Wall clock time and date at job start Wed Apr 1 2020 00:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81400 * 103.00004 * 2 1 4 4 C 1.53000 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46595 * 304.99919 * 4 3 2 6 6 C 1.52999 * 109.47072 * 64.99997 * 4 3 2 7 7 C 1.50699 * 109.46824 * 184.99941 * 4 3 2 8 8 O 1.21277 * 120.00337 * 332.10265 * 7 4 3 9 9 N 1.34776 * 119.99746 * 152.10374 * 7 4 3 10 10 C 1.47865 * 126.92810 * 5.41493 * 9 7 4 11 11 C 1.56022 * 105.11232 * 181.90152 * 10 9 7 12 12 H 1.09000 * 116.25752 * 158.85173 * 11 10 9 13 13 C 1.57083 * 99.59741 * 32.80650 * 11 10 9 14 14 C 1.49279 * 126.92479 * 185.10322 * 9 7 4 15 15 H 1.08998 * 116.12624 * 16.88836 * 14 9 7 16 16 C 1.56017 * 104.12887 * 246.92253 * 14 9 7 17 17 N 1.49710 * 105.32840 * 288.98010 * 16 14 9 18 18 C 1.46900 * 111.74409 * 122.21023 * 17 16 14 19 19 C 1.50704 * 109.47128 * 184.60180 * 18 17 16 20 20 O 1.21293 * 119.99718 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00176 * 179.97438 * 19 18 17 22 22 C 1.37094 * 120.00144 * 180.02562 * 21 19 18 23 23 H 1.08003 * 119.99939 * 0.02562 * 22 21 19 24 24 C 1.38946 * 119.99802 * 179.97438 * 22 21 19 25 25 N 1.31408 * 120.00376 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99898 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47370 * 59.99961 * 26 24 22 28 28 H 1.48502 * 109.47434 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47254 * 300.00153 * 26 24 22 30 30 H 1.08999 * 109.47205 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47141 * 300.00164 * 1 2 3 32 32 H 1.08996 * 109.47043 * 60.00441 * 1 2 3 33 33 H 1.09003 * 109.47216 * 59.99431 * 3 2 1 34 34 H 1.09002 * 109.46636 * 300.00073 * 3 2 1 35 35 H 1.09000 * 109.47211 * 54.67410 * 6 4 3 36 36 H 1.09003 * 109.47123 * 174.67238 * 6 4 3 37 37 H 1.09000 * 109.47090 * 294.67124 * 6 4 3 38 38 H 1.09002 * 110.31383 * 300.80787 * 10 9 7 39 39 H 1.08994 * 110.31371 * 62.98884 * 10 9 7 40 40 H 1.08990 * 112.35945 * 64.33783 * 13 11 10 41 41 H 1.09006 * 112.35062 * 191.66041 * 13 11 10 42 42 H 1.09001 * 110.31942 * 47.69298 * 16 14 9 43 43 H 1.08998 * 110.32247 * 169.79493 * 16 14 9 44 44 H 1.09001 * 109.46953 * 304.60268 * 18 17 16 45 45 H 1.09000 * 109.47169 * 64.60475 * 18 17 16 46 46 H 0.96998 * 119.99517 * 0.02562 * 21 19 18 47 47 H 0.97005 * 120.00094 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.1701 1.3951 0.8410 6 6 4.3172 1.3918 -1.3083 7 6 4.0819 3.4029 0.1232 8 8 3.3093 4.2419 -0.2892 9 7 5.2444 3.7791 0.6921 10 6 6.3402 2.8943 1.1426 11 6 7.4063 3.8504 1.7620 12 1 8.1124 3.3985 2.4587 13 6 6.4574 4.9583 2.3449 14 6 5.6879 5.1732 0.9887 15 1 4.9088 5.9355 0.9864 16 6 6.8984 5.3997 0.0309 17 7 8.0012 4.5482 0.5786 18 6 8.4859 3.5803 -0.4145 19 6 9.5117 2.6783 0.2222 20 8 9.8093 2.8269 1.3886 21 7 10.0976 1.7060 -0.5042 22 6 11.0304 0.8851 0.0751 23 1 11.2954 1.0174 1.1137 24 6 11.6340 -0.1177 -0.6737 25 7 11.3112 -0.2789 -1.9373 26 14 12.9045 -1.2366 0.1158 27 1 12.2858 -1.9621 1.2544 28 1 13.3942 -2.2153 -0.8880 29 1 14.0439 -0.4217 0.6087 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8031 2.2372 0.8899 34 1 1.8031 2.2370 -0.8900 35 1 3.8206 1.8704 -2.1524 36 1 5.3864 1.5995 -1.3504 37 1 4.1542 0.3150 -1.3537 38 1 5.9766 2.1947 1.8952 39 1 6.7629 2.3542 0.2955 40 1 5.8114 4.5768 3.1355 41 1 7.0030 5.8484 2.6583 42 1 6.6462 5.0795 -0.9801 43 1 7.1914 6.4496 0.0328 44 1 7.6501 2.9815 -0.7762 45 1 8.9395 4.1134 -1.2500 46 1 9.8593 1.5870 -1.4369 47 1 11.7329 -0.9788 -2.4601 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318189735.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:07 Heat of formation + Delta-G solvation = -47.075956 kcal Electronic energy + Delta-G solvation = -28653.553305 eV Core-core repulsion = 24770.043545 eV Total energy + Delta-G solvation = -3883.509760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.40164 -40.37851 -39.49844 -36.00951 -35.72204 -34.86162 -33.28047 -32.10354 -30.78308 -29.96215 -28.30871 -28.13834 -26.42124 -26.00683 -24.43840 -21.98040 -21.69878 -20.96016 -19.95669 -19.48009 -18.76316 -17.84039 -17.63021 -17.05028 -16.88941 -16.53508 -16.39545 -16.14088 -15.69461 -15.51596 -15.23379 -14.86943 -14.67466 -14.45646 -14.19559 -14.09632 -13.85636 -13.81386 -13.51586 -13.40099 -13.21583 -13.12775 -12.97914 -12.90923 -12.61709 -12.52977 -12.42543 -12.40150 -12.32486 -12.26066 -12.11233 -12.01364 -11.43753 -11.10333 -10.86564 -10.20649 -9.98365 -9.86231 -9.23236 -8.72891 -8.43962 -5.92188 0.56685 1.40720 1.41389 1.44086 1.54169 1.57815 1.77080 2.05692 2.29307 2.68901 3.20934 3.24656 3.27487 3.43060 3.44471 3.59956 3.69584 3.75797 3.94690 4.01648 4.12068 4.27345 4.30392 4.33465 4.35373 4.38509 4.41001 4.51799 4.53388 4.59296 4.69120 4.72054 4.74316 4.83277 4.86580 4.90040 4.98310 5.10009 5.14753 5.16202 5.43948 5.73404 5.82656 6.06896 6.34703 6.61718 6.93151 7.15058 7.57804 8.12191 8.73101 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010065 B = 0.003291 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.134976 B = 8507.250801 C =10546.488704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.290 6.290 3 C -0.055 4.055 4 C -0.087 4.087 5 H 0.102 0.898 6 C -0.136 4.136 7 C 0.543 3.457 8 O -0.571 6.571 9 N -0.614 5.614 10 C 0.062 3.938 11 C 0.060 3.940 12 H 0.127 0.873 13 C -0.120 4.120 14 C 0.112 3.888 15 H 0.139 0.861 16 C 0.029 3.971 17 N -0.506 5.506 18 C 0.043 3.957 19 C 0.447 3.553 20 O -0.608 6.608 21 N -0.572 5.572 22 C -0.328 4.328 23 H 0.083 0.917 24 C -0.012 4.012 25 N -0.921 5.921 26 Si 0.990 3.010 27 H -0.270 1.270 28 H -0.274 1.274 29 H -0.273 1.273 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.055 0.945 43 H 0.109 0.891 44 H 0.066 0.934 45 H 0.102 0.898 46 H 0.394 0.606 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.238 5.257 2.925 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.064 6.064 3 C -0.203 4.203 4 C -0.109 4.109 5 H 0.120 0.880 6 C -0.194 4.194 7 C 0.331 3.669 8 O -0.451 6.451 9 N -0.348 5.348 10 C -0.062 4.062 11 C -0.049 4.049 12 H 0.145 0.855 13 C -0.158 4.158 14 C 0.009 3.991 15 H 0.157 0.843 16 C -0.099 4.099 17 N -0.230 5.230 18 C -0.088 4.088 19 C 0.234 3.766 20 O -0.494 6.494 21 N -0.209 5.209 22 C -0.458 4.458 23 H 0.101 0.899 24 C -0.212 4.212 25 N -0.562 5.562 26 Si 0.813 3.187 27 H -0.195 1.195 28 H -0.199 1.199 29 H -0.198 1.198 30 H 0.133 0.867 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.074 0.926 43 H 0.127 0.873 44 H 0.084 0.916 45 H 0.120 0.880 46 H 0.227 0.773 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.340 5.054 3.407 19.326 hybrid contribution -0.656 -0.356 -0.734 1.046 sum -18.996 4.698 2.673 19.750 Atomic orbital electron populations 1.23466 0.91194 1.07637 1.05875 1.87041 1.10706 1.10552 1.98147 1.23091 0.96916 0.94412 1.05906 1.20981 0.95480 0.92201 1.02251 0.88004 1.21718 1.00479 1.02552 0.94651 1.20370 0.79477 0.91029 0.75992 1.90666 1.50002 1.54608 1.49814 1.49374 1.16558 1.09047 1.59822 1.23331 0.88106 0.94533 1.00187 1.24753 0.92879 0.93754 0.93474 0.85520 1.23999 0.96671 0.99439 0.95691 1.24245 0.95390 0.84228 0.95199 0.84305 1.24007 0.89079 0.99761 0.97066 1.65143 1.32273 1.19801 1.05816 1.22038 0.96722 0.94328 0.95706 1.20444 0.85728 0.83190 0.87268 1.90447 1.67242 1.73469 1.18238 1.41916 1.37003 1.28943 1.13060 1.19615 1.17711 1.11155 0.97277 0.89904 1.25997 1.00245 0.99060 0.95902 1.69668 1.44316 1.34342 1.07892 0.85034 0.78043 0.77695 0.77878 1.19512 1.19889 1.19789 0.86711 0.89566 0.89596 0.89684 0.89368 0.91670 0.92706 0.89928 0.89805 0.91334 0.88607 0.87482 0.92625 0.87255 0.91627 0.88016 0.77274 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 10.76 113.37 1.22 -0.17 16 2 S -0.29 -5.63 21.29 -56.49 -1.20 -6.83 16 3 C -0.05 -1.10 4.86 71.98 0.35 -0.75 16 4 C -0.09 -1.93 2.27 -11.54 -0.03 -1.96 16 5 H 0.10 2.22 7.30 -2.39 -0.02 2.20 16 6 C -0.14 -3.05 8.91 71.98 0.64 -2.41 16 7 C 0.54 14.01 6.97 87.66 0.61 14.62 16 8 O -0.57 -17.59 16.61 -3.02 -0.05 -17.64 16 9 N -0.61 -14.90 2.95 -767.74 -2.26 -17.16 16 10 C 0.06 1.63 5.41 87.17 0.47 2.10 16 11 C 0.06 1.70 4.12 46.85 0.19 1.89 16 12 H 0.13 4.44 6.34 -2.39 -0.02 4.43 16 13 C -0.12 -2.48 6.84 33.58 0.23 -2.25 16 14 C 0.11 2.41 5.23 47.05 0.25 2.65 16 15 H 0.14 2.69 8.08 -2.39 -0.02 2.67 16 16 C 0.03 0.68 6.34 86.80 0.55 1.23 16 17 N -0.51 -15.23 5.21 -840.23 -4.38 -19.61 16 18 C 0.04 1.46 4.74 85.56 0.41 1.87 16 19 C 0.45 19.96 7.44 87.66 0.65 20.61 16 20 O -0.61 -30.73 13.56 -3.07 -0.04 -30.77 16 21 N -0.57 -28.18 5.29 -306.98 -1.62 -29.80 16 22 C -0.33 -17.91 9.68 84.04 0.81 -17.09 16 23 H 0.08 4.78 7.16 -2.91 -0.02 4.75 16 24 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 25 N -0.92 -48.92 13.05 21.66 0.28 -48.64 16 26 Si 0.99 42.00 29.55 68.60 2.03 44.02 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 28 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 29 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 30 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.09 1.85 8.02 -2.39 -0.02 1.83 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.05 1.31 7.67 -2.39 -0.02 1.29 16 37 H 0.08 1.81 7.33 -2.39 -0.02 1.79 16 38 H 0.08 2.02 7.77 -2.39 -0.02 2.01 16 39 H 0.07 2.03 4.70 -2.39 -0.01 2.02 16 40 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 42 H 0.06 1.37 7.66 -2.39 -0.02 1.36 16 43 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.07 2.06 5.66 -2.39 -0.01 2.05 16 45 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 46 H 0.39 18.76 7.90 -92.71 -0.73 18.03 16 47 H 0.28 13.87 8.31 -92.70 -0.77 13.10 16 Total: -1.00 -65.22 385.07 -0.17 -65.39 By element: Atomic # 1 Polarization: 40.63 SS G_CDS: 0.25 Total: 40.88 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: 6.82 Total: 20.15 kcal Atomic # 7 Polarization: -107.23 SS G_CDS: -7.98 Total: -115.21 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -0.09 Total: -48.41 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 16 Polarization: -5.63 SS G_CDS: -1.20 Total: -6.83 kcal Total: -65.22 -0.17 -65.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318189735.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.309 kcal (2) G-P(sol) polarization free energy of solvation -65.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds