Wall clock time and date at job start Wed Apr 1 2020 00:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46875 * 2 1 4 4 O 1.42897 * 109.46881 * 119.99603 * 2 1 3 5 5 C 1.50699 * 109.47057 * 239.99640 * 2 1 3 6 6 N 1.29428 * 124.80626 * 285.02259 * 5 2 1 7 7 C 1.30940 * 117.36216 * 179.73719 * 6 5 2 8 8 C 1.35657 * 114.19430 * 359.97438 * 7 6 5 9 9 C 1.46687 * 126.13171 * 179.97438 * 8 7 6 10 10 O 1.21687 * 119.99733 * 352.90506 * 9 8 7 11 11 N 1.34779 * 120.00211 * 172.90334 * 9 8 7 12 12 C 1.46498 * 119.99529 * 1.68669 * 11 9 8 13 13 C 1.50698 * 109.47050 * 78.88707 * 12 11 9 14 14 H 1.07994 * 120.00172 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99696 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99985 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00186 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47255 * 89.99923 * 17 15 13 19 19 H 1.48502 * 109.47362 * 210.00282 * 17 15 13 20 20 H 1.48502 * 109.47096 * 330.00169 * 17 15 13 21 21 C 1.46495 * 119.99757 * 181.68563 * 11 9 8 22 22 C 1.53003 * 109.47087 * 90.00411 * 21 11 9 23 23 C 1.52997 * 109.47300 * 179.97438 * 22 21 11 24 24 N 1.46896 * 109.47306 * 179.97438 * 23 22 21 25 25 C 1.46900 * 110.99980 * 170.00313 * 24 23 22 26 26 C 1.46902 * 111.00015 * 293.95794 * 24 23 22 27 27 S 1.70959 * 124.80243 * 104.72487 * 5 2 1 28 28 H 1.09001 * 109.47157 * 300.00508 * 1 2 3 29 29 H 1.08997 * 109.46889 * 60.00369 * 1 2 3 30 30 H 1.08999 * 109.46875 * 180.02562 * 1 2 3 31 31 H 0.96694 * 114.00369 * 299.99765 * 4 2 1 32 32 H 1.08003 * 122.89857 * 179.97438 * 7 6 5 33 33 H 1.09003 * 109.46519 * 198.88053 * 12 11 9 34 34 H 1.08996 * 109.47678 * 318.88262 * 12 11 9 35 35 H 0.97001 * 120.00283 * 179.97438 * 16 15 13 36 36 H 1.09006 * 109.46739 * 209.99670 * 21 11 9 37 37 H 1.08994 * 109.47491 * 330.00022 * 21 11 9 38 38 H 1.08996 * 109.46814 * 299.99395 * 22 21 11 39 39 H 1.08994 * 109.47273 * 59.99477 * 22 21 11 40 40 H 1.09000 * 109.47376 * 300.00416 * 23 22 21 41 41 H 1.09011 * 109.46889 * 59.99731 * 23 22 21 42 42 H 1.08991 * 109.47404 * 59.99990 * 25 24 23 43 43 H 1.08996 * 109.47018 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.47220 * 299.99867 * 25 24 23 45 45 H 1.08997 * 109.47368 * 59.99877 * 26 24 23 46 46 H 1.09009 * 109.46787 * 180.02562 * 26 24 23 47 47 H 1.08998 * 109.46701 * 299.99575 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0324 -0.7105 -1.2304 6 7 2.0189 -1.9936 -1.3999 7 6 2.4883 -2.4561 -2.5313 8 6 2.9311 -1.4975 -3.3829 9 6 3.5057 -1.7213 -4.7139 10 8 3.7393 -2.8537 -5.0931 11 7 3.7750 -0.6727 -5.5167 12 6 3.5283 0.6924 -5.0459 13 6 4.6500 1.1199 -4.1348 14 1 5.4648 0.4424 -3.9268 15 6 4.6358 2.3762 -3.5666 16 7 5.6144 2.7491 -2.7710 17 14 3.2268 3.5484 -3.9269 18 1 2.1512 3.3534 -2.9217 19 1 3.7182 4.9482 -3.8609 20 1 2.6907 3.2756 -5.2847 21 6 4.3144 -0.8983 -6.8599 22 6 3.1612 -1.0368 -7.8559 23 6 3.7245 -1.2717 -9.2589 24 7 2.6173 -1.4053 -10.2151 25 6 3.1121 -1.3947 -11.5982 26 6 1.8327 -2.6178 -9.9459 27 16 2.6940 0.0647 -2.6030 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.7210 -0.2700 1.9979 32 1 2.5201 -3.5098 -2.7662 33 1 3.4769 1.3675 -5.9002 34 1 2.5851 0.7239 -4.5006 35 1 5.6046 3.6331 -2.3716 36 1 4.9420 -0.0541 -7.1459 37 1 4.9096 -1.8113 -6.8639 38 1 2.5337 -1.8809 -7.5700 39 1 2.5660 -0.1238 -7.8519 40 1 4.3519 -0.4275 -9.5446 41 1 4.3200 -2.1848 -9.2632 42 1 3.8018 -2.2260 -11.7438 43 1 2.2719 -1.4946 -12.2853 44 1 3.6295 -0.4551 -11.7918 45 1 1.4202 -2.5673 -8.9383 46 1 1.0199 -2.6924 -10.6685 47 1 2.4762 -3.4933 -10.0317 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361680388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:23 Heat of formation + Delta-G solvation = -30.466044 kcal Electronic energy + Delta-G solvation = -28228.450027 eV Core-core repulsion = 24345.660528 eV Total energy + Delta-G solvation = -3882.789500 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.56292 -38.78466 -37.65418 -36.81282 -35.43130 -33.28307 -32.03499 -31.35084 -29.11947 -28.39579 -27.67927 -26.38865 -25.21643 -23.12839 -22.93061 -22.12707 -20.84908 -20.10973 -18.17108 -17.84636 -17.38978 -16.84867 -16.07908 -15.86057 -15.45448 -15.32621 -15.09549 -14.64434 -14.48454 -14.24996 -14.09224 -13.91127 -13.74969 -13.18719 -13.08852 -12.75324 -12.52882 -12.48631 -12.29245 -12.27854 -12.03083 -11.88344 -11.68375 -11.55016 -11.47337 -11.15748 -11.05526 -10.94205 -10.52708 -10.49642 -10.34535 -10.01863 -9.95966 -9.41806 -9.25778 -8.67125 -8.52641 -8.44605 -8.22329 -7.85421 -6.55280 -4.50391 0.97332 2.05518 2.51221 2.94906 3.05093 3.07831 3.14504 3.56915 3.85299 3.96649 4.00470 4.51141 4.69900 4.76709 4.96018 5.05637 5.06415 5.15435 5.22597 5.27579 5.29247 5.47216 5.53417 5.54249 5.54857 5.67405 5.71170 5.76391 5.79101 5.88153 5.91814 6.00917 6.04893 6.06917 6.19779 6.30371 6.31853 6.47814 6.80007 6.93482 6.95616 7.01014 7.11772 7.76911 7.84343 8.06535 8.44888 8.51181 8.73674 8.97578 10.54526 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011367 B = 0.003862 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.576553 B = 7248.405287 C = 8689.868710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.185 3.815 3 H 0.070 0.930 4 O -0.549 6.549 5 C -0.063 4.063 6 N -0.474 5.474 7 C 0.094 3.906 8 C -0.312 4.312 9 C 0.601 3.399 10 O -0.557 6.557 11 N -0.589 5.589 12 C 0.196 3.804 13 C -0.529 4.529 14 H 0.089 0.911 15 C 0.090 3.910 16 N -0.861 5.861 17 Si 0.846 3.154 18 H -0.261 1.261 19 H -0.273 1.273 20 H -0.255 1.255 21 C 0.124 3.876 22 C -0.132 4.132 23 C 0.058 3.942 24 N -0.549 5.549 25 C 0.025 3.975 26 C 0.021 3.979 27 S 0.352 5.648 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.373 0.627 32 H 0.172 0.828 33 H 0.054 0.946 34 H 0.029 0.971 35 H 0.274 0.726 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.036 0.964 42 H 0.023 0.977 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.452 -1.243 -5.881 10.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.123 3.877 3 H 0.088 0.912 4 O -0.354 6.354 5 C -0.332 4.332 6 N -0.190 5.190 7 C -0.069 4.069 8 C -0.438 4.438 9 C 0.390 3.610 10 O -0.438 6.438 11 N -0.319 5.319 12 C 0.072 3.928 13 C -0.574 4.574 14 H 0.107 0.893 15 C -0.119 4.119 16 N -0.496 5.496 17 Si 0.670 3.330 18 H -0.185 1.185 19 H -0.198 1.198 20 H -0.179 1.179 21 C 0.000 4.000 22 C -0.171 4.171 23 C -0.070 4.070 24 N -0.273 5.273 25 C -0.124 4.124 26 C -0.127 4.127 27 S 0.621 5.379 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.220 0.780 32 H 0.189 0.811 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.054 0.946 42 H 0.042 0.958 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -8.384 -0.856 -6.056 10.378 hybrid contribution -0.153 -0.474 0.085 0.505 sum -8.537 -1.330 -5.971 10.503 Atomic orbital electron populations 1.22456 0.95134 1.03517 1.02389 1.20022 0.92703 0.93033 0.81943 0.91177 1.86699 1.76657 1.57068 1.14989 1.28224 1.03542 0.95897 1.05556 1.66123 1.18336 1.13181 1.21334 1.21844 0.97032 1.00519 0.87479 1.25764 1.17459 0.98192 1.02370 1.16770 0.77353 0.84363 0.82555 1.90719 1.55312 1.22514 1.75283 1.47671 1.62940 1.07056 1.14240 1.20089 0.96412 0.79743 0.96554 1.21494 1.07573 1.01179 1.27172 0.89262 1.24871 0.95723 0.97265 0.94033 1.69864 1.30818 1.20476 1.28408 0.87224 0.83183 0.81815 0.80733 1.18548 1.19783 1.17906 1.21285 0.95200 1.02738 0.80746 1.21985 0.99118 1.02960 0.93013 1.22073 0.92128 1.00728 0.92080 1.61974 1.23836 1.38421 1.03022 1.22368 0.99536 1.00910 0.89538 1.22436 0.97563 0.90057 1.02627 1.86125 1.44171 1.03950 1.03625 0.91816 0.91482 0.91059 0.78028 0.81111 0.92846 0.95381 0.91561 0.90038 0.90336 0.91562 0.90963 0.90529 0.94582 0.95795 0.91586 0.91349 0.90857 0.91717 0.95648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 9.52 37.16 0.35 -1.86 16 2 C 0.18 2.92 4.08 -27.88 -0.11 2.80 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 O -0.55 -8.68 13.29 -35.23 -0.47 -9.15 16 5 C -0.06 -1.22 6.28 -13.29 -0.08 -1.31 16 6 N -0.47 -9.83 10.49 -11.50 -0.12 -9.95 16 7 C 0.09 1.93 11.10 -18.85 -0.21 1.72 16 8 C -0.31 -6.61 6.20 -37.10 -0.23 -6.84 16 9 C 0.60 12.97 7.53 -12.85 -0.10 12.87 16 10 O -0.56 -12.74 16.44 5.20 0.09 -12.65 16 11 N -0.59 -11.74 2.50 -176.61 -0.44 -12.18 16 12 C 0.20 4.02 3.85 -5.20 -0.02 4.00 16 13 C -0.53 -12.61 7.16 -34.44 -0.25 -12.86 16 14 H 0.09 2.45 8.06 -52.49 -0.42 2.03 16 15 C 0.09 2.16 4.95 -17.82 -0.09 2.07 16 16 N -0.86 -22.45 13.96 55.43 0.77 -21.67 16 17 Si 0.85 17.27 26.84 -169.99 -4.56 12.71 16 18 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.26 -4.93 6.54 56.52 0.37 -4.56 16 21 C 0.12 2.07 5.37 -4.04 -0.02 2.05 16 22 C -0.13 -1.91 5.46 -26.73 -0.15 -2.06 16 23 C 0.06 0.72 4.96 -3.83 -0.02 0.70 16 24 N -0.55 -6.55 5.02 -251.26 -1.26 -7.81 16 25 C 0.02 0.24 9.57 60.06 0.57 0.81 16 26 C 0.02 0.24 9.32 60.07 0.56 0.80 16 27 S 0.35 7.15 15.15 -107.50 -1.63 5.52 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.37 3.69 9.08 45.56 0.41 4.10 16 32 H 0.17 3.22 8.06 -52.48 -0.42 2.80 16 33 H 0.05 1.05 7.05 -51.93 -0.37 0.68 16 34 H 0.03 0.59 4.30 -25.11 -0.11 0.48 16 35 H 0.27 6.65 8.31 -40.82 -0.34 6.32 16 36 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 37 H 0.08 1.35 7.40 -51.93 -0.38 0.97 16 38 H 0.07 1.04 6.55 -51.93 -0.34 0.70 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.08 0.88 8.06 -51.93 -0.42 0.46 16 41 H 0.04 0.45 8.12 -51.92 -0.42 0.02 16 42 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 43 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 44 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 45 H 0.07 0.88 6.47 -51.93 -0.34 0.54 16 46 H 0.06 0.62 8.12 -51.92 -0.42 0.20 16 47 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 390.67 15.07 5.89 5.89 Total: -1.00 -30.12 390.67 -8.14 -38.26 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -6.62 Total: 8.13 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 0.21 Total: 2.90 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -1.05 Total: -51.61 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.38 Total: -21.80 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -4.56 Total: 12.71 kcal Atomic # 16 Polarization: 7.15 SS G_CDS: -1.63 Total: 5.52 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.12 -8.14 -38.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361680388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.795 kcal (2) G-P(sol) polarization free energy of solvation -30.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds