Wall clock time and date at job start Wed Apr 1 2020 00:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81397 * 103.00005 * 2 1 4 4 C 1.53005 * 109.47054 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46752 * 55.00365 * 4 3 2 6 6 C 1.52995 * 109.47292 * 294.99820 * 4 3 2 7 7 C 1.50699 * 109.47029 * 174.99886 * 4 3 2 8 8 O 1.21283 * 120.00189 * 30.67630 * 7 4 3 9 9 N 1.34773 * 120.00058 * 210.39955 * 7 4 3 10 10 C 1.47863 * 126.92804 * 175.06786 * 9 7 4 11 11 C 1.56008 * 105.12161 * 181.86445 * 10 9 7 12 12 H 1.08997 * 116.18450 * 159.03720 * 11 10 9 13 13 C 1.57078 * 99.48591 * 33.11611 * 11 10 9 14 14 C 1.49279 * 126.92866 * 355.38373 * 9 7 4 15 15 H 1.09008 * 116.11909 * 16.82464 * 14 9 7 16 16 C 1.56009 * 104.13154 * 247.71091 * 14 9 7 17 17 N 1.49706 * 105.05327 * 288.91431 * 11 10 9 18 18 C 1.46901 * 111.00445 * 306.25394 * 17 11 10 19 19 C 1.50697 * 109.47018 * 300.10830 * 18 17 11 20 20 O 1.21296 * 120.00270 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99799 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99971 * 180.02562 * 21 19 18 23 23 H 1.08007 * 119.99929 * 359.97438 * 22 21 19 24 24 C 1.38945 * 120.00102 * 180.02562 * 22 21 19 25 25 N 1.31405 * 120.00199 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00194 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47185 * 89.99918 * 26 24 22 28 28 H 1.48506 * 109.47594 * 210.00010 * 26 24 22 29 29 H 1.48506 * 109.47382 * 330.00302 * 26 24 22 30 30 H 1.09002 * 109.46918 * 299.99857 * 1 2 3 31 31 H 1.08997 * 109.47134 * 59.99961 * 1 2 3 32 32 H 1.08998 * 109.46700 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47090 * 59.99873 * 3 2 1 34 34 H 1.09003 * 109.47033 * 300.00225 * 3 2 1 35 35 H 1.09000 * 109.46972 * 59.94007 * 6 4 3 36 36 H 1.09000 * 109.47228 * 179.97438 * 6 4 3 37 37 H 1.09002 * 109.47015 * 299.94742 * 6 4 3 38 38 H 1.09004 * 110.31539 * 300.88250 * 10 9 7 39 39 H 1.09001 * 110.31303 * 63.06378 * 10 9 7 40 40 H 1.08998 * 112.35830 * 191.57353 * 13 11 10 41 41 H 1.09008 * 112.43669 * 64.18086 * 13 11 10 42 42 H 1.08996 * 110.31777 * 47.69421 * 16 14 9 43 43 H 1.09001 * 110.32207 * 169.90007 * 16 14 9 44 44 H 1.09002 * 109.46793 * 60.10887 * 18 17 11 45 45 H 1.09000 * 109.47169 * 180.10571 * 18 17 11 46 46 H 0.97001 * 120.00077 * 0.02562 * 21 19 18 47 47 H 0.97004 * 120.00679 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 1 4.1694 1.3953 -0.8428 6 6 4.3184 1.3916 1.3064 7 6 4.0819 3.4029 -0.1245 8 8 3.3335 4.2401 0.3336 9 7 5.2201 3.7808 -0.7395 10 6 5.6532 5.1633 -1.0351 11 6 7.0085 5.0119 -1.7929 12 1 7.3175 5.8624 -2.4005 13 6 6.7291 3.6684 -2.5572 14 6 6.2946 2.8878 -1.2653 15 1 6.0254 1.8399 -1.3981 16 6 7.5154 3.1735 -0.3370 17 7 7.9849 4.5526 -0.7552 18 6 7.9888 5.4579 0.4017 19 6 8.3734 6.8443 -0.0467 20 8 8.6197 7.0573 -1.2152 21 7 8.4428 7.8477 0.8504 22 6 8.7923 9.1090 0.4424 23 1 9.0123 9.2985 -0.5979 24 6 8.8643 10.1434 1.3674 25 7 8.5980 9.9125 2.6333 26 14 9.3411 11.8619 0.8116 27 1 8.1193 12.6169 0.4342 28 1 10.0355 12.5657 1.9197 29 1 10.2476 11.7693 -0.3611 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8031 2.2371 0.8900 34 1 1.8031 2.2371 -0.8900 35 1 4.0719 0.3336 1.3965 36 1 5.4015 1.5140 1.3057 37 1 3.8921 1.9369 2.1484 38 1 4.9187 5.6632 -1.6666 39 1 5.7993 5.7202 -0.1096 40 1 7.6300 3.2533 -3.0091 41 1 5.9169 3.7612 -3.2784 42 1 7.2093 3.1502 0.7089 43 1 8.3065 2.4455 -0.5171 44 1 6.9941 5.4829 0.8467 45 1 8.7080 5.1019 1.1393 46 1 8.2455 7.6774 1.7848 47 1 8.6487 10.6345 3.2791 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318189734.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:05 Heat of formation + Delta-G solvation = -50.279831 kcal Electronic energy + Delta-G solvation = -28390.685582 eV Core-core repulsion = 24507.036892 eV Total energy + Delta-G solvation = -3883.648690 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.34044 -40.38176 -39.52425 -36.06276 -35.67521 -34.83232 -33.32098 -31.93962 -30.97160 -29.93101 -28.21395 -28.11893 -26.74569 -25.92517 -23.91489 -22.54890 -21.66524 -20.80551 -19.90151 -19.52785 -18.80178 -17.78444 -17.62903 -17.03208 -16.95076 -16.51926 -16.27575 -16.13462 -15.69879 -15.52262 -15.37194 -14.87851 -14.61097 -14.42116 -14.22855 -14.12968 -13.83338 -13.80869 -13.54908 -13.38819 -13.25869 -13.04215 -12.97753 -12.83901 -12.66161 -12.46343 -12.43730 -12.37617 -12.31954 -12.25181 -12.12929 -11.96368 -11.49342 -11.12602 -10.85317 -10.25768 -10.03535 -9.90680 -9.29645 -8.66874 -8.48704 -5.97610 0.58023 1.35682 1.39317 1.44575 1.52446 1.57152 1.77338 2.01516 2.25910 2.69111 3.17344 3.20623 3.29642 3.40220 3.49668 3.60531 3.73925 3.82520 3.94763 4.00190 4.18567 4.24305 4.30768 4.33317 4.35011 4.41180 4.43400 4.48852 4.56372 4.62618 4.72697 4.79970 4.84097 4.88564 4.91349 4.93094 4.98954 5.07110 5.14407 5.22895 5.38626 5.70514 5.77179 6.01662 6.40529 6.56376 6.97274 7.09832 7.52585 8.07019 8.68940 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019512 B = 0.002427 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.702481 B =11535.849725 C =12213.795502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.262 6.262 3 C -0.067 4.067 4 C -0.076 4.076 5 H 0.126 0.874 6 C -0.139 4.139 7 C 0.532 3.468 8 O -0.590 6.590 9 N -0.613 5.613 10 C 0.071 3.929 11 C 0.057 3.943 12 H 0.118 0.882 13 C -0.119 4.119 14 C 0.111 3.889 15 H 0.172 0.828 16 C 0.017 3.983 17 N -0.496 5.496 18 C 0.040 3.960 19 C 0.443 3.557 20 O -0.609 6.609 21 N -0.576 5.576 22 C -0.330 4.330 23 H 0.083 0.917 24 C -0.016 4.016 25 N -0.923 5.923 26 Si 0.994 3.006 27 H -0.273 1.273 28 H -0.271 1.271 29 H -0.270 1.270 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.047 0.953 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.123 0.877 44 H 0.057 0.943 45 H 0.107 0.893 46 H 0.393 0.607 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.130 -24.353 -5.197 27.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.036 6.036 3 C -0.215 4.215 4 C -0.098 4.098 5 H 0.143 0.857 6 C -0.196 4.196 7 C 0.321 3.679 8 O -0.470 6.470 9 N -0.347 5.347 10 C -0.053 4.053 11 C -0.052 4.052 12 H 0.135 0.865 13 C -0.158 4.158 14 C 0.009 3.991 15 H 0.189 0.811 16 C -0.110 4.110 17 N -0.220 5.220 18 C -0.091 4.091 19 C 0.231 3.769 20 O -0.495 6.495 21 N -0.213 5.213 22 C -0.459 4.459 23 H 0.101 0.899 24 C -0.216 4.216 25 N -0.564 5.564 26 Si 0.818 3.182 27 H -0.198 1.198 28 H -0.196 1.196 29 H -0.194 1.194 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.136 0.864 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.132 0.868 41 H 0.112 0.888 42 H 0.084 0.916 43 H 0.141 0.859 44 H 0.074 0.926 45 H 0.125 0.875 46 H 0.226 0.774 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.223 -24.556 -5.700 27.203 hybrid contribution -1.671 2.796 1.051 3.423 sum -11.894 -21.759 -4.650 25.230 Atomic orbital electron populations 1.23498 0.92102 1.07685 1.05606 1.86631 1.09789 1.09121 1.98081 1.23147 0.97836 0.95264 1.05285 1.20978 0.94895 0.90415 1.03470 0.85657 1.21798 1.01601 1.02588 0.93648 1.20917 0.79002 0.91867 0.76139 1.90707 1.51187 1.55586 1.49542 1.49441 1.20014 1.07820 1.57405 1.23004 0.97999 0.84493 0.99812 1.24687 0.86491 1.00098 0.93916 0.86452 1.23963 1.03214 0.92684 0.95900 1.24516 0.84581 0.96778 0.93184 0.81110 1.24550 0.97266 0.90644 0.98537 1.66169 1.45979 1.01884 1.07986 1.22057 1.01157 0.90933 0.94989 1.20600 0.83050 0.87057 0.86223 1.90444 1.55614 1.84561 1.18907 1.41969 1.61031 1.08072 1.10186 1.19676 1.44967 0.85693 0.95589 0.89936 1.26087 0.96903 1.03692 0.94903 1.69683 1.49271 1.35194 1.02269 0.84912 0.78498 0.76831 0.78007 1.19829 1.19583 1.19419 0.90090 0.89883 0.86390 0.90474 0.90364 0.88817 0.90593 0.93408 0.92265 0.93429 0.86756 0.88804 0.91568 0.85946 0.92560 0.87496 0.77385 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 10.76 113.37 1.22 0.02 16 2 S -0.26 -3.77 21.19 -56.49 -1.20 -4.97 16 3 C -0.07 -1.18 4.90 71.98 0.35 -0.83 16 4 C -0.08 -1.27 2.30 -11.54 -0.03 -1.30 16 5 H 0.13 1.44 6.72 -2.39 -0.02 1.43 16 6 C -0.14 -2.06 9.00 71.98 0.65 -1.42 16 7 C 0.53 13.82 6.94 87.66 0.61 14.43 16 8 O -0.59 -21.33 16.70 -3.04 -0.05 -21.38 16 9 N -0.61 -14.86 2.94 -768.41 -2.26 -17.12 16 10 C 0.07 2.26 6.01 87.16 0.52 2.79 16 11 C 0.06 1.71 4.14 46.84 0.19 1.91 16 12 H 0.12 4.43 6.47 -2.39 -0.02 4.41 16 13 C -0.12 -2.23 6.81 33.46 0.23 -2.01 16 14 C 0.11 1.76 4.95 46.93 0.23 2.00 16 15 H 0.17 1.23 6.85 -2.38 -0.02 1.21 16 16 C 0.02 0.34 6.37 86.42 0.55 0.89 16 17 N -0.50 -14.92 5.28 -835.02 -4.41 -19.32 16 18 C 0.04 1.44 4.70 85.56 0.40 1.84 16 19 C 0.44 21.24 7.50 87.66 0.66 21.90 16 20 O -0.61 -32.62 13.70 -3.08 -0.04 -32.66 16 21 N -0.58 -30.31 5.29 -306.98 -1.62 -31.94 16 22 C -0.33 -18.97 9.68 84.04 0.81 -18.15 16 23 H 0.08 5.00 7.16 -2.91 -0.02 4.98 16 24 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 25 N -0.92 -51.30 13.05 21.66 0.28 -51.01 16 26 Si 0.99 43.76 29.55 68.60 2.03 45.79 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 29 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 1.62 8.02 -2.39 -0.02 1.60 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.09 1.16 7.13 -2.39 -0.02 1.15 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.05 1.83 5.33 -2.39 -0.01 1.82 16 40 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.07 1.31 7.72 -2.39 -0.02 1.29 16 43 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.06 2.03 5.65 -2.39 -0.01 2.02 16 45 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 46 H 0.39 20.11 7.90 -92.71 -0.73 19.37 16 47 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -74.62 385.37 -0.14 -74.76 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: 0.26 Total: 36.23 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: 6.87 Total: 21.63 kcal Atomic # 7 Polarization: -111.39 SS G_CDS: -8.00 Total: -119.39 kcal Atomic # 8 Polarization: -53.95 SS G_CDS: -0.09 Total: -54.04 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -1.20 Total: -4.97 kcal Total: -74.62 -0.14 -74.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318189734.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.479 kcal (2) G-P(sol) polarization free energy of solvation -74.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds