Wall clock time and date at job start Wed Apr 1 2020 00:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47523 * 2 1 4 4 C 1.50703 * 109.47165 * 120.00085 * 2 1 3 5 5 N 1.34773 * 120.00320 * 273.60614 * 4 2 1 6 6 O 1.21284 * 119.99469 * 93.61021 * 4 2 1 7 7 N 1.46900 * 109.47021 * 240.00513 * 2 1 3 8 8 C 1.48042 * 111.00373 * 68.05892 * 7 2 1 9 9 C 1.53504 * 86.04666 * 137.29008 * 8 7 2 10 10 C 1.48055 * 111.00082 * 167.50230 * 7 2 1 11 11 C 1.52674 * 113.56627 * 90.91611 * 9 8 7 12 12 C 1.53331 * 109.11172 * 73.77403 * 11 9 8 13 13 N 1.46878 * 108.76272 * 52.41352 * 12 11 9 14 14 C 1.34780 * 120.47056 * 124.47915 * 13 12 11 15 15 O 1.21277 * 119.99585 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00324 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.47088 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99732 * 180.02562 * 17 16 14 19 19 H 1.07994 * 120.00368 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99705 * 180.02562 * 18 17 16 21 21 N 1.31629 * 119.99916 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99969 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46953 * 59.99807 * 22 20 18 24 24 H 1.48501 * 109.47159 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47174 * 299.99856 * 22 20 18 26 26 C 1.46892 * 119.06791 * 304.74597 * 13 12 11 27 27 C 1.52672 * 113.55518 * 222.10755 * 9 8 7 28 28 H 1.09000 * 109.46992 * 59.99233 * 1 2 3 29 29 H 1.08997 * 109.47418 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47032 * 299.99801 * 1 2 3 31 31 H 0.97003 * 119.99803 * 0.02562 * 5 4 2 32 32 H 0.96998 * 120.00292 * 180.02562 * 5 4 2 33 33 H 1.09002 * 113.77765 * 23.00482 * 8 7 2 34 34 H 1.09002 * 113.88328 * 251.58995 * 8 7 2 35 35 H 1.09001 * 113.77915 * 108.41492 * 10 7 2 36 36 H 1.09004 * 113.77676 * 336.98911 * 10 7 2 37 37 H 1.09001 * 109.53169 * 313.88051 * 11 9 8 38 38 H 1.09005 * 109.59147 * 193.70336 * 11 9 8 39 39 H 1.08998 * 109.58809 * 292.62552 * 12 11 9 40 40 H 1.09001 * 109.70794 * 172.26522 * 12 11 9 41 41 H 1.09001 * 109.47201 * 59.99911 * 16 14 13 42 42 H 1.09004 * 109.46990 * 299.99995 * 16 14 13 43 43 H 0.97000 * 119.99945 * 179.97438 * 21 20 18 44 44 H 1.09003 * 109.58912 * 175.03711 * 26 13 12 45 45 H 1.08994 * 109.59101 * 295.47655 * 26 13 12 46 46 H 1.08998 * 109.53739 * 46.11591 * 27 9 8 47 47 H 1.09000 * 109.53376 * 166.34030 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.1878 -0.0316 2.3843 6 8 2.2968 -1.8931 1.1823 7 7 2.0196 -0.6924 -1.1995 8 6 1.7096 0.0817 -2.4227 9 6 3.1324 -0.2710 -2.8784 10 6 3.4688 -0.4586 -1.3927 11 6 3.2109 -1.5612 -3.6909 12 6 2.6413 -1.3078 -5.0917 13 7 3.3134 -0.1370 -5.6704 14 6 3.9366 -0.2264 -6.8621 15 8 3.9453 -1.2791 -7.4643 16 6 4.6224 0.9816 -7.4463 17 16 5.3603 0.5445 -9.0403 18 6 6.0732 2.0939 -9.4825 19 1 5.9709 2.9432 -8.8234 20 6 6.7654 2.2232 -10.6787 21 7 6.8896 1.1881 -11.4824 22 14 7.5206 3.8660 -11.1480 23 1 8.5093 4.2690 -10.1159 24 1 8.2006 3.7408 -12.4622 25 1 6.4527 4.8939 -11.2386 26 6 3.3021 1.1312 -4.9292 27 6 3.8710 0.8954 -3.5302 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.9759 0.9142 2.4229 32 1 2.5114 -0.4888 3.1762 33 1 1.5568 1.1458 -2.2425 34 1 0.9279 -0.3618 -3.0394 35 1 4.0861 -1.3334 -1.1889 36 1 3.8365 0.4457 -0.9077 37 1 2.6295 -2.3393 -3.1963 38 1 4.2503 -1.8792 -3.7722 39 1 1.5704 -1.1169 -5.0217 40 1 2.8166 -2.1789 -5.7230 41 1 5.4034 1.3207 -6.7657 42 1 3.8936 1.7794 -7.5895 43 1 7.3730 1.2785 -12.3185 44 1 3.9148 1.8655 -5.4522 45 1 2.2788 1.4975 -4.8474 46 1 3.7400 1.7931 -2.9260 47 1 4.9321 0.6579 -3.6064 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319391778.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:40 Heat of formation + Delta-G solvation = -68.120658 kcal Electronic energy + Delta-G solvation = -27674.846940 eV Core-core repulsion = 23790.424613 eV Total energy + Delta-G solvation = -3884.422327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.21826 -40.81522 -39.90244 -37.38624 -34.90697 -34.57034 -34.05135 -32.67966 -31.57666 -30.14384 -27.67341 -27.44129 -26.78340 -24.70223 -24.27310 -23.27087 -21.08218 -20.81134 -19.77811 -18.98333 -18.35360 -17.92904 -17.91753 -16.94557 -16.85607 -16.67901 -16.35534 -16.22145 -15.95912 -15.78302 -15.45953 -14.94263 -14.83017 -14.59368 -14.45838 -14.16623 -13.92764 -13.71600 -13.42894 -13.18476 -13.16100 -13.11365 -12.95469 -12.85039 -12.74720 -12.59493 -12.37067 -12.17498 -11.72782 -11.57169 -11.47685 -11.16864 -11.11352 -10.83603 -10.81203 -10.64227 -10.23966 -9.70155 -9.56914 -8.66101 -8.32762 -6.11416 1.27271 1.45194 1.47529 1.56827 1.60630 1.64126 2.14659 2.29250 2.45409 2.97560 3.01113 3.27089 3.35045 3.57905 3.75785 3.83806 3.93876 4.04553 4.10433 4.14537 4.18208 4.27681 4.30666 4.43605 4.45583 4.52730 4.57190 4.61934 4.72933 4.74282 4.83864 4.85541 4.89592 4.95756 5.03800 5.11889 5.20211 5.27151 5.32634 5.39604 5.42770 5.63923 5.88069 6.05261 6.21002 6.33990 6.52134 7.07975 7.18290 7.38822 8.76189 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026276 B = 0.002055 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.342737 B =13619.285618 C =14116.922649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.030 3.970 3 H 0.098 0.902 4 C 0.515 3.485 5 N -0.839 5.839 6 O -0.580 6.580 7 N -0.477 5.477 8 C 0.022 3.978 9 C -0.078 4.078 10 C 0.015 3.985 11 C -0.096 4.096 12 C 0.115 3.885 13 N -0.604 5.604 14 C 0.530 3.470 15 O -0.571 6.571 16 C -0.121 4.121 17 S -0.157 6.157 18 C -0.544 4.544 19 H 0.085 0.915 20 C 0.011 3.989 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.261 1.261 24 H -0.281 1.281 25 H -0.260 1.260 26 C 0.101 3.899 27 C -0.115 4.115 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.418 0.582 32 H 0.406 0.594 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.049 0.951 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.110 0.890 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.745 7.384 30.562 34.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.082 4.082 3 H 0.116 0.884 4 C 0.299 3.701 5 N -0.404 5.404 6 O -0.459 6.459 7 N -0.201 5.201 8 C -0.105 4.105 9 C -0.079 4.079 10 C -0.114 4.114 11 C -0.135 4.135 12 C -0.007 4.007 13 N -0.338 5.338 14 C 0.318 3.682 15 O -0.450 6.450 16 C -0.272 4.272 17 S 0.070 5.930 18 C -0.692 4.692 19 H 0.103 0.897 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.186 1.186 24 H -0.206 1.206 25 H -0.185 1.185 26 C -0.020 4.020 27 C -0.153 4.153 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.249 0.751 32 H 0.237 0.763 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.079 0.921 44 H 0.108 0.892 45 H 0.115 0.885 46 H 0.128 0.872 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.843 4.360 29.439 32.822 hybrid contribution 1.037 2.330 0.454 2.591 sum -12.806 6.691 29.893 33.202 Atomic orbital electron populations 1.21711 0.90644 1.02671 1.04298 1.22323 0.98770 0.97289 0.89785 0.88397 1.20920 0.76285 0.86904 0.85972 1.43784 1.69292 1.15226 1.12114 1.90753 1.51473 1.18027 1.85602 1.68573 1.06118 1.44634 1.00787 1.24089 0.96639 0.98727 0.91095 1.21812 0.96768 0.95432 0.93846 1.23962 0.91144 1.01205 0.95056 1.21498 1.01002 0.97216 0.93739 1.21599 0.96950 0.88241 0.93893 1.48079 1.53870 1.13284 1.18538 1.20186 0.77944 0.88823 0.81253 1.90673 1.61115 1.31842 1.61364 1.23354 1.03156 0.99617 1.01055 1.85656 1.69015 1.19240 1.19093 1.23155 1.40263 0.96751 1.09006 0.89736 1.26163 0.95980 1.02081 0.95108 1.70189 1.40691 1.32402 1.11568 0.84991 0.78514 0.76832 0.77578 1.18587 1.20587 1.18466 1.21944 1.03563 0.84175 0.92359 1.21822 0.99639 0.98585 0.95289 0.89818 0.93492 0.89725 0.75095 0.76330 0.88034 0.89038 0.91659 0.89288 0.89787 0.93201 0.89361 0.91726 0.87520 0.87225 0.92056 0.89213 0.88506 0.87189 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.20 71.98 0.66 -0.39 16 2 C 0.03 0.30 2.05 44.17 0.09 0.39 16 3 H 0.10 0.35 7.69 -2.38 -0.02 0.33 16 4 C 0.51 7.69 6.82 87.66 0.60 8.29 16 5 N -0.84 -4.91 8.87 -173.53 -1.54 -6.45 16 6 O -0.58 -15.54 17.44 -3.04 -0.05 -15.60 16 7 N -0.48 -7.06 5.44 -892.66 -4.86 -11.92 16 8 C 0.02 0.23 5.77 86.25 0.50 0.73 16 9 C -0.08 -1.12 0.77 -52.05 -0.04 -1.16 16 10 C 0.01 0.22 6.64 86.24 0.57 0.79 16 11 C -0.10 -1.98 5.21 30.60 0.16 -1.82 16 12 C 0.12 2.77 6.30 86.42 0.54 3.32 16 13 N -0.60 -16.09 2.95 -819.49 -2.42 -18.51 16 14 C 0.53 20.34 7.71 87.66 0.68 21.02 16 15 O -0.57 -27.63 15.25 -3.02 -0.05 -27.67 16 16 C -0.12 -4.82 4.49 71.24 0.32 -4.50 16 17 S -0.16 -8.83 20.57 -56.49 -1.16 -10.00 16 18 C -0.54 -30.93 9.50 67.96 0.65 -30.29 16 19 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 20 C 0.01 0.64 5.49 84.86 0.47 1.11 16 21 N -0.91 -56.33 13.22 21.65 0.29 -56.04 16 22 Si 1.00 43.25 29.55 68.60 2.03 45.27 16 23 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 24 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 26 C 0.10 1.72 6.19 86.26 0.53 2.25 16 27 C -0.11 -1.50 5.24 30.44 0.16 -1.34 16 28 H 0.08 0.44 7.45 -2.39 -0.02 0.42 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 0.29 8.14 -2.38 -0.02 0.27 16 31 H 0.42 -0.62 8.83 -92.71 -0.82 -1.44 16 32 H 0.41 2.17 8.93 -92.71 -0.83 1.34 16 33 H 0.10 0.48 7.75 -2.39 -0.02 0.46 16 34 H 0.09 1.03 7.40 -2.39 -0.02 1.01 16 35 H 0.06 1.33 8.09 -2.39 -0.02 1.31 16 36 H 0.09 0.92 7.70 -2.38 -0.02 0.90 16 37 H 0.08 1.77 8.01 -2.39 -0.02 1.75 16 38 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.09 1.71 7.49 -2.39 -0.02 1.69 16 40 H 0.06 1.97 6.97 -2.39 -0.02 1.96 16 41 H 0.11 3.84 7.71 -2.40 -0.02 3.82 16 42 H 0.11 3.89 7.91 -2.39 -0.02 3.87 16 43 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 44 H 0.09 1.58 5.89 -2.39 -0.01 1.57 16 45 H 0.10 1.15 8.07 -2.39 -0.02 1.13 16 46 H 0.11 0.73 8.12 -2.39 -0.02 0.71 16 47 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -87.99 388.73 -2.53 -90.52 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -0.65 Total: 11.99 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 5.89 Total: -1.59 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -8.53 Total: -92.92 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -0.10 Total: -43.27 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.16 Total: -10.00 kcal Total: -87.99 -2.53 -90.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319391778.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.394 kcal (2) G-P(sol) polarization free energy of solvation -87.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds