Wall clock time and date at job start Wed Apr 1 2020 00:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47262 * 2 1 4 4 N 1.46503 * 109.47351 * 120.00448 * 2 1 3 5 5 C 1.34778 * 119.99598 * 274.99585 * 4 2 1 6 6 O 1.21280 * 119.99985 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99729 * 179.72840 * 5 4 2 8 8 H 1.08996 * 109.47188 * 60.27591 * 7 5 4 9 9 C 1.50706 * 109.46671 * 300.27382 * 7 5 4 10 10 H 1.07998 * 120.00037 * 325.09666 * 9 7 5 11 11 C 1.37872 * 119.99471 * 145.10322 * 9 7 5 12 12 N 1.31515 * 119.99676 * 184.98148 * 11 9 7 13 13 Si 1.86800 * 120.00343 * 4.98285 * 11 9 7 14 14 H 1.48493 * 109.47190 * 84.67081 * 13 11 9 15 15 H 1.48502 * 109.46985 * 204.67038 * 13 11 9 16 16 H 1.48499 * 109.46827 * 324.66673 * 13 11 9 17 17 C 1.50701 * 109.46849 * 180.27592 * 7 5 4 18 18 C 1.38239 * 119.99984 * 65.01787 * 17 7 5 19 19 C 1.38236 * 119.99978 * 179.78378 * 18 17 7 20 20 C 1.38234 * 119.99770 * 0.44418 * 19 18 17 21 21 C 1.38233 * 120.00027 * 359.81215 * 20 19 18 22 22 C 1.38225 * 119.99962 * 245.28869 * 17 7 5 23 23 C 1.50710 * 109.46843 * 240.00276 * 2 1 3 24 24 N 1.31069 * 126.65796 * 284.68461 * 23 2 1 25 25 N 1.28836 * 107.99177 * 179.89673 * 24 23 2 26 26 N 1.28743 * 109.39666 * 0.37572 * 25 24 23 27 27 N 1.29018 * 108.80453 * 359.76854 * 26 25 24 28 28 C 1.46502 * 126.43527 * 179.97438 * 27 26 25 29 29 C 1.52999 * 117.49949 * 8.77512 * 28 27 26 30 30 C 1.52997 * 117.50264 * 300.11333 * 28 27 26 31 31 H 1.09006 * 109.47021 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46776 * 299.99692 * 1 2 3 33 33 H 1.08993 * 109.47102 * 59.99629 * 1 2 3 34 34 H 0.96993 * 120.00292 * 95.00445 * 4 2 1 35 35 H 0.97006 * 120.00484 * 180.02562 * 12 11 9 36 36 H 1.07997 * 119.99977 * 0.02562 * 18 17 7 37 37 H 1.08000 * 120.00042 * 180.27487 * 19 18 17 38 38 H 1.08004 * 120.00037 * 179.83197 * 20 19 18 39 39 H 1.08005 * 119.99743 * 180.02562 * 21 20 19 40 40 H 1.08002 * 120.00198 * 359.97438 * 22 17 7 41 41 H 1.09004 * 115.54989 * 154.43953 * 28 27 26 42 42 H 1.08999 * 117.50009 * 359.97438 * 29 28 27 43 43 H 1.09006 * 117.49972 * 145.01690 * 29 28 27 44 44 H 1.08999 * 117.49636 * 214.97849 * 30 28 27 45 45 H 1.09000 * 117.49652 * 359.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8583 1.1583 2.4117 7 6 2.6438 -0.7303 3.5890 8 1 3.6437 -1.1224 3.4038 9 6 1.7120 -1.8670 3.9220 10 1 0.6517 -1.7663 3.7431 11 6 2.2133 -3.0355 4.4552 12 7 1.4162 -4.0623 4.6546 13 14 4.0246 -3.1601 4.8946 14 1 4.2435 -2.6049 6.2543 15 1 4.4435 -4.5846 4.8683 16 1 4.8268 -2.3900 3.9104 17 6 2.6893 0.2367 4.7439 18 6 1.5184 0.7861 5.2320 19 6 1.5598 1.6697 6.2943 20 6 2.7729 2.0110 6.8625 21 6 3.9442 1.4657 6.3710 22 6 3.9024 0.5787 5.3115 23 6 2.0323 -0.7104 -1.2306 24 7 2.0418 -2.0045 -1.4380 25 7 2.5451 -2.2169 -2.6048 26 7 2.8643 -1.0922 -3.1439 27 7 2.5636 -0.1395 -2.3275 28 6 2.7635 1.2943 -2.5521 29 6 3.1949 1.7368 -3.9517 30 6 4.1945 1.7790 -2.7932 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.2492 -1.6318 1.1525 35 1 1.7687 -4.8844 5.0301 36 1 0.5710 0.5220 4.7860 37 1 0.6447 2.0955 6.6785 38 1 2.8055 2.7035 7.6907 39 1 4.8919 1.7321 6.8152 40 1 4.8175 0.1526 4.9276 41 1 2.0949 1.9545 -1.9994 42 1 3.3305 0.9610 -4.7053 43 1 2.8106 2.6882 -4.3197 44 1 4.4673 2.7581 -2.3994 45 1 4.9873 1.0311 -2.7842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361858108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:44 Heat of formation + Delta-G solvation = 135.957352 kcal Electronic energy + Delta-G solvation = -29621.232572 eV Core-core repulsion = 25642.508531 eV Total energy + Delta-G solvation = -3978.724040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.27384 -39.55937 -38.23517 -38.10973 -35.64755 -33.82489 -33.69430 -32.10518 -31.52664 -30.16446 -29.98334 -27.66720 -25.52691 -24.83916 -23.69579 -23.07452 -22.35157 -21.87956 -21.39129 -20.63117 -19.44240 -18.08211 -17.18079 -17.15146 -16.75114 -16.23791 -15.82097 -15.63323 -14.73561 -14.58184 -14.40611 -14.11379 -13.86739 -13.61091 -13.40795 -13.04991 -12.84581 -12.70965 -12.60779 -12.46953 -12.27554 -12.15145 -12.12669 -12.03637 -11.88758 -11.60701 -11.23698 -11.18658 -11.01807 -10.99342 -10.57076 -10.50015 -10.27126 -10.07836 -9.92879 -9.57532 -9.09041 -8.75209 -8.71909 -8.16967 -7.85280 -6.29892 -4.34839 1.03924 1.65397 2.11546 2.17024 2.20051 3.01951 3.15200 3.23759 3.27646 3.36978 3.55705 3.74187 3.87762 4.10483 4.20763 4.22401 4.45977 4.60121 4.88512 5.00831 5.03966 5.09749 5.16488 5.30030 5.38786 5.49529 5.51516 5.54653 5.58833 5.62796 5.70079 5.83200 5.91958 5.99665 6.07041 6.23449 6.28851 6.29127 6.42672 6.70494 6.80910 6.85317 7.13966 7.21891 7.25130 7.55728 7.76404 8.07023 8.21616 8.54626 8.68524 8.92192 9.27517 10.80900 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.003720 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.603652 B = 7524.459703 C = 8688.617155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.233 3.767 3 H 0.105 0.895 4 N -0.717 5.717 5 C 0.543 3.457 6 O -0.559 6.559 7 C 0.021 3.979 8 H 0.074 0.926 9 C -0.513 4.513 10 H 0.084 0.916 11 C 0.088 3.912 12 N -0.878 5.878 13 Si 0.864 3.136 14 H -0.267 1.267 15 H -0.284 1.284 16 H -0.263 1.263 17 C -0.027 4.027 18 C -0.072 4.072 19 C -0.129 4.129 20 C -0.143 4.143 21 C -0.128 4.128 22 C -0.137 4.137 23 C 0.186 3.814 24 N -0.285 5.285 25 N -0.073 5.073 26 N -0.100 5.100 27 N -0.276 5.276 28 C 0.045 3.955 29 C -0.153 4.153 30 C -0.162 4.162 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.417 0.583 35 H 0.270 0.730 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.162 0.838 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.433 13.505 -10.933 17.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.123 3.877 3 H 0.123 0.877 4 N -0.372 5.372 5 C 0.333 3.667 6 O -0.437 6.437 7 C -0.001 4.001 8 H 0.092 0.908 9 C -0.550 4.550 10 H 0.102 0.898 11 C -0.117 4.117 12 N -0.513 5.513 13 Si 0.691 3.309 14 H -0.192 1.192 15 H -0.210 1.210 16 H -0.188 1.188 17 C -0.028 4.028 18 C -0.090 4.090 19 C -0.147 4.147 20 C -0.161 4.161 21 C -0.146 4.146 22 C -0.155 4.155 23 C -0.092 4.092 24 N -0.134 5.134 25 N -0.067 5.067 26 N -0.085 5.085 27 N -0.077 5.077 28 C -0.058 4.058 29 C -0.191 4.191 30 C -0.200 4.200 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.254 0.746 35 H 0.080 0.920 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.180 0.820 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.472 12.909 -11.590 17.692 hybrid contribution 0.900 0.056 0.743 1.168 sum 4.372 12.965 -10.847 17.460 Atomic orbital electron populations 1.22199 0.92460 1.04137 1.02972 1.19090 0.95102 0.95168 0.78318 0.87681 1.45918 1.68528 1.15136 1.07609 1.21258 0.75285 0.86172 0.84033 1.90591 1.51397 1.16582 1.85153 1.18563 0.99995 0.94191 0.87310 0.90834 1.20493 0.94816 0.95266 1.44452 0.89761 1.24952 0.97525 0.95147 0.94110 1.69851 1.35748 1.03275 1.42450 0.87045 0.85951 0.77579 0.80278 1.19157 1.21020 1.18834 1.20056 0.92416 0.93479 0.96889 1.20839 0.98364 0.94882 0.94944 1.21034 0.97179 0.99187 0.97315 1.20865 0.92964 1.01558 1.00730 1.20883 0.97589 0.98579 0.97591 1.20972 0.97249 0.99252 0.98048 1.26295 0.99416 0.90403 0.93106 1.75089 1.17378 1.11155 1.09764 1.78659 1.11474 1.15038 1.01480 1.78790 1.19274 0.92223 1.18212 1.47841 1.39486 1.08632 1.11726 1.22423 1.02691 0.75467 1.05250 1.23455 1.01013 1.04142 0.90464 1.23556 0.91221 1.04057 1.01211 0.90718 0.89787 0.92180 0.74627 0.92032 0.86450 0.87115 0.87340 0.87290 0.87456 0.82039 0.86543 0.86279 0.86073 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.47 37.16 0.35 -1.74 16 2 C 0.23 3.30 2.94 -69.08 -0.20 3.10 16 3 H 0.11 1.35 6.66 -51.93 -0.35 1.01 16 4 N -0.72 -12.65 4.97 -54.93 -0.27 -12.92 16 5 C 0.54 10.91 7.00 -10.99 -0.08 10.83 16 6 O -0.56 -11.72 15.03 5.56 0.08 -11.64 16 7 C 0.02 0.46 1.90 -94.07 -0.18 0.28 16 8 H 0.07 1.61 4.89 -51.93 -0.25 1.36 16 9 C -0.51 -12.86 8.06 -34.44 -0.28 -13.14 16 10 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 11 C 0.09 2.32 5.47 -17.82 -0.10 2.22 16 12 N -0.88 -24.75 13.96 55.43 0.77 -23.97 16 13 Si 0.86 19.97 27.18 -169.99 -4.62 15.35 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.26 -5.67 6.06 56.52 0.34 -5.33 16 17 C -0.03 -0.59 4.09 -104.63 -0.43 -1.01 16 18 C -0.07 -1.50 8.25 -39.58 -0.33 -1.83 16 19 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 20 C -0.14 -2.41 10.05 -39.58 -0.40 -2.80 16 21 C -0.13 -2.24 10.05 -39.58 -0.40 -2.63 16 22 C -0.14 -2.70 9.46 -39.59 -0.37 -3.07 16 23 C 0.19 2.69 6.92 -155.44 -1.08 1.62 16 24 N -0.28 -4.89 12.08 32.70 0.40 -4.49 16 25 N -0.07 -1.24 13.43 60.35 0.81 -0.43 16 26 N -0.10 -1.45 12.69 60.35 0.77 -0.68 16 27 N -0.28 -3.42 3.67 -51.81 -0.19 -3.61 16 28 C 0.05 0.36 6.43 -67.93 -0.44 -0.08 16 29 C -0.15 -0.88 10.16 -26.69 -0.27 -1.15 16 30 C -0.16 -1.04 10.46 -26.69 -0.28 -1.32 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.42 7.76 8.25 -40.82 -0.34 7.42 16 35 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.12 2.50 7.93 -52.49 -0.42 2.09 16 37 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 39 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 40 H 0.11 1.97 7.95 -52.49 -0.42 1.56 16 41 H 0.16 0.92 7.60 -51.93 -0.39 0.52 16 42 H 0.12 0.81 7.85 -51.93 -0.41 0.40 16 43 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 384.54 15.07 5.79 5.79 Total: -1.00 -31.37 384.54 -7.32 -38.69 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -5.99 Total: 11.37 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -4.87 Total: -13.45 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 2.28 Total: -46.11 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.62 Total: 15.35 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.37 -7.32 -38.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361858108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.648 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds