 0.80137 0.89744 0.90434 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.70 37.16 0.36 -1.23 16 2 C 0.04 0.41 3.93 -3.82 -0.02 0.39 16 3 N -0.52 -4.79 4.26 -228.04 -0.97 -5.76 16 4 C 0.05 0.40 4.62 -3.83 -0.02 0.38 16 5 C 0.12 1.46 5.11 -4.04 -0.02 1.43 16 6 N -0.74 -9.83 5.56 -60.29 -0.33 -10.16 16 7 C 0.53 10.05 7.85 -10.98 -0.09 9.96 16 8 O -0.52 -11.98 15.86 5.56 0.09 -11.89 16 9 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 10 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 11 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 12 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 13 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 14 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 15 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 19 C 0.18 1.43 2.81 -68.86 -0.19 1.24 16 20 H 0.11 0.72 7.66 -51.93 -0.40 0.32 16 21 C -0.18 -1.10 8.59 37.16 0.32 -0.78 16 22 C 0.20 2.03 7.09 -12.95 -0.09 1.93 16 23 N -0.46 -4.95 8.94 -11.10 -0.10 -5.05 16 24 C -0.04 -0.37 11.80 -17.77 -0.21 -0.58 16 25 C -0.05 -0.42 7.39 -35.69 -0.26 -0.69 16 26 C -0.07 -0.27 10.43 36.00 0.38 0.11 16 27 O -0.20 -2.00 10.78 5.37 0.06 -1.94 16 28 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 29 H 0.06 0.72 5.01 -51.93 -0.26 0.46 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.33 7.46 -51.93 -0.39 -0.06 16 32 H 0.10 0.96 4.81 -51.93 -0.25 0.71 16 33 H 0.05 0.36 7.23 -51.93 -0.38 -0.01 16 34 H 0.08 0.56 7.63 -51.93 -0.40 0.17 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 1.00 5.29 -51.92 -0.27 0.72 16 37 H 0.40 3.91 8.47 -40.82 -0.35 3.56 16 38 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 39 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 40 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.07 0.50 6.42 -51.93 -0.33 0.17 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.38 7.47 -51.93 -0.39 -0.01 16 44 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 LS Contribution 395.43 15.07 5.96 5.96 Total: -1.00 -36.50 395.43 -8.40 -44.91 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.18 Total: 0.68 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 0.58 Total: -3.77 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.67 Total: -46.55 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.15 Total: -13.83 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.50 -8.40 -44.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317473727.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.156 kcal (2) G-P(sol) polarization free energy of solvation -36.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds