Wall clock time and date at job start Wed Apr 1 2020 00:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47523 * 2 1 4 4 C 1.50703 * 109.47165 * 120.00085 * 2 1 3 5 5 N 1.34773 * 120.00320 * 273.60614 * 4 2 1 6 6 O 1.21284 * 119.99469 * 93.61021 * 4 2 1 7 7 N 1.46900 * 109.47021 * 240.00513 * 2 1 3 8 8 C 1.48042 * 111.00373 * 68.05892 * 7 2 1 9 9 C 1.53504 * 86.04666 * 137.29008 * 8 7 2 10 10 C 1.48055 * 111.00082 * 167.50230 * 7 2 1 11 11 C 1.52674 * 113.56627 * 90.91611 * 9 8 7 12 12 C 1.53331 * 109.11172 * 73.77403 * 11 9 8 13 13 N 1.46878 * 108.76272 * 52.41352 * 12 11 9 14 14 C 1.34780 * 120.47056 * 124.47915 * 13 12 11 15 15 O 1.21277 * 119.99585 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00324 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.47088 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99732 * 180.02562 * 17 16 14 19 19 H 1.07994 * 120.00368 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99705 * 180.02562 * 18 17 16 21 21 N 1.31629 * 119.99916 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99969 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46953 * 59.99807 * 22 20 18 24 24 H 1.48501 * 109.47159 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47174 * 299.99856 * 22 20 18 26 26 C 1.46892 * 119.06791 * 304.74597 * 13 12 11 27 27 C 1.52672 * 113.55518 * 222.10755 * 9 8 7 28 28 H 1.09000 * 109.46992 * 59.99233 * 1 2 3 29 29 H 1.08997 * 109.47418 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47032 * 299.99801 * 1 2 3 31 31 H 0.97003 * 119.99803 * 0.02562 * 5 4 2 32 32 H 0.96998 * 120.00292 * 180.02562 * 5 4 2 33 33 H 1.09002 * 113.77765 * 23.00482 * 8 7 2 34 34 H 1.09002 * 113.88328 * 251.58995 * 8 7 2 35 35 H 1.09001 * 113.77915 * 108.41492 * 10 7 2 36 36 H 1.09004 * 113.77676 * 336.98911 * 10 7 2 37 37 H 1.09001 * 109.53169 * 313.88051 * 11 9 8 38 38 H 1.09005 * 109.59147 * 193.70336 * 11 9 8 39 39 H 1.08998 * 109.58809 * 292.62552 * 12 11 9 40 40 H 1.09001 * 109.70794 * 172.26522 * 12 11 9 41 41 H 1.09001 * 109.47201 * 59.99911 * 16 14 13 42 42 H 1.09004 * 109.46990 * 299.99995 * 16 14 13 43 43 H 0.97000 * 119.99945 * 179.97438 * 21 20 18 44 44 H 1.09003 * 109.58912 * 175.03711 * 26 13 12 45 45 H 1.08994 * 109.59101 * 295.47655 * 26 13 12 46 46 H 1.08998 * 109.53739 * 46.11591 * 27 9 8 47 47 H 1.09000 * 109.53376 * 166.34030 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.1878 -0.0316 2.3843 6 8 2.2968 -1.8931 1.1823 7 7 2.0196 -0.6924 -1.1995 8 6 1.7096 0.0817 -2.4227 9 6 3.1324 -0.2710 -2.8784 10 6 3.4688 -0.4586 -1.3927 11 6 3.2109 -1.5612 -3.6909 12 6 2.6413 -1.3078 -5.0917 13 7 3.3134 -0.1370 -5.6704 14 6 3.9366 -0.2264 -6.8621 15 8 3.9453 -1.2791 -7.4643 16 6 4.6224 0.9816 -7.4463 17 16 5.3603 0.5445 -9.0403 18 6 6.0732 2.0939 -9.4825 19 1 5.9709 2.9432 -8.8234 20 6 6.7654 2.2232 -10.6787 21 7 6.8896 1.1881 -11.4824 22 14 7.5206 3.8660 -11.1480 23 1 8.5093 4.2690 -10.1159 24 1 8.2006 3.7408 -12.4622 25 1 6.4527 4.8939 -11.2386 26 6 3.3021 1.1312 -4.9292 27 6 3.8710 0.8954 -3.5302 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.9759 0.9142 2.4229 32 1 2.5114 -0.4888 3.1762 33 1 1.5568 1.1458 -2.2425 34 1 0.9279 -0.3618 -3.0394 35 1 4.0861 -1.3334 -1.1889 36 1 3.8365 0.4457 -0.9077 37 1 2.6295 -2.3393 -3.1963 38 1 4.2503 -1.8792 -3.7722 39 1 1.5704 -1.1169 -5.0217 40 1 2.8166 -2.1789 -5.7230 41 1 5.4034 1.3207 -6.7657 42 1 3.8936 1.7794 -7.5895 43 1 7.3730 1.2785 -12.3185 44 1 3.9148 1.8655 -5.4522 45 1 2.2788 1.4975 -4.8474 46 1 3.7400 1.7931 -2.9260 47 1 4.9321 0.6579 -3.6064 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319391778.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:41 Heat of formation + Delta-G solvation = -37.383806 kcal Electronic energy + Delta-G solvation = -27673.514090 eV Core-core repulsion = 23790.424613 eV Total energy + Delta-G solvation = -3883.089477 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.52986 -39.81697 -38.93819 -36.29347 -34.26631 -33.35593 -32.42354 -31.69547 -30.74304 -28.79616 -26.89005 -26.08427 -25.46129 -24.04171 -23.37460 -22.44018 -20.38706 -19.81119 -18.36293 -17.89404 -17.48155 -17.36094 -16.68621 -15.75514 -15.74012 -15.61645 -15.29383 -15.19812 -14.82656 -14.80143 -14.07908 -14.04529 -13.84074 -13.53524 -13.35367 -13.13270 -12.87834 -12.71063 -12.63569 -12.37249 -12.24876 -12.04973 -11.93571 -11.71356 -11.34364 -11.04124 -11.03694 -10.80586 -10.74131 -10.72951 -10.44937 -10.18575 -10.13118 -9.80274 -9.32370 -9.12140 -9.05539 -8.45767 -8.21342 -6.49093 -6.20791 -3.91358 2.22339 2.90552 2.97324 3.08867 3.23170 3.26152 3.29225 3.51228 3.61896 4.01764 4.20025 4.21659 4.34518 4.46212 4.56876 4.66194 4.70689 4.89273 4.93565 5.01172 5.09439 5.13994 5.16759 5.20504 5.24170 5.34032 5.38650 5.41499 5.53531 5.59706 5.63716 5.68143 5.74560 5.83210 5.87963 5.88624 6.00788 6.03244 6.12322 6.15414 6.29743 6.54955 6.71405 6.89170 7.58871 7.61052 7.85864 8.35315 8.60584 9.24095 10.86523 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026276 B = 0.002055 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.342737 B =13619.285618 C =14116.922649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.030 3.970 3 H 0.065 0.935 4 C 0.520 3.480 5 N -0.860 5.860 6 O -0.518 6.518 7 N -0.450 5.450 8 C 0.011 3.989 9 C -0.078 4.078 10 C 0.010 3.990 11 C -0.105 4.105 12 C 0.115 3.885 13 N -0.618 5.618 14 C 0.534 3.466 15 O -0.517 6.517 16 C -0.150 4.150 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.071 0.929 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.111 3.889 27 C -0.123 4.123 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.400 0.600 32 H 0.402 0.598 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.269 0.731 44 H 0.090 0.910 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.626 3.248 28.068 30.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.082 4.082 3 H 0.083 0.917 4 C 0.304 3.696 5 N -0.425 5.425 6 O -0.392 6.392 7 N -0.174 5.174 8 C -0.117 4.117 9 C -0.079 4.079 10 C -0.118 4.118 11 C -0.143 4.143 12 C -0.008 4.008 13 N -0.355 5.355 14 C 0.322 3.678 15 O -0.391 6.391 16 C -0.301 4.301 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.012 4.012 27 C -0.162 4.162 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.227 0.773 32 H 0.233 0.767 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.109 0.891 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.690 0.150 26.854 29.702 hybrid contribution 0.780 3.654 1.035 3.877 sum -11.910 3.804 27.889 30.564 Atomic orbital electron populations 1.21709 0.91517 1.03842 1.02617 1.22222 0.98184 0.96345 0.91498 0.91682 1.20468 0.77052 0.87505 0.84615 1.43930 1.71086 1.14387 1.13080 1.90775 1.48469 1.15375 1.84548 1.68616 1.06221 1.43089 0.99424 1.24070 0.98259 0.97241 0.92136 1.21906 0.95092 0.96709 0.94194 1.24041 0.91110 1.01460 0.95213 1.21635 1.02561 0.95603 0.94531 1.21508 0.95678 0.89847 0.93772 1.48061 1.55964 1.11263 1.20190 1.20325 0.77530 0.90023 0.79897 1.90689 1.58774 1.30311 1.59371 1.23550 1.02614 0.98608 1.05299 1.85423 1.67556 1.17176 1.13276 1.22812 1.40306 0.96792 1.08466 0.91040 1.24992 0.95623 0.97690 0.95293 1.70008 1.39588 1.29633 1.10995 0.86233 0.79182 0.82310 0.77816 1.19967 1.20819 1.19953 1.21553 1.01446 0.86314 0.91920 1.21841 1.00851 0.97303 0.96175 0.91116 0.90888 0.91802 0.77252 0.76747 0.91024 0.88786 0.88897 0.91424 0.89595 0.91082 0.91896 0.88697 0.89366 0.89359 0.92134 0.89149 0.91607 0.90833 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.20 37.16 0.34 -0.41 16 2 C 0.03 0.20 2.05 -68.86 -0.14 0.06 16 3 H 0.07 0.30 7.69 -51.93 -0.40 -0.10 16 4 C 0.52 4.32 6.82 -10.99 -0.07 4.25 16 5 N -0.86 -3.59 8.87 31.22 0.28 -3.31 16 6 O -0.52 -6.89 17.44 5.55 0.10 -6.79 16 7 N -0.45 -3.85 5.44 -233.50 -1.27 -5.12 16 8 C 0.01 0.08 5.77 -2.94 -0.02 0.06 16 9 C -0.08 -0.66 0.77 -154.40 -0.12 -0.78 16 10 C 0.01 0.09 6.64 -2.95 -0.02 0.07 16 11 C -0.11 -1.09 5.21 -26.73 -0.14 -1.23 16 12 C 0.11 1.40 6.30 -3.66 -0.02 1.37 16 13 N -0.62 -8.60 2.95 -172.95 -0.51 -9.11 16 14 C 0.53 10.16 7.71 -10.99 -0.08 10.08 16 15 O -0.52 -11.92 15.25 5.56 0.08 -11.84 16 16 C -0.15 -3.03 4.49 36.00 0.16 -2.87 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 19 H 0.07 1.90 7.80 -52.49 -0.41 1.50 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 22 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 26 C 0.11 1.14 6.19 -3.90 -0.02 1.12 16 27 C -0.12 -1.03 5.24 -26.97 -0.14 -1.17 16 28 H 0.07 0.33 7.45 -51.93 -0.39 -0.06 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.40 0.44 8.83 -40.82 -0.36 0.08 16 32 H 0.40 1.44 8.93 -40.82 -0.36 1.08 16 33 H 0.07 0.40 7.75 -51.93 -0.40 0.00 16 34 H 0.09 0.70 7.40 -51.93 -0.38 0.32 16 35 H 0.09 0.94 8.09 -51.93 -0.42 0.52 16 36 H 0.07 0.48 7.70 -51.93 -0.40 0.08 16 37 H 0.09 0.89 8.01 -51.93 -0.42 0.47 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.66 7.49 -51.93 -0.39 0.27 16 40 H 0.09 1.37 6.97 -51.93 -0.36 1.01 16 41 H 0.09 1.65 7.71 -51.91 -0.40 1.25 16 42 H 0.09 1.64 7.91 -51.92 -0.41 1.23 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.09 0.96 5.89 -51.93 -0.31 0.66 16 45 H 0.07 0.56 8.07 -51.93 -0.42 0.15 16 46 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 388.73 15.07 5.86 5.86 Total: -1.00 -37.48 388.73 -9.53 -47.01 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -7.48 Total: -1.33 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -0.08 Total: -2.35 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -0.77 Total: -42.96 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.18 Total: -18.63 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.48 -9.53 -47.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319391778.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.628 kcal (2) G-P(sol) polarization free energy of solvation -37.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds