Wall clock time and date at job start Wed Apr 1 2020 00:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81397 * 103.00005 * 2 1 4 4 C 1.53005 * 109.47054 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46752 * 55.00365 * 4 3 2 6 6 C 1.52995 * 109.47292 * 294.99820 * 4 3 2 7 7 C 1.50699 * 109.47029 * 174.99886 * 4 3 2 8 8 O 1.21283 * 120.00189 * 30.67630 * 7 4 3 9 9 N 1.34773 * 120.00058 * 210.39955 * 7 4 3 10 10 C 1.47863 * 126.92804 * 175.06786 * 9 7 4 11 11 C 1.56008 * 105.12161 * 181.86445 * 10 9 7 12 12 H 1.08997 * 116.18450 * 159.03720 * 11 10 9 13 13 C 1.57078 * 99.48591 * 33.11611 * 11 10 9 14 14 C 1.49279 * 126.92866 * 355.38373 * 9 7 4 15 15 H 1.09008 * 116.11909 * 16.82464 * 14 9 7 16 16 C 1.56009 * 104.13154 * 247.71091 * 14 9 7 17 17 N 1.49706 * 105.05327 * 288.91431 * 11 10 9 18 18 C 1.46901 * 111.00445 * 306.25394 * 17 11 10 19 19 C 1.50697 * 109.47018 * 300.10830 * 18 17 11 20 20 O 1.21296 * 120.00270 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99799 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99971 * 180.02562 * 21 19 18 23 23 H 1.08007 * 119.99929 * 359.97438 * 22 21 19 24 24 C 1.38945 * 120.00102 * 180.02562 * 22 21 19 25 25 N 1.31405 * 120.00199 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00194 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47185 * 89.99918 * 26 24 22 28 28 H 1.48506 * 109.47594 * 210.00010 * 26 24 22 29 29 H 1.48506 * 109.47382 * 330.00302 * 26 24 22 30 30 H 1.09002 * 109.46918 * 299.99857 * 1 2 3 31 31 H 1.08997 * 109.47134 * 59.99961 * 1 2 3 32 32 H 1.08998 * 109.46700 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47090 * 59.99873 * 3 2 1 34 34 H 1.09003 * 109.47033 * 300.00225 * 3 2 1 35 35 H 1.09000 * 109.46972 * 59.94007 * 6 4 3 36 36 H 1.09000 * 109.47228 * 179.97438 * 6 4 3 37 37 H 1.09002 * 109.47015 * 299.94742 * 6 4 3 38 38 H 1.09004 * 110.31539 * 300.88250 * 10 9 7 39 39 H 1.09001 * 110.31303 * 63.06378 * 10 9 7 40 40 H 1.08998 * 112.35830 * 191.57353 * 13 11 10 41 41 H 1.09008 * 112.43669 * 64.18086 * 13 11 10 42 42 H 1.08996 * 110.31777 * 47.69421 * 16 14 9 43 43 H 1.09001 * 110.32207 * 169.90007 * 16 14 9 44 44 H 1.09002 * 109.46793 * 60.10887 * 18 17 11 45 45 H 1.09000 * 109.47169 * 180.10571 * 18 17 11 46 46 H 0.97001 * 120.00077 * 0.02562 * 21 19 18 47 47 H 0.97004 * 120.00679 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 1 4.1694 1.3953 -0.8428 6 6 4.3184 1.3916 1.3064 7 6 4.0819 3.4029 -0.1245 8 8 3.3335 4.2401 0.3336 9 7 5.2201 3.7808 -0.7395 10 6 5.6532 5.1633 -1.0351 11 6 7.0085 5.0119 -1.7929 12 1 7.3175 5.8624 -2.4005 13 6 6.7291 3.6684 -2.5572 14 6 6.2946 2.8878 -1.2653 15 1 6.0254 1.8399 -1.3981 16 6 7.5154 3.1735 -0.3370 17 7 7.9849 4.5526 -0.7552 18 6 7.9888 5.4579 0.4017 19 6 8.3734 6.8443 -0.0467 20 8 8.6197 7.0573 -1.2152 21 7 8.4428 7.8477 0.8504 22 6 8.7923 9.1090 0.4424 23 1 9.0123 9.2985 -0.5979 24 6 8.8643 10.1434 1.3674 25 7 8.5980 9.9125 2.6333 26 14 9.3411 11.8619 0.8116 27 1 8.1193 12.6169 0.4342 28 1 10.0355 12.5657 1.9197 29 1 10.2476 11.7693 -0.3611 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8031 2.2371 0.8900 34 1 1.8031 2.2371 -0.8900 35 1 4.0719 0.3336 1.3965 36 1 5.4015 1.5140 1.3057 37 1 3.8921 1.9369 2.1484 38 1 4.9187 5.6632 -1.6666 39 1 5.7993 5.7202 -0.1096 40 1 7.6300 3.2533 -3.0091 41 1 5.9169 3.7612 -3.2784 42 1 7.2093 3.1502 0.7089 43 1 8.3065 2.4455 -0.5171 44 1 6.9941 5.4829 0.8467 45 1 8.7080 5.1019 1.1393 46 1 8.2455 7.6774 1.7848 47 1 8.6487 10.6345 3.2791 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318189734.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:06 Heat of formation + Delta-G solvation = -27.167041 kcal Electronic energy + Delta-G solvation = -28389.683336 eV Core-core repulsion = 24507.036892 eV Total energy + Delta-G solvation = -3882.646444 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.23877 -39.10773 -37.84340 -34.79604 -34.16995 -33.49150 -31.35425 -30.70226 -29.91913 -29.42910 -27.52454 -26.55709 -25.65337 -24.18576 -22.94585 -21.60873 -20.32098 -19.18242 -18.58341 -17.86281 -17.83433 -16.48601 -16.39725 -15.98820 -15.77582 -15.30706 -15.02963 -14.60919 -14.51662 -14.20574 -13.93137 -13.87973 -13.76159 -13.48625 -13.23621 -12.97309 -12.77494 -12.58009 -12.43447 -12.41018 -12.03133 -11.84515 -11.65447 -11.57804 -11.55142 -11.43560 -11.33769 -11.28587 -11.01334 -10.89403 -10.40605 -10.39908 -10.23380 -9.84551 -9.51053 -8.77412 -8.42489 -8.06192 -8.04049 -7.96291 -6.43021 -3.84117 1.22989 2.17591 2.48599 2.77461 3.16929 3.25960 3.31364 3.82251 3.88221 4.16230 4.20709 4.27610 4.33732 4.46766 4.52567 4.71534 4.74977 4.76125 4.81641 5.01634 5.04194 5.17431 5.21133 5.26698 5.28537 5.31352 5.41187 5.48640 5.54266 5.58006 5.67153 5.70267 5.77185 5.82331 5.88632 5.89652 5.99627 6.12254 6.22516 6.37805 6.86604 7.07915 7.40383 7.53741 8.02131 8.03661 8.58584 9.15762 9.51696 10.02328 10.74539 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019512 B = 0.002427 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.702481 B =11535.849725 C =12213.795502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.258 6.258 3 C -0.068 4.068 4 C -0.087 4.087 5 H 0.098 0.902 6 C -0.143 4.143 7 C 0.536 3.464 8 O -0.539 6.539 9 N -0.616 5.616 10 C 0.067 3.933 11 C 0.068 3.932 12 H 0.155 0.845 13 C -0.136 4.136 14 C 0.098 3.902 15 H 0.124 0.876 16 C 0.018 3.982 17 N -0.481 5.481 18 C 0.024 3.976 19 C 0.443 3.557 20 O -0.582 6.582 21 N -0.561 5.561 22 C -0.299 4.299 23 H 0.104 0.896 24 C 0.023 3.977 25 N -0.900 5.900 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.056 0.944 45 H 0.090 0.910 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.089 -21.325 -4.632 24.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.032 6.032 3 C -0.216 4.216 4 C -0.110 4.110 5 H 0.116 0.884 6 C -0.201 4.201 7 C 0.323 3.677 8 O -0.416 6.416 9 N -0.351 5.351 10 C -0.056 4.056 11 C -0.040 4.040 12 H 0.172 0.828 13 C -0.174 4.174 14 C -0.006 4.006 15 H 0.141 0.859 16 C -0.111 4.111 17 N -0.205 5.205 18 C -0.107 4.107 19 C 0.229 3.771 20 O -0.467 6.467 21 N -0.197 5.197 22 C -0.429 4.429 23 H 0.122 0.878 24 C -0.179 4.179 25 N -0.541 5.541 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.110 0.890 44 H 0.074 0.926 45 H 0.108 0.892 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.196 -21.480 -5.131 24.324 hybrid contribution -1.629 1.913 0.913 2.673 sum -11.825 -19.567 -4.218 23.248 Atomic orbital electron populations 1.23394 0.94022 1.06501 1.05153 1.86702 1.07586 1.10850 1.98085 1.23246 0.97857 0.94177 1.06353 1.20964 0.94644 0.93454 1.01904 0.88396 1.21805 1.01100 1.02185 0.95000 1.20116 0.79738 0.90504 0.77381 1.90729 1.49549 1.53829 1.47469 1.49346 1.19458 1.08551 1.57755 1.23282 0.97782 0.82914 1.01664 1.24895 0.87162 0.98551 0.93390 0.82811 1.23987 1.02012 0.95831 0.95610 1.24179 0.86471 0.95242 0.94704 0.85881 1.24385 0.95649 0.92979 0.98074 1.66163 1.45030 1.00441 1.08855 1.22251 1.00941 0.93775 0.93762 1.19628 0.85126 0.85460 0.86930 1.90462 1.54994 1.83569 1.17652 1.41868 1.59973 1.08021 1.09824 1.19691 1.43099 0.83951 0.96140 0.87830 1.25277 0.97421 1.00315 0.94922 1.69610 1.48974 1.33965 1.01564 0.85858 0.78725 0.81466 0.78234 1.20409 1.20918 1.19372 0.90330 0.90447 0.87997 0.88767 0.89783 0.90261 0.91747 0.91605 0.90990 0.89991 0.88504 0.89996 0.91717 0.89012 0.92644 0.89176 0.77489 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.76 101.05 1.09 0.35 16 2 S -0.26 -2.17 21.19 -107.50 -2.28 -4.45 16 3 C -0.07 -0.64 4.90 37.16 0.18 -0.46 16 4 C -0.09 -0.84 2.30 -91.77 -0.21 -1.05 16 5 H 0.10 0.79 6.72 -51.93 -0.35 0.44 16 6 C -0.14 -1.25 9.00 37.16 0.33 -0.92 16 7 C 0.54 7.19 6.94 -10.99 -0.08 7.11 16 8 O -0.54 -9.46 16.70 5.56 0.09 -9.36 16 9 N -0.62 -7.88 2.94 -156.81 -0.46 -8.34 16 10 C 0.07 1.02 6.01 -1.68 -0.01 1.01 16 11 C 0.07 1.02 4.14 -62.32 -0.26 0.77 16 12 H 0.15 2.73 6.47 -51.93 -0.34 2.40 16 13 C -0.14 -1.46 6.81 -22.31 -0.15 -1.61 16 14 C 0.10 0.96 4.95 -62.57 -0.31 0.65 16 15 H 0.12 0.85 6.85 -51.92 -0.36 0.49 16 16 C 0.02 0.20 6.37 0.43 0.00 0.20 16 17 N -0.48 -7.46 5.28 -215.28 -1.14 -8.60 16 18 C 0.02 0.43 4.70 -4.98 -0.02 0.41 16 19 C 0.44 10.18 7.50 -10.99 -0.08 10.10 16 20 O -0.58 -14.88 13.70 5.54 0.08 -14.80 16 21 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 22 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 23 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 26 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 30 H 0.08 0.45 8.14 -51.92 -0.42 0.02 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.49 8.14 -51.92 -0.42 0.06 16 33 H 0.09 0.99 8.02 -51.92 -0.42 0.57 16 34 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 35 H 0.08 0.62 7.13 -51.93 -0.37 0.25 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.08 1.48 5.33 -51.93 -0.28 1.20 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 42 H 0.06 0.74 7.72 -51.93 -0.40 0.34 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.97 5.65 -51.93 -0.29 0.68 16 45 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 46 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 47 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 385.37 15.07 5.81 5.81 Total: -1.00 -32.31 385.37 -9.29 -41.60 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -7.28 Total: 11.53 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 0.24 Total: 8.66 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.93 Total: -55.02 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: 0.17 Total: -24.17 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -2.17 SS G_CDS: -2.28 Total: -4.45 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.31 -9.29 -41.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318189734.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.436 kcal (2) G-P(sol) polarization free energy of solvation -32.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds