Wall clock time and date at job start Wed Apr 1 2020 00:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47004 * 2 1 4 4 C 1.50696 * 109.47507 * 240.00363 * 2 1 3 5 5 N 1.34779 * 120.00123 * 59.99475 * 4 2 1 6 6 O 1.21281 * 119.99872 * 240.00149 * 4 2 1 7 7 N 1.46900 * 109.47227 * 120.00031 * 2 1 3 8 8 C 1.48039 * 111.00056 * 180.02562 * 7 2 1 9 9 C 1.53504 * 86.04463 * 137.28837 * 8 7 2 10 10 C 1.48048 * 110.99699 * 279.44751 * 7 2 1 11 11 C 1.52675 * 113.56765 * 90.91325 * 9 8 7 12 12 C 1.53337 * 109.10986 * 73.77333 * 11 9 8 13 13 N 1.46884 * 108.76404 * 52.41163 * 12 11 9 14 14 C 1.34775 * 120.46258 * 124.47478 * 13 12 11 15 15 O 1.21282 * 120.00577 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99768 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47349 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00182 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99976 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99949 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99849 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00065 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46755 * 90.00066 * 22 20 18 24 24 H 1.48495 * 109.46931 * 210.00080 * 22 20 18 25 25 H 1.48500 * 109.46738 * 330.00322 * 22 20 18 26 26 C 1.46876 * 119.06776 * 304.75092 * 13 12 11 27 27 C 1.52679 * 113.55728 * 222.09995 * 9 8 7 28 28 H 1.09006 * 109.46855 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47501 * 300.00115 * 1 2 3 30 30 H 1.09004 * 109.47070 * 60.00200 * 1 2 3 31 31 H 0.96994 * 120.00161 * 0.02562 * 5 4 2 32 32 H 0.97001 * 119.99636 * 180.02562 * 5 4 2 33 33 H 1.09002 * 113.78642 * 23.00422 * 8 7 2 34 34 H 1.08995 * 113.88431 * 251.58416 * 8 7 2 35 35 H 1.08997 * 113.78348 * 108.42026 * 10 7 2 36 36 H 1.09001 * 113.78187 * 336.98313 * 10 7 2 37 37 H 1.09005 * 109.53199 * 313.88592 * 11 9 8 38 38 H 1.09003 * 109.59620 * 193.69994 * 11 9 8 39 39 H 1.09003 * 109.58894 * 292.62866 * 12 11 9 40 40 H 1.09000 * 109.59023 * 172.19761 * 12 11 9 41 41 H 1.09005 * 109.46867 * 60.00428 * 16 14 13 42 42 H 1.09000 * 109.47235 * 300.00468 * 16 14 13 43 43 H 0.97005 * 119.99878 * 179.97438 * 21 20 18 44 44 H 1.09007 * 109.59171 * 175.03340 * 26 13 12 45 45 H 1.08993 * 109.59163 * 295.46531 * 26 13 12 46 46 H 1.09006 * 109.52959 * 46.11669 * 27 9 8 47 47 H 1.09002 * 109.53333 * 166.33577 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 7 1.7068 -0.2498 -2.4546 6 8 2.7297 -1.6964 -1.1192 7 7 2.0197 -0.6925 1.1994 8 6 3.4995 -0.7117 1.2339 9 6 3.3632 -0.3734 2.7250 10 6 1.9826 0.2004 2.3798 11 6 3.3064 -1.6036 3.6274 12 6 4.7060 -2.2230 3.7204 13 7 5.6604 -1.1774 4.1117 14 6 6.4406 -1.3365 5.1991 15 8 6.3579 -2.3488 5.8620 16 6 7.4167 -0.2571 5.5906 17 16 8.3106 -0.7636 7.0808 18 6 9.3502 0.6410 7.3062 19 1 9.2968 1.4689 6.6147 20 6 10.2371 0.6840 8.3731 21 7 10.3018 -0.3249 9.2161 22 14 11.3398 2.1728 8.6117 23 1 10.6479 3.1688 9.4687 24 1 12.6053 1.7518 9.2648 25 1 11.6426 2.7811 7.2913 26 6 5.7482 0.0468 3.3048 27 6 4.3599 0.6786 3.2056 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.1494 0.5389 -2.5436 32 1 2.0299 -0.7073 -3.2465 33 1 3.9633 0.0792 0.6444 34 1 3.9327 -1.6937 1.0438 35 1 1.2071 -0.0567 3.1012 36 1 1.9977 1.2611 2.1292 37 1 2.6127 -2.3320 3.2072 38 1 2.9701 -1.3120 4.6224 39 1 4.9896 -2.6325 2.7509 40 1 4.7057 -3.0160 4.4683 41 1 6.8752 0.6681 5.7881 42 1 8.1260 -0.0967 4.7787 43 1 10.9219 -0.2950 9.9615 44 1 6.4343 0.7487 3.7789 45 1 6.1068 -0.1992 2.3054 46 1 4.3848 1.5072 2.4978 47 1 4.0582 1.0451 4.1868 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319391777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:37 Heat of formation + Delta-G solvation = -66.880883 kcal Electronic energy + Delta-G solvation = -27793.718085 eV Core-core repulsion = 23909.349520 eV Total energy + Delta-G solvation = -3884.368566 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.24454 -40.85125 -39.85076 -37.37437 -35.06228 -34.57755 -33.97333 -32.67844 -31.53020 -30.15684 -27.73852 -27.53152 -26.30926 -25.04790 -24.34709 -23.15695 -21.05756 -20.84566 -19.78270 -18.84955 -18.51980 -17.97818 -17.80209 -16.96752 -16.86432 -16.71344 -16.51867 -16.26087 -15.88073 -15.69645 -15.46019 -14.98840 -14.72666 -14.53475 -14.45036 -14.18571 -13.94979 -13.65382 -13.43522 -13.32601 -13.16890 -13.14787 -12.90505 -12.87455 -12.67234 -12.58267 -12.41800 -12.17765 -11.72063 -11.57546 -11.45662 -11.20414 -11.13464 -10.84062 -10.73307 -10.62240 -10.24939 -9.71721 -9.59761 -8.66905 -8.33613 -6.12229 1.26234 1.43314 1.46648 1.57262 1.58369 1.65139 2.12179 2.28216 2.48116 2.96562 3.00334 3.25668 3.37399 3.57840 3.74434 3.85470 3.92391 4.06609 4.09180 4.13060 4.20110 4.25687 4.29674 4.43782 4.46923 4.51826 4.55396 4.60678 4.73556 4.75914 4.82907 4.86802 4.91882 4.98932 5.03477 5.12155 5.20910 5.30153 5.31988 5.41876 5.42351 5.60941 5.89048 6.06939 6.20566 6.31766 6.50533 7.07220 7.15581 7.37904 8.75646 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025156 B = 0.002107 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.773772 B =13285.606609 C =13659.903343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.026 3.974 3 H 0.098 0.902 4 C 0.513 3.487 5 N -0.838 5.838 6 O -0.578 6.578 7 N -0.476 5.476 8 C 0.034 3.966 9 C -0.085 4.085 10 C 0.023 3.977 11 C -0.093 4.093 12 C 0.113 3.887 13 N -0.603 5.603 14 C 0.531 3.469 15 O -0.569 6.569 16 C -0.121 4.121 17 S -0.155 6.155 18 C -0.544 4.544 19 H 0.084 0.916 20 C 0.011 3.989 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.267 1.267 24 H -0.279 1.279 25 H -0.257 1.257 26 C 0.100 3.900 27 C -0.114 4.114 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.417 0.583 32 H 0.406 0.594 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.271 0.729 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.104 0.896 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.947 9.637 -25.812 35.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.086 4.086 3 H 0.115 0.885 4 C 0.298 3.702 5 N -0.403 5.403 6 O -0.457 6.457 7 N -0.200 5.200 8 C -0.094 4.094 9 C -0.085 4.085 10 C -0.105 4.105 11 C -0.131 4.131 12 C -0.010 4.010 13 N -0.337 5.337 14 C 0.319 3.681 15 O -0.448 6.448 16 C -0.272 4.272 17 S 0.072 5.928 18 C -0.691 4.691 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.192 1.192 24 H -0.204 1.204 25 H -0.181 1.181 26 C -0.022 4.022 27 C -0.152 4.152 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.249 0.751 32 H 0.237 0.763 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.080 0.920 44 H 0.110 0.890 45 H 0.100 0.900 46 H 0.123 0.877 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.974 6.859 -24.494 34.275 hybrid contribution 1.215 2.159 -0.774 2.595 sum -21.759 9.017 -25.268 34.543 Atomic orbital electron populations 1.21699 0.90331 1.02770 1.04208 1.22367 0.99145 0.97444 0.89622 0.88465 1.20901 0.79054 0.83924 0.86340 1.43732 1.55392 1.34001 1.07146 1.90768 1.39533 1.28008 1.87359 1.68559 1.11034 1.38564 1.01842 1.23716 0.89686 1.01582 0.94465 1.21932 0.96199 0.95711 0.94701 1.24074 0.96529 0.96832 0.93101 1.21487 0.95262 0.97014 0.99348 1.21597 0.88738 0.90296 1.00322 1.48056 1.38546 1.20472 1.26631 1.20184 0.80854 0.87007 0.80074 1.90669 1.69213 1.31433 1.53525 1.23355 1.00278 1.00906 1.02669 1.85636 1.47150 1.29327 1.30664 1.23185 1.25104 1.04767 1.16088 0.89808 1.26165 0.98308 1.00529 0.94324 1.70197 1.36997 1.32646 1.14989 0.84931 0.76888 0.76987 0.79025 1.19190 1.20414 1.18084 1.21903 0.99161 0.85217 0.95896 1.21811 0.92866 0.97527 1.03036 0.93164 0.90430 0.89293 0.75141 0.76265 0.90832 0.91435 0.88836 0.88577 0.89646 0.91906 0.90887 0.91360 0.87258 0.87588 0.92030 0.88974 0.90000 0.87726 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 9.27 71.98 0.67 -0.16 16 2 C 0.03 0.26 2.13 44.17 0.09 0.36 16 3 H 0.10 0.51 7.62 -2.38 -0.02 0.49 16 4 C 0.51 7.38 7.15 87.66 0.63 8.01 16 5 N -0.84 -4.69 8.77 -173.53 -1.52 -6.21 16 6 O -0.58 -14.58 15.60 -3.03 -0.05 -14.62 16 7 N -0.48 -7.23 5.61 -892.86 -5.01 -12.24 16 8 C 0.03 0.58 4.93 86.25 0.42 1.01 16 9 C -0.08 -1.32 0.77 -52.05 -0.04 -1.36 16 10 C 0.02 0.26 6.73 86.23 0.58 0.84 16 11 C -0.09 -1.94 5.22 30.60 0.16 -1.78 16 12 C 0.11 3.02 6.30 86.42 0.54 3.57 16 13 N -0.60 -17.54 2.95 -819.50 -2.42 -19.95 16 14 C 0.53 21.17 7.71 87.66 0.68 21.84 16 15 O -0.57 -28.15 15.25 -3.04 -0.05 -28.19 16 16 C -0.12 -4.98 4.49 71.24 0.32 -4.66 16 17 S -0.16 -8.82 20.57 -56.49 -1.16 -9.98 16 18 C -0.54 -31.27 9.50 67.96 0.65 -30.63 16 19 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 20 C 0.01 0.65 5.49 84.86 0.47 1.12 16 21 N -0.91 -56.63 13.22 21.65 0.29 -56.34 16 22 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 26 C 0.10 2.02 6.19 86.26 0.53 2.56 16 27 C -0.11 -1.67 5.24 30.44 0.16 -1.51 16 28 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.08 0.39 7.91 -2.39 -0.02 0.37 16 30 H 0.09 0.06 7.57 -2.38 -0.02 0.04 16 31 H 0.42 -0.63 8.25 -92.71 -0.76 -1.40 16 32 H 0.41 2.07 8.93 -92.71 -0.83 1.24 16 33 H 0.07 1.09 7.83 -2.39 -0.02 1.07 16 34 H 0.07 1.58 7.07 -2.39 -0.02 1.56 16 35 H 0.09 1.08 8.09 -2.39 -0.02 1.06 16 36 H 0.10 0.63 7.57 -2.39 -0.02 0.61 16 37 H 0.09 1.78 8.01 -2.38 -0.02 1.76 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.84 7.49 -2.39 -0.02 1.82 16 40 H 0.07 2.20 6.98 -2.39 -0.02 2.19 16 41 H 0.11 4.02 7.71 -2.39 -0.02 4.00 16 42 H 0.11 3.97 7.91 -2.40 -0.02 3.95 16 43 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 44 H 0.09 1.85 5.89 -2.38 -0.01 1.84 16 45 H 0.08 1.45 8.07 -2.39 -0.02 1.43 16 46 H 0.10 0.95 8.12 -2.38 -0.02 0.93 16 47 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -86.16 385.52 -2.63 -88.79 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -0.60 Total: 13.82 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 5.86 Total: -0.80 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -8.66 Total: -94.74 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -0.09 Total: -42.82 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.16 Total: -9.98 kcal Total: -86.16 -2.63 -88.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319391777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.908 kcal (2) G-P(sol) polarization free energy of solvation -86.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds