Wall clock time and date at job start Wed Apr 1 2020 00:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99540 * 2 1 3 5 5 C 1.34327 * 126.43838 * 119.71235 * 4 2 1 6 6 N 1.34479 * 107.66308 * 179.88106 * 5 4 2 7 7 C 1.30256 * 108.70581 * 0.39236 * 6 5 4 8 8 C 1.50693 * 125.62308 * 179.73930 * 7 6 5 9 9 N 1.46905 * 109.47411 * 90.02592 * 8 7 6 10 10 C 1.46898 * 111.00163 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46961 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47013 * 65.00253 * 11 10 9 13 13 C 1.53005 * 109.47005 * 184.99713 * 11 10 9 14 14 N 1.46496 * 109.47431 * 304.99812 * 11 10 9 15 15 C 1.34776 * 119.99925 * 155.00105 * 14 11 10 16 16 O 1.21282 * 120.00078 * 359.97438 * 15 14 11 17 17 C 1.50701 * 119.99816 * 180.02562 * 15 14 11 18 18 S 1.80995 * 109.47092 * 179.97438 * 17 15 14 19 19 C 1.76199 * 99.99970 * 179.97438 * 18 17 15 20 20 H 1.07992 * 120.00225 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00174 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99972 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47121 * 59.99789 * 23 21 19 25 25 H 1.48495 * 109.47121 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46805 * 300.00129 * 23 21 19 27 27 O 1.33971 * 108.75418 * 359.75563 * 7 6 5 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 32 32 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 35 35 H 1.08001 * 126.17106 * 0.02562 * 5 4 2 36 36 H 1.09002 * 109.47301 * 210.02019 * 8 7 6 37 37 H 1.08992 * 109.47055 * 330.02333 * 8 7 6 38 38 H 1.00901 * 110.99430 * 303.95476 * 9 8 7 39 39 H 1.08999 * 109.46725 * 299.99476 * 10 9 8 40 40 H 1.08995 * 109.47034 * 59.99882 * 10 9 8 41 41 H 1.08998 * 109.46762 * 180.02562 * 13 11 10 42 42 H 1.09002 * 109.46967 * 300.00089 * 13 11 10 43 43 H 1.09000 * 109.47076 * 59.99954 * 13 11 10 44 44 H 0.97002 * 119.99996 * 335.00144 * 14 11 10 45 45 H 1.09000 * 109.47285 * 299.99722 * 17 15 14 46 46 H 1.09000 * 109.47439 * 59.99630 * 17 15 14 47 47 H 0.96999 * 119.99732 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 2.8033 -1.8100 1.2582 6 7 3.0276 -2.1188 2.5477 7 6 2.4128 -1.2498 3.2984 8 6 2.4055 -1.2411 4.8053 9 7 3.5338 -0.4383 5.2959 10 6 3.5589 -0.4078 6.7643 11 6 4.7453 0.4351 7.2366 12 1 4.6004 1.4708 6.9290 13 6 4.8455 0.3654 8.7618 14 7 5.9799 -0.0828 6.6419 15 6 7.0426 0.7301 6.4802 16 8 6.9767 1.8906 6.8266 17 6 8.3124 0.1974 5.8679 18 16 9.5442 1.5211 5.7860 19 6 10.8860 0.6454 5.0528 20 1 10.7766 -0.3995 4.8029 21 6 12.0835 1.2987 4.7965 22 7 12.2170 2.5722 5.1015 23 14 13.5064 0.3702 4.0199 24 1 13.0913 -0.1520 2.6932 25 1 14.6627 1.2865 3.8522 26 1 13.8962 -0.7625 4.8977 27 8 1.7878 -0.3652 2.5099 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 3.1776 -2.3478 0.3996 36 1 1.4703 -0.8092 5.1616 37 1 2.4982 -2.2622 5.1749 38 1 4.4083 -0.7802 4.9266 39 1 2.6317 0.0297 7.1345 40 1 3.6599 -1.4232 7.1472 41 1 5.6903 0.9662 9.0982 42 1 3.9268 0.7508 9.2042 43 1 4.9902 -0.6703 9.0693 44 1 6.0324 -1.0108 6.3645 45 1 8.6962 -0.6190 6.4797 46 1 8.1053 -0.1685 4.8623 47 1 13.0538 3.0287 4.9220 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321463634.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:49 Heat of formation + Delta-G solvation = -56.071407 kcal Electronic energy + Delta-G solvation = -26567.091851 eV Core-core repulsion = 22683.192020 eV Total energy + Delta-G solvation = -3883.899832 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.36139 -40.81030 -38.22202 -36.73634 -35.83407 -35.42327 -34.59160 -32.81657 -30.88814 -29.95319 -28.12299 -27.87505 -27.66222 -25.17108 -23.75843 -22.84986 -22.61713 -21.52478 -21.26731 -19.88360 -18.36525 -17.85237 -17.75194 -17.28372 -16.88616 -16.69708 -16.44434 -16.17003 -15.98168 -15.67698 -15.46298 -15.16578 -14.71770 -14.58608 -14.30709 -14.14423 -14.05971 -13.90349 -13.29991 -13.19470 -13.15549 -13.12629 -13.05839 -12.87734 -12.76182 -12.61239 -12.58068 -12.35479 -12.22132 -12.01700 -11.94718 -11.73674 -11.50999 -11.13752 -10.90872 -10.28902 -10.12939 -9.79523 -9.51101 -8.67221 -8.35159 -6.13288 0.39572 1.26311 1.42940 1.45892 1.55963 1.58026 1.64344 1.68300 2.25654 2.30588 2.90408 2.98579 3.23304 3.32758 3.59512 3.78745 3.88151 3.99942 4.05194 4.08534 4.17988 4.21068 4.28640 4.36133 4.40909 4.45180 4.49118 4.66568 4.70444 4.70900 4.74168 4.79145 4.81734 4.87133 4.94752 5.09970 5.12830 5.26399 5.27639 5.30083 5.32471 5.40529 5.54934 5.81210 6.11424 6.18819 6.49929 6.69912 7.05743 7.27318 8.73851 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009124 B = 0.002435 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3068.209503 B =11494.986725 C =13538.782474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.009 4.009 3 C -0.150 4.150 4 C -0.036 4.036 5 C -0.063 4.063 6 N -0.502 5.502 7 C 0.180 3.820 8 C 0.160 3.840 9 N -0.703 5.703 10 C 0.066 3.934 11 C 0.143 3.857 12 H 0.065 0.935 13 C -0.157 4.157 14 N -0.709 5.709 15 C 0.537 3.463 16 O -0.563 6.563 17 C -0.130 4.130 18 S -0.150 6.150 19 C -0.548 4.548 20 H 0.081 0.919 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.263 1.263 25 H -0.278 1.278 26 H -0.261 1.261 27 O -0.203 6.203 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.125 0.875 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.201 0.799 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.344 0.656 39 H 0.113 0.887 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.410 0.590 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.915 -12.365 -5.340 30.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 C -0.207 4.207 4 C -0.090 4.090 5 C -0.201 4.201 6 N -0.232 5.232 7 C -0.027 4.027 8 C 0.031 3.969 9 N -0.337 5.337 10 C -0.063 4.063 11 C 0.038 3.962 12 H 0.083 0.917 13 C -0.215 4.215 14 N -0.363 5.363 15 C 0.323 3.677 16 O -0.441 6.441 17 C -0.282 4.282 18 S 0.077 5.923 19 C -0.696 4.696 20 H 0.099 0.901 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.187 1.187 25 H -0.203 1.203 26 H -0.186 1.186 27 O -0.090 6.090 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.143 0.857 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.218 0.782 36 H 0.139 0.861 37 H 0.112 0.888 38 H 0.163 0.837 39 H 0.131 0.869 40 H 0.087 0.913 41 H 0.051 0.949 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.247 0.753 45 H 0.127 0.873 46 H 0.122 0.878 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -27.978 -10.160 -4.536 30.109 hybrid contribution 1.345 -2.064 -1.018 2.666 sum -26.632 -12.223 -5.555 29.825 Atomic orbital electron populations 1.21854 0.92465 1.02684 1.03174 1.19977 0.97287 0.95808 0.89658 1.21881 1.01018 0.94663 1.03119 1.24084 1.02202 0.98448 0.84243 1.23492 1.02868 0.98506 0.95224 1.70397 1.22018 1.27481 1.03283 1.26600 0.93711 0.85671 0.96752 1.20357 0.97403 0.99291 0.79854 1.60357 1.06502 1.57150 1.09672 1.22289 0.98460 0.99929 0.85621 1.21088 0.82630 0.98925 0.93563 0.91658 1.22101 1.02684 1.02904 0.93847 1.45819 1.12536 1.14063 1.63910 1.19967 0.84698 0.85618 0.77412 1.90687 1.83282 1.19146 1.50996 1.23378 0.96415 1.03733 1.04640 1.85551 1.08680 1.16299 1.81723 1.23167 0.99815 0.99281 1.47290 0.90063 1.26139 1.01353 0.95978 0.95707 1.70178 1.27330 1.11014 1.46206 0.85009 0.76227 0.77936 0.78860 1.18736 1.20267 1.18600 1.84378 1.59139 1.48419 1.17031 0.92040 0.89437 0.93252 0.85681 0.93448 0.93264 0.89240 0.78173 0.86136 0.88793 0.83721 0.86922 0.91315 0.94862 0.89217 0.90595 0.75301 0.87321 0.87777 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.18 71.98 0.66 -0.80 16 2 C -0.01 -0.11 3.33 -11.54 -0.04 -0.15 16 3 C -0.15 -2.10 9.18 71.98 0.66 -1.44 16 4 C -0.04 -0.70 5.89 24.79 0.15 -0.56 16 5 C -0.06 -1.30 11.79 83.39 0.98 -0.32 16 6 N -0.50 -12.02 11.29 -303.83 -3.43 -15.45 16 7 C 0.18 3.86 7.86 88.34 0.69 4.55 16 8 C 0.16 2.28 6.31 85.55 0.54 2.82 16 9 N -0.70 -12.18 6.48 -517.95 -3.36 -15.53 16 10 C 0.07 0.84 5.30 86.30 0.46 1.30 16 11 C 0.14 3.00 2.88 44.99 0.13 3.13 16 12 H 0.07 1.84 7.58 -2.39 -0.02 1.83 16 13 C -0.16 -2.94 9.48 71.98 0.68 -2.25 16 14 N -0.71 -17.67 4.36 -442.53 -1.93 -19.60 16 15 C 0.54 20.18 7.81 87.66 0.68 20.87 16 16 O -0.56 -26.60 15.52 -3.03 -0.05 -26.65 16 17 C -0.13 -5.32 6.16 71.24 0.44 -4.88 16 18 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 19 C -0.55 -31.90 9.50 67.96 0.65 -31.26 16 20 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.75 5.49 84.86 0.47 1.22 16 22 N -0.91 -56.78 13.22 21.65 0.29 -56.49 16 23 Si 1.00 44.26 29.55 68.60 2.03 46.28 16 24 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 27 O -0.20 -4.64 10.77 -3.69 -0.04 -4.68 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.13 1.02 8.11 -2.39 -0.02 1.00 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.20 3.01 8.06 -2.91 -0.02 2.98 16 36 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.34 6.85 7.57 -89.69 -0.68 6.17 16 39 H 0.11 1.03 8.14 -2.39 -0.02 1.02 16 40 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.41 7.56 8.15 -92.71 -0.76 6.81 16 45 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 46 H 0.10 3.92 8.14 -2.40 -0.02 3.90 16 47 H 0.27 15.71 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -83.48 410.96 -0.96 -84.45 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -0.46 Total: 25.11 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: 7.15 Total: -7.77 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -8.43 Total: -107.08 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.09 Total: -31.32 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -83.48 -0.96 -84.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321463634.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.374 kcal (2) G-P(sol) polarization free energy of solvation -83.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds