Wall clock time and date at job start Wed Apr 1 2020 01:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.47023 * 2 1 4 4 C 1.46899 * 110.99692 * 87.60390 * 3 2 1 5 5 C 1.52994 * 109.47376 * 283.46986 * 4 3 2 6 6 N 1.46505 * 109.47345 * 187.52532 * 5 4 3 7 7 C 1.34776 * 119.99893 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00269 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99864 * 179.97438 * 7 6 5 10 10 S 1.80995 * 109.47124 * 180.02562 * 9 7 6 11 11 C 1.76202 * 100.00110 * 180.02562 * 10 9 7 12 12 H 1.07997 * 119.99616 * 0.02562 * 11 10 9 13 13 C 1.38801 * 120.00057 * 179.97438 * 11 10 9 14 14 N 1.31626 * 120.00013 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99735 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47196 * 60.00116 * 15 13 11 17 17 H 1.48500 * 109.47007 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47118 * 300.00254 * 15 13 11 19 19 C 1.46894 * 111.00364 * 211.55652 * 3 2 1 20 20 H 1.08995 * 109.47463 * 192.43459 * 19 3 2 21 21 C 1.53004 * 109.47178 * 312.43938 * 19 3 2 22 22 C 1.50709 * 109.46874 * 72.43523 * 19 3 2 23 23 N 1.30247 * 125.62033 * 318.10655 * 22 19 3 24 24 C 1.34478 * 108.70360 * 179.97438 * 23 22 19 25 25 C 1.34332 * 107.66658 * 0.02562 * 24 23 22 26 26 C 1.50693 * 126.44425 * 179.97438 * 25 24 23 27 27 O 1.33964 * 125.61704 * 137.79954 * 22 19 3 28 28 H 1.09007 * 109.47179 * 171.92198 * 1 2 3 29 29 H 1.09004 * 109.47270 * 291.91556 * 1 2 3 30 30 H 1.09002 * 109.47459 * 51.91695 * 1 2 3 31 31 H 1.08997 * 109.47591 * 120.00562 * 2 1 3 32 32 H 1.09000 * 109.47445 * 240.00523 * 2 1 3 33 33 H 1.09001 * 109.47568 * 43.47398 * 4 3 2 34 34 H 1.09005 * 109.47344 * 163.47129 * 4 3 2 35 35 H 1.08998 * 109.47658 * 307.53299 * 5 4 3 36 36 H 1.09009 * 109.47018 * 67.53025 * 5 4 3 37 37 H 0.97000 * 119.99775 * 359.97438 * 6 5 4 38 38 H 1.09000 * 109.47341 * 300.00106 * 9 7 6 39 39 H 1.09000 * 109.46482 * 59.99971 * 9 7 6 40 40 H 0.96996 * 120.00019 * 179.97438 * 14 13 11 41 41 H 1.08998 * 109.47073 * 59.99893 * 21 19 3 42 42 H 1.09003 * 109.47059 * 179.97438 * 21 19 3 43 43 H 1.08998 * 109.46691 * 299.99664 * 21 19 3 44 44 H 1.07999 * 126.16778 * 180.02562 * 24 23 22 45 45 H 1.08997 * 109.47587 * 90.01774 * 26 25 24 46 46 H 1.09002 * 109.47437 * 210.02575 * 26 25 24 47 47 H 1.09006 * 109.47323 * 330.01695 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.1410 1.9004 1.3702 5 6 0.7525 2.2524 1.9076 6 7 0.8862 2.9310 3.1992 7 6 -0.2135 3.3363 3.8645 8 8 -1.3139 3.1390 3.3943 9 6 -0.0760 4.0338 5.1933 10 16 -1.7187 4.4490 5.8297 11 6 -1.2716 5.2309 7.3441 12 1 -0.2307 5.3262 7.6158 13 6 -2.2571 5.7253 8.1873 14 7 -3.5257 5.6096 7.8558 15 14 -1.7830 6.5536 9.7930 16 1 -0.9294 7.7347 9.5076 17 1 -3.0103 6.9900 10.5061 18 1 -1.0324 5.5941 10.6422 19 6 3.2968 1.4919 -0.7177 20 1 3.7453 2.4652 -0.5184 21 6 4.2430 0.3874 -0.2423 22 6 3.0552 1.3437 -2.1979 23 7 2.2517 0.4818 -2.7528 24 6 2.2970 0.6466 -4.0866 25 6 3.1594 1.6436 -4.3451 26 6 3.5295 2.1770 -5.7050 27 8 3.6271 2.0807 -3.1594 28 1 -0.3634 -1.0175 -0.1444 29 1 -0.3634 0.3836 0.9534 30 1 -0.3634 0.6339 -0.8089 31 1 1.8934 -0.5139 0.8899 32 1 1.8934 -0.5137 -0.8900 33 1 2.5945 1.1397 2.0058 34 1 2.7669 2.7928 1.3687 35 1 0.2459 2.9108 1.2020 36 1 0.1702 1.3398 2.0353 37 1 1.7663 3.0878 3.5758 38 1 0.4307 3.3751 5.8987 39 1 0.5062 4.9464 5.0660 40 1 -4.2143 5.9548 8.4452 41 1 3.7945 -0.5858 -0.4416 42 1 5.1906 0.4665 -0.7752 43 1 4.4177 0.4947 0.8282 44 1 1.7404 0.0796 -4.8182 45 1 2.8504 2.9855 -5.9754 46 1 4.5521 2.5538 -5.6816 47 1 3.4539 1.3773 -6.4419 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317473727.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:00 Heat of formation + Delta-G solvation = -31.006417 kcal Electronic energy + Delta-G solvation = -26708.649136 eV Core-core repulsion = 22825.836203 eV Total energy + Delta-G solvation = -3882.812932 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.30703 -40.70842 -39.67712 -36.08953 -35.56983 -34.56947 -33.93273 -32.55231 -31.92366 -30.47724 -28.21985 -27.74127 -27.53779 -25.11111 -23.75452 -23.13983 -22.24134 -21.86779 -20.84362 -19.80385 -18.15461 -17.85484 -17.65312 -17.43929 -17.00004 -16.86362 -16.46251 -16.10215 -16.01734 -15.67092 -15.22275 -14.84539 -14.68578 -14.57414 -14.36505 -14.19344 -14.07964 -13.77339 -13.52287 -13.27361 -13.15606 -13.15397 -13.11829 -13.01833 -12.84875 -12.63624 -12.55809 -12.31708 -12.17416 -12.01741 -11.73487 -11.71067 -11.12162 -11.11254 -10.93319 -10.25584 -10.05462 -9.65792 -9.40015 -8.65277 -8.32822 -6.11183 0.46469 1.27268 1.45227 1.45887 1.53345 1.61104 1.64135 1.74297 2.23734 2.29823 2.99424 3.01171 3.08366 3.35806 3.73067 3.85388 3.96213 4.00339 4.05540 4.10911 4.14026 4.28827 4.33348 4.42800 4.46912 4.51247 4.53431 4.55946 4.67104 4.69911 4.71188 4.75780 4.83097 4.91882 4.97449 5.11404 5.16227 5.19907 5.25051 5.40541 5.42803 5.43531 5.49479 5.94471 6.04306 6.21203 6.54358 6.79945 7.08159 7.28430 8.76160 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026422 B = 0.001690 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.472036 B =16564.264206 C =16622.053987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 N -0.539 5.539 4 C 0.058 3.942 5 C 0.122 3.878 6 N -0.710 5.710 7 C 0.533 3.467 8 O -0.568 6.568 9 C -0.128 4.128 10 S -0.155 6.155 11 C -0.547 4.547 12 H 0.084 0.916 13 C 0.013 3.987 14 N -0.912 5.912 15 Si 0.999 3.001 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.261 1.261 19 C 0.182 3.818 20 H 0.124 0.876 21 C -0.174 4.174 22 C 0.188 3.812 23 N -0.488 5.488 24 C -0.066 4.066 25 C -0.053 4.053 26 C -0.066 4.066 27 O -0.214 6.214 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.418 0.582 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.271 0.729 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.200 0.800 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.476 -10.944 -24.029 35.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.076 4.076 3 N -0.264 5.264 4 C -0.070 4.070 5 C -0.002 4.002 6 N -0.365 5.365 7 C 0.318 3.682 8 O -0.446 6.446 9 C -0.279 4.279 10 S 0.072 5.928 11 C -0.695 4.695 12 H 0.102 0.898 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.186 1.186 17 H -0.205 1.205 18 H -0.186 1.186 19 C 0.073 3.927 20 H 0.142 0.858 21 C -0.233 4.233 22 C -0.020 4.020 23 N -0.217 5.217 24 C -0.204 4.204 25 C -0.106 4.106 26 C -0.123 4.123 27 O -0.101 6.101 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.255 0.745 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.110 0.890 44 H 0.217 0.783 45 H 0.111 0.889 46 H 0.103 0.897 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 20.818 -11.365 -24.711 34.252 hybrid contribution 1.891 0.754 1.381 2.461 sum 22.710 -10.611 -23.329 34.243 Atomic orbital electron populations 1.21890 0.95957 1.01268 1.01186 1.22324 0.95506 0.87558 1.02234 1.61490 1.26455 1.22903 1.15545 1.22276 0.95161 1.01827 0.87732 1.21484 0.98503 0.96776 0.83393 1.45614 1.08880 1.60239 1.21739 1.20084 0.84379 0.77984 0.85707 1.90701 1.27962 1.56683 1.69279 1.23362 1.03460 1.04095 0.96974 1.85633 1.06597 1.76146 1.24455 1.23185 0.96218 1.43999 1.06051 0.89753 1.26142 0.94229 0.96165 1.02667 1.70183 1.00775 1.44947 1.38921 0.84995 0.77851 0.78642 0.76448 1.18627 1.20499 1.18593 1.20017 0.89707 1.02608 0.80402 0.85842 1.22460 0.99345 0.98118 1.03349 1.26383 0.92912 0.89028 0.93642 1.70320 1.19527 1.24023 1.07783 1.23543 1.02832 1.01236 0.92752 1.24199 0.99675 0.98991 0.87699 1.20466 1.03564 1.03090 0.85138 1.84361 1.57428 1.52476 1.15877 0.91983 0.93283 0.93861 0.93001 0.88979 0.91002 0.87881 0.93071 0.91896 0.74467 0.86957 0.87044 0.92035 0.91881 0.90783 0.88970 0.78348 0.88915 0.89668 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.70 71.98 0.70 -2.48 16 2 C 0.05 0.91 3.93 86.30 0.34 1.25 16 3 N -0.54 -9.11 4.26 -875.39 -3.72 -12.84 16 4 C 0.06 0.81 4.62 86.30 0.40 1.21 16 5 C 0.12 2.84 5.11 86.38 0.44 3.28 16 6 N -0.71 -17.40 5.56 -463.05 -2.57 -19.97 16 7 C 0.53 19.78 7.85 87.66 0.69 20.47 16 8 O -0.57 -27.12 15.86 -3.02 -0.05 -27.16 16 9 C -0.13 -5.01 6.16 71.24 0.44 -4.57 16 10 S -0.16 -8.70 20.57 -56.49 -1.16 -9.87 16 11 C -0.55 -31.26 9.50 67.95 0.65 -30.61 16 12 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 13 C 0.01 0.72 5.49 84.86 0.47 1.19 16 14 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 15 Si 1.00 43.57 29.55 68.60 2.03 45.59 16 16 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 17 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 18 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 19 C 0.18 2.54 2.81 44.17 0.12 2.67 16 20 H 0.12 1.32 7.66 -2.39 -0.02 1.30 16 21 C -0.17 -1.70 8.59 71.98 0.62 -1.08 16 22 C 0.19 3.61 7.09 88.35 0.63 4.24 16 23 N -0.49 -10.37 8.94 -303.83 -2.72 -13.09 16 24 C -0.07 -1.13 11.80 83.39 0.98 -0.15 16 25 C -0.05 -0.81 7.39 24.79 0.18 -0.62 16 26 C -0.07 -0.41 10.43 71.23 0.74 0.33 16 27 O -0.21 -4.09 10.78 -3.71 -0.04 -4.13 16 28 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.05 1.19 5.01 -2.38 -0.01 1.18 16 30 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 0.79 7.46 -2.39 -0.02 0.77 16 32 H 0.09 1.78 4.81 -2.39 -0.01 1.77 16 33 H 0.07 0.75 7.23 -2.39 -0.02 0.74 16 34 H 0.10 1.03 7.63 -2.38 -0.02 1.02 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 1.67 5.29 -2.38 -0.01 1.66 16 37 H 0.42 6.69 8.47 -92.71 -0.79 5.91 16 38 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 39 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 40 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 41 H 0.06 0.76 6.42 -2.39 -0.02 0.75 16 42 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.09 0.59 7.47 -2.39 -0.02 0.57 16 44 H 0.20 2.33 8.06 -2.91 -0.02 2.30 16 45 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.11 0.21 8.14 -2.38 -0.02 0.19 16 Total: -1.00 -83.21 395.43 -0.35 -83.56 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.20 Total: 18.92 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 7.40 Total: -4.88 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -8.73 Total: -102.04 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.09 Total: -31.29 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.87 kcal Total: -83.21 -0.35 -83.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317473727.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.555 kcal (2) G-P(sol) polarization free energy of solvation -83.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds