Wall clock time and date at job start Wed Apr 1 2020 00:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99540 * 2 1 3 5 5 C 1.34327 * 126.43838 * 119.71235 * 4 2 1 6 6 N 1.34479 * 107.66308 * 179.88106 * 5 4 2 7 7 C 1.30256 * 108.70581 * 0.39236 * 6 5 4 8 8 C 1.50693 * 125.62308 * 179.73930 * 7 6 5 9 9 N 1.46905 * 109.47411 * 90.02592 * 8 7 6 10 10 C 1.46898 * 111.00163 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46961 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47013 * 65.00253 * 11 10 9 13 13 C 1.53005 * 109.47005 * 184.99713 * 11 10 9 14 14 N 1.46496 * 109.47431 * 304.99812 * 11 10 9 15 15 C 1.34776 * 119.99925 * 155.00105 * 14 11 10 16 16 O 1.21282 * 120.00078 * 359.97438 * 15 14 11 17 17 C 1.50701 * 119.99816 * 180.02562 * 15 14 11 18 18 S 1.80995 * 109.47092 * 179.97438 * 17 15 14 19 19 C 1.76199 * 99.99970 * 179.97438 * 18 17 15 20 20 H 1.07992 * 120.00225 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00174 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99972 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47121 * 59.99789 * 23 21 19 25 25 H 1.48495 * 109.47121 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46805 * 300.00129 * 23 21 19 27 27 O 1.33971 * 108.75418 * 359.75563 * 7 6 5 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 32 32 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 35 35 H 1.08001 * 126.17106 * 0.02562 * 5 4 2 36 36 H 1.09002 * 109.47301 * 210.02019 * 8 7 6 37 37 H 1.08992 * 109.47055 * 330.02333 * 8 7 6 38 38 H 1.00901 * 110.99430 * 303.95476 * 9 8 7 39 39 H 1.08999 * 109.46725 * 299.99476 * 10 9 8 40 40 H 1.08995 * 109.47034 * 59.99882 * 10 9 8 41 41 H 1.08998 * 109.46762 * 180.02562 * 13 11 10 42 42 H 1.09002 * 109.46967 * 300.00089 * 13 11 10 43 43 H 1.09000 * 109.47076 * 59.99954 * 13 11 10 44 44 H 0.97002 * 119.99996 * 335.00144 * 14 11 10 45 45 H 1.09000 * 109.47285 * 299.99722 * 17 15 14 46 46 H 1.09000 * 109.47439 * 59.99630 * 17 15 14 47 47 H 0.96999 * 119.99732 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 2.8033 -1.8100 1.2582 6 7 3.0276 -2.1188 2.5477 7 6 2.4128 -1.2498 3.2984 8 6 2.4055 -1.2411 4.8053 9 7 3.5338 -0.4383 5.2959 10 6 3.5589 -0.4078 6.7643 11 6 4.7453 0.4351 7.2366 12 1 4.6004 1.4708 6.9290 13 6 4.8455 0.3654 8.7618 14 7 5.9799 -0.0828 6.6419 15 6 7.0426 0.7301 6.4802 16 8 6.9767 1.8906 6.8266 17 6 8.3124 0.1974 5.8679 18 16 9.5442 1.5211 5.7860 19 6 10.8860 0.6454 5.0528 20 1 10.7766 -0.3995 4.8029 21 6 12.0835 1.2987 4.7965 22 7 12.2170 2.5722 5.1015 23 14 13.5064 0.3702 4.0199 24 1 13.0913 -0.1520 2.6932 25 1 14.6627 1.2865 3.8522 26 1 13.8962 -0.7625 4.8977 27 8 1.7878 -0.3652 2.5099 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 3.1776 -2.3478 0.3996 36 1 1.4703 -0.8092 5.1616 37 1 2.4982 -2.2622 5.1749 38 1 4.4083 -0.7802 4.9266 39 1 2.6317 0.0297 7.1345 40 1 3.6599 -1.4232 7.1472 41 1 5.6903 0.9662 9.0982 42 1 3.9268 0.7508 9.2042 43 1 4.9902 -0.6703 9.0693 44 1 6.0324 -1.0108 6.3645 45 1 8.6962 -0.6190 6.4797 46 1 8.1053 -0.1685 4.8623 47 1 13.0538 3.0287 4.9220 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321463634.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:50 Heat of formation + Delta-G solvation = -27.533449 kcal Electronic energy + Delta-G solvation = -26565.854353 eV Core-core repulsion = 22683.192020 eV Total energy + Delta-G solvation = -3882.662333 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.57939 -39.47671 -37.27482 -36.09875 -34.98828 -34.47146 -32.40414 -31.60777 -30.07260 -28.51758 -27.60377 -27.16697 -25.45840 -24.42486 -23.02240 -22.12080 -21.56825 -20.56311 -20.27490 -17.96221 -17.39921 -16.96156 -16.55001 -16.15787 -15.95227 -15.42002 -15.22732 -14.86078 -14.78245 -14.66997 -14.46451 -14.04920 -13.62248 -13.55897 -13.29341 -13.21982 -12.79973 -12.64651 -12.60782 -12.50374 -12.36963 -12.00694 -11.96356 -11.70773 -11.64984 -11.50078 -11.46943 -11.06864 -11.01976 -11.01253 -10.74341 -10.72103 -9.79844 -9.34556 -9.07345 -9.04120 -8.92867 -8.79851 -8.20990 -6.46875 -6.19104 -3.89307 1.16372 2.31880 2.42856 3.05460 3.14176 3.25295 3.29069 3.32856 3.58106 3.74204 3.95916 4.21437 4.23016 4.42133 4.56876 4.61751 4.71425 4.80670 4.93213 4.97403 5.01331 5.15761 5.17262 5.19707 5.22538 5.33099 5.35542 5.39038 5.40141 5.42094 5.54400 5.59635 5.69080 5.71438 5.80498 5.88795 5.92346 6.03813 6.05785 6.13803 6.17768 6.46658 6.68164 6.87671 7.49032 7.61753 7.71647 8.37573 8.65880 9.26066 10.88255 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009124 B = 0.002435 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3068.209503 B =11494.986725 C =13538.782474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.009 4.009 3 C -0.151 4.151 4 C -0.033 4.033 5 C -0.043 4.043 6 N -0.476 5.476 7 C 0.191 3.809 8 C 0.157 3.843 9 N -0.685 5.685 10 C 0.055 3.945 11 C 0.145 3.855 12 H 0.097 0.903 13 C -0.163 4.163 14 N -0.736 5.736 15 C 0.536 3.464 16 O -0.515 6.515 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 O -0.188 6.188 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.182 0.818 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.353 0.647 39 H 0.091 0.909 40 H 0.041 0.959 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.393 0.607 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.551 -9.772 -4.704 28.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 C -0.208 4.208 4 C -0.087 4.087 5 C -0.182 4.182 6 N -0.206 5.206 7 C -0.017 4.017 8 C 0.027 3.973 9 N -0.319 5.319 10 C -0.075 4.075 11 C 0.040 3.960 12 H 0.115 0.885 13 C -0.222 4.222 14 N -0.390 5.390 15 C 0.322 3.678 16 O -0.388 6.388 17 C -0.305 4.305 18 S 0.168 5.832 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.200 1.200 27 O -0.074 6.074 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.199 0.801 36 H 0.120 0.880 37 H 0.094 0.906 38 H 0.173 0.827 39 H 0.109 0.891 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.227 0.773 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -26.560 -7.513 -3.907 27.877 hybrid contribution 1.061 -2.846 -1.226 3.276 sum -25.499 -10.360 -5.133 27.998 Atomic orbital electron populations 1.21882 0.93486 1.02429 1.02831 1.19776 0.96476 0.96287 0.90209 1.21893 1.01976 0.94155 1.02826 1.23492 1.02713 0.98523 0.83959 1.23067 1.02332 0.97786 0.94989 1.70416 1.21185 1.26573 1.02383 1.25961 0.94066 0.86016 0.95617 1.20181 0.97261 0.98274 0.81583 1.60373 1.06538 1.56307 1.08680 1.22318 0.99534 0.99093 0.86525 1.20921 0.82556 0.99789 0.92776 0.88481 1.22163 1.02880 1.02201 0.94925 1.46066 1.13423 1.13919 1.65635 1.20252 0.84070 0.85897 0.77591 1.90698 1.82472 1.17052 1.48628 1.23538 0.97628 1.06277 1.03034 1.85379 1.05471 1.11106 1.81288 1.22831 0.99418 0.98894 1.47240 0.91019 1.24989 0.98158 0.95046 0.95385 1.70009 1.26392 1.09021 1.44898 0.86233 0.80452 0.79293 0.79579 1.19942 1.20817 1.19954 1.84373 1.58781 1.47981 1.16226 0.92265 0.91364 0.92031 0.87879 0.91903 0.91834 0.91382 0.80053 0.88026 0.90639 0.82671 0.89105 0.94085 0.91275 0.91735 0.92606 0.77336 0.89334 0.89308 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.18 37.16 0.34 -0.53 16 2 C -0.01 -0.06 3.33 -91.77 -0.31 -0.37 16 3 C -0.15 -1.11 9.18 37.16 0.34 -0.77 16 4 C -0.03 -0.33 5.89 -35.68 -0.21 -0.54 16 5 C -0.04 -0.46 11.79 -17.77 -0.21 -0.67 16 6 N -0.48 -5.86 11.29 -11.10 -0.13 -5.99 16 7 C 0.19 2.13 7.86 -12.95 -0.10 2.03 16 8 C 0.16 1.29 6.31 -4.98 -0.03 1.26 16 9 N -0.68 -6.59 6.48 -115.06 -0.75 -7.34 16 10 C 0.05 0.43 5.30 -3.83 -0.02 0.41 16 11 C 0.14 1.62 2.88 -67.93 -0.20 1.43 16 12 H 0.10 1.36 7.58 -51.93 -0.39 0.97 16 13 C -0.16 -1.67 9.48 37.16 0.35 -1.31 16 14 N -0.74 -9.61 4.36 -53.81 -0.23 -9.84 16 15 C 0.54 9.99 7.81 -10.99 -0.09 9.90 16 16 O -0.51 -11.68 15.52 5.56 0.09 -11.60 16 17 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 19 C -0.54 -15.45 9.50 30.94 0.29 -15.16 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.43 13.22 55.49 0.73 -25.70 16 23 Si 0.92 21.65 29.55 -169.99 -5.02 16.63 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 O -0.19 -2.17 10.77 5.37 0.06 -2.11 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 0.53 8.11 -51.93 -0.42 0.10 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.18 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.35 3.79 7.57 -39.29 -0.30 3.49 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.39 4.09 8.15 -40.82 -0.33 3.76 16 45 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 46 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 47 H 0.27 7.61 8.31 -40.82 -0.34 7.28 16 LS Contribution 410.96 15.07 6.19 6.19 Total: -1.00 -36.38 410.96 -8.73 -45.11 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -7.75 Total: 3.69 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 0.29 Total: -5.21 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.37 Total: -48.86 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.14 Total: -13.71 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.38 -8.73 -45.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321463634.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.574 kcal (2) G-P(sol) polarization free energy of solvation -36.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds