Wall clock time and date at job start Wed Apr 1 2020 00:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47152 * 2 1 4 4 O 1.42908 * 109.46980 * 239.99654 * 2 1 3 5 5 C 1.50704 * 109.47426 * 120.00265 * 2 1 3 6 6 N 1.29428 * 124.80424 * 74.96844 * 5 2 1 7 7 C 1.30944 * 117.36409 * 179.73574 * 6 5 2 8 8 C 1.35657 * 114.18944 * 0.52731 * 7 6 5 9 9 C 1.46685 * 126.13299 * 179.78652 * 8 7 6 10 10 O 1.21691 * 119.99742 * 8.19973 * 9 8 7 11 11 N 1.34776 * 120.00349 * 188.19337 * 9 8 7 12 12 C 1.46504 * 119.99897 * 5.53079 * 11 9 8 13 13 C 1.50697 * 109.47243 * 268.19371 * 12 11 9 14 14 H 1.08001 * 120.00232 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00235 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00507 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99909 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.46896 * 90.00083 * 17 15 13 19 19 H 1.48495 * 109.47166 * 210.00561 * 17 15 13 20 20 H 1.48503 * 109.47013 * 330.00228 * 17 15 13 21 21 C 1.46495 * 119.99915 * 185.53216 * 11 9 8 22 22 C 1.53003 * 109.46930 * 269.99662 * 21 11 9 23 23 C 1.52996 * 109.47065 * 180.02562 * 22 21 11 24 24 N 1.46898 * 109.47225 * 180.02562 * 23 22 21 25 25 C 1.46897 * 111.00247 * 66.04637 * 24 23 22 26 26 C 1.46906 * 111.00162 * 190.00312 * 24 23 22 27 27 S 1.70952 * 124.80179 * 255.00280 * 5 2 1 28 28 H 1.08999 * 109.46711 * 59.99863 * 1 2 3 29 29 H 1.08995 * 109.47152 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46757 * 300.00146 * 1 2 3 31 31 H 0.96700 * 113.99426 * 60.00561 * 4 2 1 32 32 H 1.07998 * 122.90741 * 180.35230 * 7 6 5 33 33 H 1.09002 * 109.46734 * 28.18767 * 12 11 9 34 34 H 1.09001 * 109.47228 * 148.19077 * 12 11 9 35 35 H 0.97001 * 120.00208 * 179.97438 * 16 15 13 36 36 H 1.08991 * 109.47287 * 30.00167 * 21 11 9 37 37 H 1.09001 * 109.46978 * 150.00388 * 21 11 9 38 38 H 1.09001 * 109.47469 * 300.00444 * 22 21 11 39 39 H 1.09001 * 109.46698 * 60.00554 * 22 21 11 40 40 H 1.09001 * 109.47227 * 300.00455 * 23 22 21 41 41 H 1.08999 * 109.47371 * 60.00221 * 23 22 21 42 42 H 1.09000 * 109.47227 * 60.00437 * 25 24 23 43 43 H 1.09003 * 109.47060 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.47057 * 299.99878 * 25 24 23 45 45 H 1.08997 * 109.46864 * 59.99702 * 26 24 23 46 46 H 1.08998 * 109.47176 * 179.97438 * 26 24 23 47 47 H 1.09004 * 109.47051 * 299.99325 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1668 5 6 2.0325 -0.7105 1.2304 6 7 2.0189 -1.9935 1.3999 7 6 2.4981 -2.4568 2.5270 8 6 2.9402 -1.4982 3.3790 9 6 3.5199 -1.7223 4.7076 10 8 3.7774 -2.8530 5.0762 11 7 3.7674 -0.6758 5.5202 12 6 3.3472 0.6717 5.1278 13 6 4.4703 1.3530 4.3892 14 1 5.4039 0.8343 4.2285 15 6 4.3064 2.6388 3.9195 16 7 5.2867 3.2336 3.2753 17 14 2.6919 3.5363 4.1980 18 1 2.7536 4.2787 5.4825 19 1 2.4580 4.4911 3.0850 20 1 1.5808 2.5523 4.2478 21 6 4.4566 -0.8859 6.7957 22 6 3.4265 -1.1651 7.8920 23 6 4.1463 -1.3838 9.2243 24 7 3.1574 -1.6524 10.2768 25 6 2.4680 -2.9276 10.0385 26 6 3.7840 -1.6329 11.6053 27 16 2.7002 0.0643 2.6002 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7210 -0.2702 -1.9979 32 1 2.5354 -3.5108 2.7595 33 1 2.4736 0.6054 4.4793 34 1 3.0959 1.2477 6.0184 35 1 5.1713 4.1382 2.9446 36 1 5.1329 -1.7361 6.7075 37 1 5.0269 0.0070 7.0518 38 1 2.7502 -0.3148 7.9802 39 1 2.8563 -2.0580 7.6358 40 1 4.8229 -2.2339 9.1364 41 1 4.7163 -0.4907 9.4802 42 1 3.1967 -3.7382 10.0286 43 1 1.7413 -3.1015 10.8320 44 1 1.9543 -2.8889 9.0779 45 1 4.2269 -0.6531 11.7837 46 1 3.0296 -1.8342 12.3659 47 1 4.5603 -2.3967 11.6522 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361680395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:26 Heat of formation + Delta-G solvation = -29.157680 kcal Electronic energy + Delta-G solvation = -28156.377207 eV Core-core repulsion = 24273.644442 eV Total energy + Delta-G solvation = -3882.732765 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.64555 -38.86926 -37.63665 -36.89803 -35.44337 -33.17709 -32.04358 -31.41497 -29.20637 -28.35651 -27.65749 -26.44201 -25.28713 -23.11509 -22.90124 -22.20471 -20.83558 -20.18614 -18.25051 -17.93379 -17.33115 -16.90607 -16.10186 -15.91526 -15.47388 -15.35963 -15.05377 -14.64461 -14.53261 -14.30703 -14.10150 -13.94598 -13.75283 -13.28898 -13.13920 -12.63477 -12.57767 -12.48165 -12.34126 -12.26679 -12.08489 -11.86264 -11.65124 -11.53052 -11.42567 -11.23611 -11.06086 -10.89833 -10.64472 -10.48097 -10.28460 -10.09881 -9.90562 -9.48593 -9.16928 -8.76229 -8.65968 -8.42063 -8.27606 -7.90515 -6.48039 -4.46975 0.84680 1.91043 2.36985 2.99840 3.03355 3.06762 3.11846 3.55915 3.78083 3.99814 4.02622 4.39884 4.60789 4.82087 4.98396 4.99238 5.07942 5.14788 5.16906 5.25126 5.31380 5.45508 5.49434 5.56403 5.57743 5.70091 5.70759 5.73486 5.80482 5.83162 5.90892 5.93107 6.04529 6.07987 6.14266 6.34509 6.35836 6.51353 6.66718 6.96038 6.98102 7.05574 7.14062 7.69003 7.84252 8.12442 8.30487 8.57109 8.69320 9.06582 10.62622 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011404 B = 0.003832 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.692830 B = 7304.884632 C = 8870.567062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.184 3.816 3 H 0.073 0.927 4 O -0.549 6.549 5 C -0.049 4.049 6 N -0.471 5.471 7 C 0.096 3.904 8 C -0.309 4.309 9 C 0.597 3.403 10 O -0.555 6.555 11 N -0.587 5.587 12 C 0.197 3.803 13 C -0.536 4.536 14 H 0.088 0.912 15 C 0.090 3.910 16 N -0.869 5.869 17 Si 0.844 3.156 18 H -0.265 1.265 19 H -0.274 1.274 20 H -0.253 1.253 21 C 0.126 3.874 22 C -0.131 4.131 23 C 0.058 3.942 24 N -0.549 5.549 25 C 0.022 3.978 26 C 0.025 3.975 27 S 0.344 5.656 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.375 0.625 32 H 0.175 0.825 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.272 0.728 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.035 0.965 41 H 0.077 0.923 42 H 0.025 0.975 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.491 -3.158 4.313 9.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.122 3.878 3 H 0.091 0.909 4 O -0.354 6.354 5 C -0.320 4.320 6 N -0.187 5.187 7 C -0.065 4.065 8 C -0.434 4.434 9 C 0.385 3.615 10 O -0.436 6.436 11 N -0.316 5.316 12 C 0.073 3.927 13 C -0.578 4.578 14 H 0.106 0.894 15 C -0.118 4.118 16 N -0.505 5.505 17 Si 0.669 3.331 18 H -0.190 1.190 19 H -0.199 1.199 20 H -0.178 1.178 21 C 0.003 3.997 22 C -0.170 4.170 23 C -0.070 4.070 24 N -0.272 5.272 25 C -0.127 4.127 26 C -0.123 4.123 27 S 0.610 5.390 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.222 0.778 32 H 0.192 0.808 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.095 0.905 42 H 0.043 0.957 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.437 -2.776 4.576 9.163 hybrid contribution -0.279 -0.508 -0.116 0.591 sum -7.717 -3.283 4.460 9.499 Atomic orbital electron populations 1.22467 0.94977 1.03617 1.02559 1.20042 0.92869 0.93052 0.81862 0.90913 1.86685 1.76640 1.57079 1.15009 1.28112 1.03808 0.95580 1.04494 1.66150 1.18228 1.13031 1.21262 1.21923 0.96357 1.00703 0.87543 1.25905 1.16755 0.98169 1.02580 1.16787 0.77766 0.84473 0.82448 1.90729 1.54879 1.22444 1.75553 1.47682 1.57034 1.08153 1.18763 1.20121 0.96090 0.79920 0.96542 1.21409 1.00886 0.99568 1.35986 0.89420 1.24825 0.96267 0.96673 0.94014 1.69863 1.31525 1.13965 1.35103 0.87269 0.84789 0.81403 0.79648 1.18984 1.19943 1.17753 1.21272 0.94091 1.02522 0.81847 1.21970 0.99211 1.02796 0.93054 1.22072 0.93143 1.00663 0.91118 1.61973 1.29767 1.33134 1.02367 1.22432 0.98340 0.89292 1.02597 1.22370 0.98138 1.01214 0.90626 1.86174 1.46588 1.03654 1.02598 0.91663 0.91002 0.91391 0.77808 0.80817 0.94843 0.93641 0.91769 0.90614 0.89707 0.90990 0.91514 0.94629 0.90499 0.95668 0.91750 0.90864 0.91335 0.91607 0.95813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 9.52 37.16 0.35 -1.77 16 2 C 0.18 2.74 4.08 -27.88 -0.11 2.63 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 O -0.55 -8.16 13.29 -35.23 -0.47 -8.63 16 5 C -0.05 -0.92 6.28 -13.29 -0.08 -1.00 16 6 N -0.47 -9.37 10.49 -11.50 -0.12 -9.49 16 7 C 0.10 1.90 11.10 -18.85 -0.21 1.69 16 8 C -0.31 -6.36 6.19 -37.10 -0.23 -6.59 16 9 C 0.60 12.68 7.63 -12.85 -0.10 12.58 16 10 O -0.55 -12.44 16.52 5.20 0.09 -12.35 16 11 N -0.59 -11.71 2.46 -176.60 -0.43 -12.14 16 12 C 0.20 4.08 3.74 -5.19 -0.02 4.06 16 13 C -0.54 -12.80 7.77 -34.44 -0.27 -13.07 16 14 H 0.09 2.39 8.06 -52.49 -0.42 1.97 16 15 C 0.09 2.17 5.20 -17.82 -0.09 2.08 16 16 N -0.87 -22.88 13.96 55.43 0.77 -22.11 16 17 Si 0.84 17.54 27.00 -169.99 -4.59 12.95 16 18 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.25 -4.86 6.54 56.52 0.37 -4.49 16 21 C 0.13 2.15 5.38 -4.04 -0.02 2.13 16 22 C -0.13 -1.95 5.46 -26.73 -0.15 -2.10 16 23 C 0.06 0.74 4.96 -3.83 -0.02 0.72 16 24 N -0.55 -6.70 5.02 -251.26 -1.26 -7.96 16 25 C 0.02 0.24 9.32 60.06 0.56 0.80 16 26 C 0.02 0.24 9.57 60.07 0.57 0.82 16 27 S 0.34 6.83 16.03 -107.50 -1.72 5.10 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.38 3.39 9.08 45.56 0.41 3.80 16 32 H 0.17 3.13 8.06 -52.49 -0.42 2.71 16 33 H 0.03 0.71 3.49 -23.33 -0.08 0.63 16 34 H 0.05 0.90 7.51 -51.93 -0.39 0.51 16 35 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 36 H 0.08 1.32 7.50 -51.93 -0.39 0.93 16 37 H 0.08 1.39 8.07 -51.93 -0.42 0.98 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.07 6.55 -51.93 -0.34 0.73 16 40 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 41 H 0.08 0.92 8.06 -51.93 -0.42 0.50 16 42 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.06 0.63 8.12 -51.93 -0.42 0.20 16 44 H 0.07 0.89 6.47 -51.93 -0.34 0.56 16 45 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 46 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 47 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 392.37 15.07 5.91 5.91 Total: -1.00 -30.11 392.37 -8.26 -38.37 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -6.62 Total: 7.37 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 0.19 Total: 2.98 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -1.04 Total: -51.70 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.38 Total: -20.98 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -4.59 Total: 12.95 kcal Atomic # 16 Polarization: 6.83 SS G_CDS: -1.72 Total: 5.10 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.11 -8.26 -38.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361680395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.210 kcal (2) G-P(sol) polarization free energy of solvation -30.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds