Wall clock time and date at job start Wed Apr 1 2020 00:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47004 * 2 1 4 4 C 1.50696 * 109.47507 * 240.00363 * 2 1 3 5 5 N 1.34779 * 120.00123 * 59.99475 * 4 2 1 6 6 O 1.21281 * 119.99872 * 240.00149 * 4 2 1 7 7 N 1.46900 * 109.47227 * 120.00031 * 2 1 3 8 8 C 1.48039 * 111.00056 * 180.02562 * 7 2 1 9 9 C 1.53504 * 86.04463 * 137.28837 * 8 7 2 10 10 C 1.48048 * 110.99699 * 279.44751 * 7 2 1 11 11 C 1.52675 * 113.56765 * 90.91325 * 9 8 7 12 12 C 1.53337 * 109.10986 * 73.77333 * 11 9 8 13 13 N 1.46884 * 108.76404 * 52.41163 * 12 11 9 14 14 C 1.34775 * 120.46258 * 124.47478 * 13 12 11 15 15 O 1.21282 * 120.00577 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99768 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47349 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00182 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99976 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99949 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99849 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00065 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46755 * 90.00066 * 22 20 18 24 24 H 1.48495 * 109.46931 * 210.00080 * 22 20 18 25 25 H 1.48500 * 109.46738 * 330.00322 * 22 20 18 26 26 C 1.46876 * 119.06776 * 304.75092 * 13 12 11 27 27 C 1.52679 * 113.55728 * 222.09995 * 9 8 7 28 28 H 1.09006 * 109.46855 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47501 * 300.00115 * 1 2 3 30 30 H 1.09004 * 109.47070 * 60.00200 * 1 2 3 31 31 H 0.96994 * 120.00161 * 0.02562 * 5 4 2 32 32 H 0.97001 * 119.99636 * 180.02562 * 5 4 2 33 33 H 1.09002 * 113.78642 * 23.00422 * 8 7 2 34 34 H 1.08995 * 113.88431 * 251.58416 * 8 7 2 35 35 H 1.08997 * 113.78348 * 108.42026 * 10 7 2 36 36 H 1.09001 * 113.78187 * 336.98313 * 10 7 2 37 37 H 1.09005 * 109.53199 * 313.88592 * 11 9 8 38 38 H 1.09003 * 109.59620 * 193.69994 * 11 9 8 39 39 H 1.09003 * 109.58894 * 292.62866 * 12 11 9 40 40 H 1.09000 * 109.59023 * 172.19761 * 12 11 9 41 41 H 1.09005 * 109.46867 * 60.00428 * 16 14 13 42 42 H 1.09000 * 109.47235 * 300.00468 * 16 14 13 43 43 H 0.97005 * 119.99878 * 179.97438 * 21 20 18 44 44 H 1.09007 * 109.59171 * 175.03340 * 26 13 12 45 45 H 1.08993 * 109.59163 * 295.46531 * 26 13 12 46 46 H 1.09006 * 109.52959 * 46.11669 * 27 9 8 47 47 H 1.09002 * 109.53333 * 166.33577 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 7 1.7068 -0.2498 -2.4546 6 8 2.7297 -1.6964 -1.1192 7 7 2.0197 -0.6925 1.1994 8 6 3.4995 -0.7117 1.2339 9 6 3.3632 -0.3734 2.7250 10 6 1.9826 0.2004 2.3798 11 6 3.3064 -1.6036 3.6274 12 6 4.7060 -2.2230 3.7204 13 7 5.6604 -1.1774 4.1117 14 6 6.4406 -1.3365 5.1991 15 8 6.3579 -2.3488 5.8620 16 6 7.4167 -0.2571 5.5906 17 16 8.3106 -0.7636 7.0808 18 6 9.3502 0.6410 7.3062 19 1 9.2968 1.4689 6.6147 20 6 10.2371 0.6840 8.3731 21 7 10.3018 -0.3249 9.2161 22 14 11.3398 2.1728 8.6117 23 1 10.6479 3.1688 9.4687 24 1 12.6053 1.7518 9.2648 25 1 11.6426 2.7811 7.2913 26 6 5.7482 0.0468 3.3048 27 6 4.3599 0.6786 3.2056 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.1494 0.5389 -2.5436 32 1 2.0299 -0.7073 -3.2465 33 1 3.9633 0.0792 0.6444 34 1 3.9327 -1.6937 1.0438 35 1 1.2071 -0.0567 3.1012 36 1 1.9977 1.2611 2.1292 37 1 2.6127 -2.3320 3.2072 38 1 2.9701 -1.3120 4.6224 39 1 4.9896 -2.6325 2.7509 40 1 4.7057 -3.0160 4.4683 41 1 6.8752 0.6681 5.7881 42 1 8.1260 -0.0967 4.7787 43 1 10.9219 -0.2950 9.9615 44 1 6.4343 0.7487 3.7789 45 1 6.1068 -0.1992 2.3054 46 1 4.3848 1.5072 2.4978 47 1 4.0582 1.0451 4.1868 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319391777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:38 Heat of formation + Delta-G solvation = -36.512511 kcal Electronic energy + Delta-G solvation = -27792.401214 eV Core-core repulsion = 23909.349520 eV Total energy + Delta-G solvation = -3883.051694 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.52690 -39.81101 -38.87024 -36.23892 -34.44829 -33.23861 -32.40804 -31.64312 -30.67451 -28.78402 -26.93474 -25.65006 -25.43530 -24.35809 -23.36451 -22.30582 -20.38798 -19.76783 -18.17637 -18.03497 -17.50136 -17.26269 -16.65020 -15.96801 -15.64149 -15.57701 -15.26516 -15.05303 -14.81142 -14.78638 -14.07807 -13.94158 -13.63496 -13.59898 -13.38243 -13.04622 -12.82878 -12.78827 -12.63169 -12.36960 -12.25710 -12.01116 -11.80774 -11.71340 -11.29916 -11.04978 -11.00292 -10.77703 -10.71997 -10.67813 -10.45292 -10.13906 -10.08632 -9.77690 -9.28809 -9.08660 -9.04747 -8.40960 -8.18884 -6.47156 -6.19472 -3.89673 2.21225 2.92568 3.00883 3.12534 3.23261 3.27782 3.31721 3.53345 3.64978 4.07591 4.21788 4.23801 4.37887 4.52141 4.53667 4.69401 4.74598 4.93180 5.02665 5.04474 5.11091 5.15420 5.20221 5.23442 5.27309 5.38461 5.43275 5.55278 5.56651 5.61503 5.66163 5.71774 5.79224 5.89588 5.91368 5.94825 6.04932 6.10581 6.15342 6.18932 6.29872 6.59654 6.75799 6.87564 7.61073 7.65461 7.83225 8.37083 8.64366 9.25600 10.87902 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025156 B = 0.002107 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.773772 B =13285.606609 C =13659.903343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.026 3.974 3 H 0.073 0.927 4 C 0.519 3.481 5 N -0.858 5.858 6 O -0.522 6.522 7 N -0.455 5.455 8 C 0.028 3.972 9 C -0.085 4.085 10 C 0.010 3.990 11 C -0.103 4.103 12 C 0.114 3.886 13 N -0.617 5.617 14 C 0.534 3.466 15 O -0.518 6.518 16 C -0.150 4.150 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.111 3.889 27 C -0.122 4.122 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.400 0.600 32 H 0.402 0.598 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.090 0.910 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.695 5.845 -23.433 32.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.086 4.086 3 H 0.090 0.910 4 C 0.303 3.697 5 N -0.423 5.423 6 O -0.396 6.396 7 N -0.178 5.178 8 C -0.100 4.100 9 C -0.085 4.085 10 C -0.118 4.118 11 C -0.141 4.141 12 C -0.009 4.009 13 N -0.354 5.354 14 C 0.322 3.678 15 O -0.392 6.392 16 C -0.301 4.301 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.013 4.013 27 C -0.161 4.161 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.228 0.772 32 H 0.233 0.767 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.108 0.892 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.655 3.004 -22.031 31.037 hybrid contribution 0.956 3.377 -1.333 3.754 sum -20.699 6.381 -23.364 31.860 Atomic orbital electron populations 1.21690 0.91757 1.03554 1.02438 1.22261 0.98160 0.96873 0.91316 0.90985 1.20498 0.79747 0.84518 0.84936 1.43876 1.56369 1.33923 1.08100 1.90783 1.36788 1.25485 1.86506 1.68603 1.11694 1.37114 1.00408 1.23881 0.88890 1.02887 0.94391 1.21995 0.94565 0.96515 0.95459 1.24089 0.98149 0.95763 0.93829 1.21613 0.97410 0.95991 0.99122 1.21518 0.87418 0.90960 1.00993 1.48046 1.40073 1.19068 1.28189 1.20316 0.80421 0.87950 0.79090 1.90687 1.67504 1.29697 1.51357 1.23550 1.00359 1.00041 1.06102 1.85415 1.45221 1.27259 1.25587 1.22857 1.25016 1.04815 1.15570 0.90998 1.24995 0.96702 0.97043 0.94894 1.70023 1.35925 1.30076 1.14219 0.86174 0.79439 0.81489 0.78430 1.20297 1.20764 1.19722 1.21550 0.97091 0.86758 0.95898 1.21828 0.94930 0.97019 1.02299 0.91121 0.91241 0.91983 0.77211 0.76689 0.91855 0.88427 0.88937 0.91127 0.89735 0.91188 0.91759 0.88732 0.89373 0.89366 0.92209 0.89174 0.91617 0.90927 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 9.27 37.16 0.34 -0.29 16 2 C 0.03 0.17 2.13 -68.87 -0.15 0.02 16 3 H 0.07 0.36 7.62 -51.93 -0.40 -0.04 16 4 C 0.52 4.20 7.15 -10.99 -0.08 4.12 16 5 N -0.86 -3.45 8.77 31.22 0.27 -3.18 16 6 O -0.52 -6.63 15.60 5.56 0.09 -6.55 16 7 N -0.45 -3.93 5.61 -233.56 -1.31 -5.24 16 8 C 0.03 0.26 4.93 -2.94 -0.01 0.25 16 9 C -0.08 -0.75 0.77 -154.42 -0.12 -0.87 16 10 C 0.01 0.08 6.73 -2.97 -0.02 0.06 16 11 C -0.10 -1.10 5.22 -26.72 -0.14 -1.24 16 12 C 0.11 1.49 6.30 -3.66 -0.02 1.47 16 13 N -0.62 -9.09 2.95 -172.96 -0.51 -9.60 16 14 C 0.53 10.46 7.71 -10.98 -0.08 10.37 16 15 O -0.52 -12.18 15.25 5.56 0.08 -12.09 16 16 C -0.15 -3.10 4.49 36.01 0.16 -2.94 16 17 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 18 C -0.53 -15.30 9.50 30.94 0.29 -15.01 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 22 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 C 0.11 1.24 6.19 -3.91 -0.02 1.22 16 27 C -0.12 -1.10 5.24 -26.97 -0.14 -1.24 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.30 7.91 -51.93 -0.41 -0.11 16 30 H 0.06 0.15 7.57 -51.93 -0.39 -0.25 16 31 H 0.40 0.39 8.25 -40.82 -0.34 0.06 16 32 H 0.40 1.40 8.93 -40.82 -0.36 1.04 16 33 H 0.06 0.56 7.83 -51.93 -0.41 0.15 16 34 H 0.10 1.14 7.07 -51.93 -0.37 0.78 16 35 H 0.09 0.67 8.09 -51.93 -0.42 0.25 16 36 H 0.07 0.41 7.57 -51.93 -0.39 0.02 16 37 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.79 7.49 -51.93 -0.39 0.40 16 40 H 0.09 1.42 6.98 -51.93 -0.36 1.06 16 41 H 0.09 1.68 7.71 -51.91 -0.40 1.28 16 42 H 0.09 1.70 7.91 -51.92 -0.41 1.29 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.09 1.03 5.89 -51.93 -0.31 0.73 16 45 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 46 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 385.52 15.07 5.81 5.81 Total: -1.00 -37.30 385.52 -9.58 -46.88 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -7.42 Total: -0.91 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -0.09 Total: -2.07 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: -0.81 Total: -43.62 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.17 Total: -18.64 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.30 -9.58 -46.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319391777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.363 kcal (2) G-P(sol) polarization free energy of solvation -37.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds