Wall clock time and date at job start Wed Apr 1 2020 00:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47262 * 2 1 4 4 N 1.46503 * 109.47351 * 120.00448 * 2 1 3 5 5 C 1.34778 * 119.99598 * 274.99585 * 4 2 1 6 6 O 1.21280 * 119.99985 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99729 * 179.72840 * 5 4 2 8 8 H 1.08996 * 109.47188 * 60.27591 * 7 5 4 9 9 C 1.50706 * 109.46671 * 300.27382 * 7 5 4 10 10 H 1.07998 * 120.00037 * 325.09666 * 9 7 5 11 11 C 1.37872 * 119.99471 * 145.10322 * 9 7 5 12 12 N 1.31515 * 119.99676 * 184.98148 * 11 9 7 13 13 Si 1.86800 * 120.00343 * 4.98285 * 11 9 7 14 14 H 1.48493 * 109.47190 * 84.67081 * 13 11 9 15 15 H 1.48502 * 109.46985 * 204.67038 * 13 11 9 16 16 H 1.48499 * 109.46827 * 324.66673 * 13 11 9 17 17 C 1.50701 * 109.46849 * 180.27592 * 7 5 4 18 18 C 1.38239 * 119.99984 * 65.01787 * 17 7 5 19 19 C 1.38236 * 119.99978 * 179.78378 * 18 17 7 20 20 C 1.38234 * 119.99770 * 0.44418 * 19 18 17 21 21 C 1.38233 * 120.00027 * 359.81215 * 20 19 18 22 22 C 1.38225 * 119.99962 * 245.28869 * 17 7 5 23 23 C 1.50710 * 109.46843 * 240.00276 * 2 1 3 24 24 N 1.31069 * 126.65796 * 284.68461 * 23 2 1 25 25 N 1.28836 * 107.99177 * 179.89673 * 24 23 2 26 26 N 1.28743 * 109.39666 * 0.37572 * 25 24 23 27 27 N 1.29018 * 108.80453 * 359.76854 * 26 25 24 28 28 C 1.46502 * 126.43527 * 179.97438 * 27 26 25 29 29 C 1.52999 * 117.49949 * 8.77512 * 28 27 26 30 30 C 1.52997 * 117.50264 * 300.11333 * 28 27 26 31 31 H 1.09006 * 109.47021 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46776 * 299.99692 * 1 2 3 33 33 H 1.08993 * 109.47102 * 59.99629 * 1 2 3 34 34 H 0.96993 * 120.00292 * 95.00445 * 4 2 1 35 35 H 0.97006 * 120.00484 * 180.02562 * 12 11 9 36 36 H 1.07997 * 119.99977 * 0.02562 * 18 17 7 37 37 H 1.08000 * 120.00042 * 180.27487 * 19 18 17 38 38 H 1.08004 * 120.00037 * 179.83197 * 20 19 18 39 39 H 1.08005 * 119.99743 * 180.02562 * 21 20 19 40 40 H 1.08002 * 120.00198 * 359.97438 * 22 17 7 41 41 H 1.09004 * 115.54989 * 154.43953 * 28 27 26 42 42 H 1.08999 * 117.50009 * 359.97438 * 29 28 27 43 43 H 1.09006 * 117.49972 * 145.01690 * 29 28 27 44 44 H 1.08999 * 117.49636 * 214.97849 * 30 28 27 45 45 H 1.09000 * 117.49652 * 359.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8583 1.1583 2.4117 7 6 2.6438 -0.7303 3.5890 8 1 3.6437 -1.1224 3.4038 9 6 1.7120 -1.8670 3.9220 10 1 0.6517 -1.7663 3.7431 11 6 2.2133 -3.0355 4.4552 12 7 1.4162 -4.0623 4.6546 13 14 4.0246 -3.1601 4.8946 14 1 4.2435 -2.6049 6.2543 15 1 4.4435 -4.5846 4.8683 16 1 4.8268 -2.3900 3.9104 17 6 2.6893 0.2367 4.7439 18 6 1.5184 0.7861 5.2320 19 6 1.5598 1.6697 6.2943 20 6 2.7729 2.0110 6.8625 21 6 3.9442 1.4657 6.3710 22 6 3.9024 0.5787 5.3115 23 6 2.0323 -0.7104 -1.2306 24 7 2.0418 -2.0045 -1.4380 25 7 2.5451 -2.2169 -2.6048 26 7 2.8643 -1.0922 -3.1439 27 7 2.5636 -0.1395 -2.3275 28 6 2.7635 1.2943 -2.5521 29 6 3.1949 1.7368 -3.9517 30 6 4.1945 1.7790 -2.7932 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.2492 -1.6318 1.1525 35 1 1.7687 -4.8844 5.0301 36 1 0.5710 0.5220 4.7860 37 1 0.6447 2.0955 6.6785 38 1 2.8055 2.7035 7.6907 39 1 4.8919 1.7321 6.8152 40 1 4.8175 0.1526 4.9276 41 1 2.0949 1.9545 -1.9994 42 1 3.3305 0.9610 -4.7053 43 1 2.8106 2.6882 -4.3197 44 1 4.4673 2.7581 -2.3994 45 1 4.9873 1.0311 -2.7842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361858108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:43 Heat of formation + Delta-G solvation = 116.177988 kcal Electronic energy + Delta-G solvation = -29622.090269 eV Core-core repulsion = 25642.508531 eV Total energy + Delta-G solvation = -3979.581738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.40699 -41.10543 -39.55388 -38.90155 -36.99169 -35.51971 -34.79947 -33.53260 -33.19338 -31.59570 -31.22719 -29.28333 -26.52683 -26.06066 -25.43049 -23.73571 -23.42531 -23.27869 -22.46762 -21.91322 -20.95194 -19.12713 -18.98988 -18.33983 -18.05295 -17.75803 -17.17740 -16.42791 -16.20392 -15.99180 -15.86539 -15.47300 -15.21097 -14.80645 -14.63252 -14.45675 -14.31677 -14.17372 -13.95259 -13.75494 -13.49889 -13.46068 -13.27365 -13.13285 -12.97644 -12.75574 -12.70607 -12.60388 -12.22408 -12.03090 -11.95093 -11.74114 -11.64298 -11.58109 -11.39467 -11.01902 -10.90100 -10.56946 -10.18126 -9.61241 -9.34892 -8.33500 -6.40631 -0.04454 0.66174 0.71658 0.76940 0.96540 1.31011 1.37483 1.41586 1.76792 2.23643 2.29451 2.49108 2.61125 2.98119 3.09937 3.17978 3.40243 3.61079 3.68689 3.89876 4.00797 4.11801 4.14155 4.23674 4.28204 4.35677 4.39256 4.42520 4.57810 4.61354 4.62218 4.66107 4.73770 4.85139 4.89728 4.93234 5.04831 5.10714 5.16314 5.20913 5.35461 5.38967 5.45446 5.73005 5.77552 5.96994 6.21043 6.32582 6.52291 6.62712 7.24123 7.30719 7.38692 8.80854 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.003720 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.603652 B = 7524.459703 C = 8688.617155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.236 3.764 3 H 0.127 0.873 4 N -0.716 5.716 5 C 0.545 3.455 6 O -0.567 6.567 7 C 0.021 3.979 8 H 0.075 0.925 9 C -0.498 4.498 10 H 0.045 0.955 11 C 0.038 3.962 12 N -0.928 5.928 13 Si 0.916 3.084 14 H -0.264 1.264 15 H -0.287 1.287 16 H -0.238 1.238 17 C -0.054 4.054 18 C -0.100 4.100 19 C -0.132 4.132 20 C -0.136 4.136 21 C -0.125 4.125 22 C -0.153 4.153 23 C 0.184 3.816 24 N -0.317 5.317 25 N -0.105 5.105 26 N -0.095 5.095 27 N -0.259 5.259 28 C 0.011 3.989 29 C -0.135 4.135 30 C -0.156 4.156 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.410 0.590 35 H 0.269 0.731 36 H 0.094 0.906 37 H 0.135 0.865 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.117 0.883 41 H 0.189 0.811 42 H 0.102 0.898 43 H 0.153 0.847 44 H 0.148 0.852 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.289 17.060 -10.827 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.128 3.872 3 H 0.144 0.856 4 N -0.369 5.369 5 C 0.334 3.666 6 O -0.447 6.447 7 C -0.001 4.001 8 H 0.093 0.907 9 C -0.535 4.535 10 H 0.063 0.937 11 C -0.162 4.162 12 N -0.566 5.566 13 Si 0.741 3.259 14 H -0.189 1.189 15 H -0.214 1.214 16 H -0.162 1.162 17 C -0.055 4.055 18 C -0.118 4.118 19 C -0.150 4.150 20 C -0.154 4.154 21 C -0.143 4.143 22 C -0.171 4.171 23 C -0.094 4.094 24 N -0.166 5.166 25 N -0.099 5.099 26 N -0.081 5.081 27 N -0.060 5.060 28 C -0.091 4.091 29 C -0.173 4.173 30 C -0.195 4.195 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.246 0.754 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.153 0.847 38 H 0.167 0.833 39 H 0.163 0.837 40 H 0.135 0.865 41 H 0.206 0.794 42 H 0.121 0.879 43 H 0.171 0.829 44 H 0.166 0.834 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.335 16.500 -11.523 20.821 hybrid contribution 0.278 -0.875 0.661 1.131 sum 5.613 15.626 -10.862 19.841 Atomic orbital electron populations 1.22149 0.91727 1.03312 1.04052 1.19275 0.95585 0.95542 0.76792 0.85561 1.45902 1.67879 1.14780 1.08305 1.20865 0.75459 0.86019 0.84260 1.90568 1.51929 1.16769 1.85407 1.18496 0.99026 0.93663 0.88893 0.90741 1.20463 0.93564 0.96398 1.43106 0.93721 1.25644 1.01470 0.94811 0.94317 1.69985 1.37787 1.04059 1.44781 0.86199 0.81621 0.77567 0.80556 1.18904 1.21353 1.16233 1.20018 0.93650 0.94692 0.97141 1.20831 0.97380 0.96840 0.96754 1.21359 0.99208 0.98154 0.96242 1.21344 0.91965 1.01126 1.00959 1.21337 0.99535 0.97064 0.96363 1.21213 0.96774 1.00189 0.98958 1.26109 0.99860 0.89840 0.93621 1.74997 1.18362 1.13011 1.10280 1.78632 1.13082 1.16264 1.01879 1.78692 1.18753 0.92279 1.18346 1.48151 1.37478 1.09988 1.10414 1.23198 1.04772 0.73144 1.07943 1.23594 0.99669 1.04955 0.89047 1.23665 0.89749 1.04600 1.01439 0.92527 0.90988 0.88704 0.75404 0.92185 0.88795 0.84687 0.83346 0.83652 0.86462 0.79403 0.87918 0.82910 0.83386 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.47 71.98 0.68 -3.33 16 2 C 0.24 6.59 2.94 44.25 0.13 6.72 16 3 H 0.13 3.01 6.66 -2.39 -0.02 2.99 16 4 N -0.72 -25.76 4.97 -446.08 -2.21 -27.97 16 5 C 0.55 22.22 7.00 87.66 0.61 22.83 16 6 O -0.57 -23.74 15.03 -3.03 -0.05 -23.79 16 7 C 0.02 0.92 1.90 -13.03 -0.02 0.89 16 8 H 0.07 3.24 4.89 -2.39 -0.01 3.23 16 9 C -0.50 -26.09 8.06 25.60 0.21 -25.88 16 10 H 0.04 2.64 8.06 -2.91 -0.02 2.61 16 11 C 0.04 2.07 5.47 84.65 0.46 2.53 16 12 N -0.93 -54.76 13.96 21.45 0.30 -54.46 16 13 Si 0.92 41.44 27.18 68.60 1.86 43.30 16 14 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 15 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 16 H -0.24 -9.71 6.06 99.48 0.60 -9.11 16 17 C -0.05 -2.30 4.09 -19.87 -0.08 -2.38 16 18 C -0.10 -4.17 8.25 22.27 0.18 -3.98 16 19 C -0.13 -4.49 10.05 22.27 0.22 -4.27 16 20 C -0.14 -4.04 10.05 22.27 0.22 -3.82 16 21 C -0.13 -3.88 10.05 22.27 0.22 -3.66 16 22 C -0.15 -5.71 9.46 22.27 0.21 -5.49 16 23 C 0.18 5.28 6.92 138.14 0.96 6.24 16 24 N -0.32 -11.16 12.08 -50.45 -0.61 -11.77 16 25 N -0.11 -3.67 13.43 37.01 0.50 -3.17 16 26 N -0.10 -2.73 12.69 37.02 0.47 -2.26 16 27 N -0.26 -6.14 3.67 -317.81 -1.17 -7.30 16 28 C 0.01 0.14 6.43 44.99 0.29 0.43 16 29 C -0.14 -1.14 10.16 30.62 0.31 -0.83 16 30 C -0.16 -1.57 10.46 30.62 0.32 -1.25 16 31 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.41 15.91 8.25 -92.71 -0.77 15.15 16 35 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 36 H 0.09 4.23 7.93 -2.91 -0.02 4.21 16 37 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 38 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 39 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 40 H 0.12 4.02 7.95 -2.91 -0.02 3.99 16 41 H 0.19 1.44 7.60 -2.38 -0.02 1.42 16 42 H 0.10 1.22 7.85 -2.39 -0.02 1.20 16 43 H 0.15 0.30 8.14 -2.38 -0.02 0.28 16 44 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -72.23 384.54 4.18 -68.04 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: 0.16 Total: 34.64 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: 4.93 Total: -15.26 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -2.73 Total: -106.94 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.05 Total: -23.79 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.86 Total: 43.30 kcal Total: -72.23 4.18 -68.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361858108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.223 kcal (2) G-P(sol) polarization free energy of solvation -72.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds