Wall clock time and date at job start Wed Apr 1 2020 00:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46875 * 2 1 4 4 O 1.42897 * 109.46881 * 119.99603 * 2 1 3 5 5 C 1.50699 * 109.47057 * 239.99640 * 2 1 3 6 6 N 1.29428 * 124.80626 * 285.02259 * 5 2 1 7 7 C 1.30940 * 117.36216 * 179.73719 * 6 5 2 8 8 C 1.35657 * 114.19430 * 359.97438 * 7 6 5 9 9 C 1.46687 * 126.13171 * 179.97438 * 8 7 6 10 10 O 1.21687 * 119.99733 * 352.90506 * 9 8 7 11 11 N 1.34779 * 120.00211 * 172.90334 * 9 8 7 12 12 C 1.46498 * 119.99529 * 1.68669 * 11 9 8 13 13 C 1.50698 * 109.47050 * 78.88707 * 12 11 9 14 14 H 1.07994 * 120.00172 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99696 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99985 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00186 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47255 * 89.99923 * 17 15 13 19 19 H 1.48502 * 109.47362 * 210.00282 * 17 15 13 20 20 H 1.48502 * 109.47096 * 330.00169 * 17 15 13 21 21 C 1.46495 * 119.99757 * 181.68563 * 11 9 8 22 22 C 1.53003 * 109.47087 * 90.00411 * 21 11 9 23 23 C 1.52997 * 109.47300 * 179.97438 * 22 21 11 24 24 N 1.46896 * 109.47306 * 179.97438 * 23 22 21 25 25 C 1.46900 * 110.99980 * 170.00313 * 24 23 22 26 26 C 1.46902 * 111.00015 * 293.95794 * 24 23 22 27 27 S 1.70959 * 124.80243 * 104.72487 * 5 2 1 28 28 H 1.09001 * 109.47157 * 300.00508 * 1 2 3 29 29 H 1.08997 * 109.46889 * 60.00369 * 1 2 3 30 30 H 1.08999 * 109.46875 * 180.02562 * 1 2 3 31 31 H 0.96694 * 114.00369 * 299.99765 * 4 2 1 32 32 H 1.08003 * 122.89857 * 179.97438 * 7 6 5 33 33 H 1.09003 * 109.46519 * 198.88053 * 12 11 9 34 34 H 1.08996 * 109.47678 * 318.88262 * 12 11 9 35 35 H 0.97001 * 120.00283 * 179.97438 * 16 15 13 36 36 H 1.09006 * 109.46739 * 209.99670 * 21 11 9 37 37 H 1.08994 * 109.47491 * 330.00022 * 21 11 9 38 38 H 1.08996 * 109.46814 * 299.99395 * 22 21 11 39 39 H 1.08994 * 109.47273 * 59.99477 * 22 21 11 40 40 H 1.09000 * 109.47376 * 300.00416 * 23 22 21 41 41 H 1.09011 * 109.46889 * 59.99731 * 23 22 21 42 42 H 1.08991 * 109.47404 * 59.99990 * 25 24 23 43 43 H 1.08996 * 109.47018 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.47220 * 299.99867 * 25 24 23 45 45 H 1.08997 * 109.47368 * 59.99877 * 26 24 23 46 46 H 1.09009 * 109.46787 * 180.02562 * 26 24 23 47 47 H 1.08998 * 109.46701 * 299.99575 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0324 -0.7105 -1.2304 6 7 2.0189 -1.9936 -1.3999 7 6 2.4883 -2.4561 -2.5313 8 6 2.9311 -1.4975 -3.3829 9 6 3.5057 -1.7213 -4.7139 10 8 3.7393 -2.8537 -5.0931 11 7 3.7750 -0.6727 -5.5167 12 6 3.5283 0.6924 -5.0459 13 6 4.6500 1.1199 -4.1348 14 1 5.4648 0.4424 -3.9268 15 6 4.6358 2.3762 -3.5666 16 7 5.6144 2.7491 -2.7710 17 14 3.2268 3.5484 -3.9269 18 1 2.1512 3.3534 -2.9217 19 1 3.7182 4.9482 -3.8609 20 1 2.6907 3.2756 -5.2847 21 6 4.3144 -0.8983 -6.8599 22 6 3.1612 -1.0368 -7.8559 23 6 3.7245 -1.2717 -9.2589 24 7 2.6173 -1.4053 -10.2151 25 6 3.1121 -1.3947 -11.5982 26 6 1.8327 -2.6178 -9.9459 27 16 2.6940 0.0647 -2.6030 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.7210 -0.2700 1.9979 32 1 2.5201 -3.5098 -2.7662 33 1 3.4769 1.3675 -5.9002 34 1 2.5851 0.7239 -4.5006 35 1 5.6046 3.6331 -2.3716 36 1 4.9420 -0.0541 -7.1459 37 1 4.9096 -1.8113 -6.8639 38 1 2.5337 -1.8809 -7.5700 39 1 2.5660 -0.1238 -7.8519 40 1 4.3519 -0.4275 -9.5446 41 1 4.3200 -2.1848 -9.2632 42 1 3.8018 -2.2260 -11.7438 43 1 2.2719 -1.4946 -12.2853 44 1 3.6295 -0.4551 -11.7918 45 1 1.4202 -2.5673 -8.9383 46 1 1.0199 -2.6924 -10.6685 47 1 2.4762 -3.4933 -10.0317 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361680388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:22 Heat of formation + Delta-G solvation = -53.769702 kcal Electronic energy + Delta-G solvation = -28229.460550 eV Core-core repulsion = 24345.660528 eV Total energy + Delta-G solvation = -3883.800022 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.18660 -40.32510 -38.65336 -38.06364 -37.06306 -34.94330 -33.47924 -32.60152 -30.52566 -30.08149 -28.50096 -27.68370 -26.54339 -24.77252 -24.26258 -23.44841 -21.94645 -21.57083 -19.71233 -19.40656 -19.18336 -18.21307 -17.56178 -17.28002 -16.58206 -16.55452 -16.44378 -16.05817 -15.74133 -15.57115 -15.46941 -15.27908 -14.94470 -14.80617 -14.61267 -14.42980 -13.93219 -13.64026 -13.49579 -13.31623 -13.04041 -13.01691 -12.98087 -12.66479 -12.54689 -12.45792 -12.31652 -12.26493 -12.12560 -12.05955 -11.78963 -11.55427 -11.22445 -11.08138 -11.00216 -10.29604 -10.17036 -9.85315 -9.46288 -9.33897 -8.38528 -6.40437 -0.62845 0.44938 0.90463 1.37092 1.42553 1.48967 1.52010 2.04962 2.23914 2.27717 2.96219 3.02676 3.15537 3.52137 3.63051 3.89300 3.95756 4.09516 4.10699 4.19328 4.26287 4.35136 4.36573 4.43868 4.47792 4.50490 4.59898 4.61622 4.68332 4.77118 4.79943 4.80416 4.82393 4.98401 5.01934 5.10671 5.15869 5.21427 5.25224 5.27784 5.55405 6.03026 6.05082 6.10296 6.35834 6.56750 6.78134 6.93983 7.04396 7.15434 8.75571 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011367 B = 0.003862 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.576553 B = 7248.405287 C = 8689.868710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.177 3.823 3 H 0.085 0.915 4 O -0.572 6.572 5 C -0.052 4.052 6 N -0.490 5.490 7 C 0.095 3.905 8 C -0.333 4.333 9 C 0.595 3.405 10 O -0.578 6.578 11 N -0.589 5.589 12 C 0.201 3.799 13 C -0.533 4.533 14 H 0.038 0.962 15 C 0.053 3.947 16 N -0.913 5.913 17 Si 0.891 3.109 18 H -0.238 1.238 19 H -0.275 1.275 20 H -0.233 1.233 21 C 0.120 3.880 22 C -0.117 4.117 23 C 0.064 3.936 24 N -0.562 5.562 25 C 0.024 3.976 26 C 0.022 3.978 27 S 0.342 5.658 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.399 0.601 32 H 0.182 0.818 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.276 0.724 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.034 0.966 42 H 0.027 0.973 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.081 0.919 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.724 -0.112 -6.391 12.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.116 3.884 3 H 0.102 0.898 4 O -0.381 6.381 5 C -0.322 4.322 6 N -0.206 5.206 7 C -0.068 4.068 8 C -0.458 4.458 9 C 0.383 3.617 10 O -0.462 6.462 11 N -0.318 5.318 12 C 0.078 3.922 13 C -0.577 4.577 14 H 0.057 0.943 15 C -0.152 4.152 16 N -0.549 5.549 17 Si 0.711 3.289 18 H -0.161 1.161 19 H -0.200 1.200 20 H -0.156 1.156 21 C -0.003 4.003 22 C -0.156 4.156 23 C -0.065 4.065 24 N -0.286 5.286 25 C -0.123 4.123 26 C -0.126 4.126 27 S 0.609 5.391 28 H 0.119 0.881 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.250 0.750 32 H 0.199 0.801 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.099 0.901 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -10.652 0.284 -6.599 12.533 hybrid contribution 0.568 -0.939 0.355 1.153 sum -10.083 -0.655 -6.244 11.878 Atomic orbital electron populations 1.22412 0.92338 1.03320 1.04585 1.20265 0.94743 0.92798 0.80640 0.89763 1.86618 1.77276 1.57929 1.16281 1.28840 1.01641 0.95411 1.06284 1.66207 1.19261 1.13823 1.21298 1.22096 0.96239 1.01079 0.87361 1.25825 1.18418 0.98887 1.02690 1.16928 0.77394 0.84462 0.82886 1.90690 1.56497 1.23215 1.75794 1.47778 1.62334 1.06530 1.15155 1.20013 0.95538 0.80126 0.96572 1.21342 1.07202 1.00688 1.28428 0.94343 1.25516 0.97871 0.98536 0.93280 1.69994 1.33366 1.21211 1.30326 0.86496 0.80785 0.79246 0.82376 1.16121 1.20014 1.15607 1.21478 0.96181 1.02722 0.79873 1.21804 0.97813 1.02255 0.93686 1.21987 0.92359 1.01147 0.90994 1.61974 1.23731 1.38818 1.04049 1.22431 1.00215 1.01448 0.88243 1.22436 0.97966 0.89850 1.02368 1.85902 1.44896 1.03861 1.04402 0.88084 0.90888 0.92408 0.74999 0.80117 0.91080 0.94353 0.91438 0.88941 0.91289 0.93019 0.90973 0.89330 0.94802 0.95459 0.90302 0.90646 0.92228 0.90055 0.95710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.68 9.52 71.98 0.69 -3.00 16 2 C 0.18 5.18 4.08 29.85 0.12 5.30 16 3 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 4 O -0.57 -16.82 13.29 -148.98 -1.98 -18.79 16 5 C -0.05 -1.96 6.28 88.46 0.56 -1.40 16 6 N -0.49 -20.05 10.49 -190.30 -2.00 -22.04 16 7 C 0.09 3.91 11.10 84.23 0.93 4.84 16 8 C -0.33 -14.26 6.20 23.88 0.15 -14.12 16 9 C 0.59 26.19 7.53 86.45 0.65 26.85 16 10 O -0.58 -27.15 16.44 -4.31 -0.07 -27.22 16 11 N -0.59 -23.69 2.50 -830.88 -2.08 -25.77 16 12 C 0.20 8.18 3.85 85.63 0.33 8.51 16 13 C -0.53 -25.89 7.16 25.60 0.18 -25.71 16 14 H 0.04 2.22 8.06 -2.91 -0.02 2.20 16 15 C 0.05 2.53 4.95 84.66 0.42 2.95 16 16 N -0.91 -48.66 13.96 21.45 0.30 -48.36 16 17 Si 0.89 33.93 26.84 68.60 1.84 35.77 16 18 H -0.24 -8.16 7.11 99.48 0.71 -7.45 16 19 H -0.28 -10.57 7.11 99.48 0.71 -9.87 16 20 H -0.23 -8.03 6.54 99.48 0.65 -7.38 16 21 C 0.12 4.02 5.37 86.38 0.46 4.48 16 22 C -0.12 -3.31 5.46 30.59 0.17 -3.15 16 23 C 0.06 1.50 4.96 86.30 0.43 1.93 16 24 N -0.56 -12.46 5.02 -948.85 -4.76 -17.23 16 25 C 0.02 0.41 9.57 127.69 1.22 1.63 16 26 C 0.02 0.46 9.32 127.69 1.19 1.65 16 27 S 0.34 13.71 15.15 -56.49 -0.86 12.85 16 28 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.40 6.74 9.08 -74.06 -0.67 6.06 16 32 H 0.18 6.89 8.06 -2.91 -0.02 6.87 16 33 H 0.07 2.66 7.05 -2.39 -0.02 2.64 16 34 H 0.04 1.54 4.30 -19.44 -0.08 1.45 16 35 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 36 H 0.09 2.86 8.07 -2.38 -0.02 2.84 16 37 H 0.07 2.44 7.40 -2.39 -0.02 2.42 16 38 H 0.05 1.62 6.55 -2.39 -0.02 1.61 16 39 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.09 1.87 8.06 -2.39 -0.02 1.85 16 41 H 0.03 0.81 8.12 -2.38 -0.02 0.79 16 42 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.08 1.13 8.12 -2.39 -0.02 1.11 16 44 H 0.07 1.16 8.12 -2.39 -0.02 1.14 16 45 H 0.06 1.40 6.47 -2.39 -0.02 1.39 16 46 H 0.08 1.41 8.12 -2.38 -0.02 1.39 16 47 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -66.59 390.67 -1.93 -68.51 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: 0.17 Total: 31.51 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 7.50 Total: 10.77 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -8.54 Total: -113.40 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -2.05 Total: -46.02 kcal Atomic # 14 Polarization: 33.93 SS G_CDS: 1.84 Total: 35.77 kcal Atomic # 16 Polarization: 13.71 SS G_CDS: -0.86 Total: 12.85 kcal Total: -66.59 -1.93 -68.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361680388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.745 kcal (2) G-P(sol) polarization free energy of solvation -66.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds