Wall clock time and date at job start Wed Apr 1 2020 00:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47127 * 2 1 4 4 N 1.46501 * 109.47106 * 240.00103 * 2 1 3 5 5 C 1.34773 * 120.00034 * 85.00387 * 4 2 1 6 6 O 1.21284 * 120.00266 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00058 * 180.02562 * 5 4 2 8 8 H 1.08997 * 109.46866 * 299.99176 * 7 5 4 9 9 C 1.50694 * 109.47288 * 59.99465 * 7 5 4 10 10 H 1.07998 * 120.00314 * 33.93920 * 9 7 5 11 11 C 1.37878 * 119.99926 * 213.94464 * 9 7 5 12 12 N 1.31508 * 120.00104 * 6.38880 * 11 9 7 13 13 Si 1.86805 * 119.99898 * 186.38875 * 11 9 7 14 14 H 1.48505 * 109.46960 * 59.99957 * 13 11 9 15 15 H 1.48497 * 109.46897 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47064 * 299.99981 * 13 11 9 17 17 C 1.50704 * 109.46834 * 179.97438 * 7 5 4 18 18 C 1.38243 * 119.99955 * 293.84081 * 17 7 5 19 19 C 1.38232 * 119.99749 * 179.79139 * 18 17 7 20 20 C 1.38234 * 120.00217 * 0.44555 * 19 18 17 21 21 C 1.38247 * 119.99802 * 359.81023 * 20 19 18 22 22 C 1.38230 * 120.00043 * 114.12555 * 17 7 5 23 23 C 1.50702 * 109.47469 * 120.00020 * 2 1 3 24 24 N 1.31066 * 126.65867 * 74.97186 * 23 2 1 25 25 N 1.28846 * 107.98918 * 180.02562 * 24 23 2 26 26 N 1.28736 * 109.39621 * 0.02562 * 25 24 23 27 27 N 1.29021 * 108.81021 * 359.97438 * 26 25 24 28 28 C 1.46494 * 126.43477 * 179.97438 * 27 26 25 29 29 C 1.52994 * 117.50264 * 8.75294 * 28 27 26 30 30 C 1.52998 * 117.50229 * 300.08884 * 28 27 26 31 31 H 1.09003 * 109.47127 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47488 * 299.99826 * 1 2 3 33 33 H 1.09004 * 109.47505 * 59.99995 * 1 2 3 34 34 H 0.96997 * 119.99878 * 264.99393 * 4 2 1 35 35 H 0.97002 * 120.00081 * 180.02562 * 12 11 9 36 36 H 1.07995 * 119.99511 * 0.02562 * 18 17 7 37 37 H 1.07997 * 120.00106 * 180.27786 * 19 18 17 38 38 H 1.08001 * 120.00304 * 179.83203 * 20 19 18 39 39 H 1.08001 * 119.99625 * 180.02562 * 21 20 19 40 40 H 1.08004 * 120.00230 * 359.97133 * 22 17 7 41 41 H 1.09003 * 115.54554 * 154.41825 * 28 27 26 42 42 H 1.09003 * 117.50227 * 359.97438 * 29 28 27 43 43 H 1.09007 * 117.49989 * 145.01901 * 29 28 27 44 44 H 1.08999 * 117.49910 * 214.97510 * 30 28 27 45 45 H 1.08994 * 117.49962 * 359.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8583 1.1585 -2.4117 7 6 2.6489 -0.7287 -3.5877 8 1 3.6480 -1.1212 -3.3986 9 6 1.7186 -1.8649 -3.9263 10 1 0.6595 -1.7703 -3.7374 11 6 2.2196 -3.0254 -4.4770 12 7 3.5191 -3.1915 -4.5910 13 14 1.0523 -4.3617 -5.0613 14 1 0.1652 -3.8159 -6.1199 15 1 1.8355 -5.4979 -5.6097 16 1 0.2283 -4.8331 -3.9194 17 6 2.6991 0.2396 -4.7414 18 6 1.5284 0.7712 -5.2491 19 6 1.5748 1.6627 -6.3045 20 6 2.7913 2.0156 -6.8582 21 6 3.9617 1.4799 -6.3539 22 6 3.9155 0.5917 -5.2957 23 6 2.0324 -0.7104 1.2304 24 7 2.0362 -2.0041 1.4403 25 7 2.5435 -2.2167 2.6055 26 7 2.8628 -1.0921 3.1444 27 7 2.5634 -0.1394 2.3275 28 6 2.7630 1.2944 2.5523 29 6 3.5692 1.7109 3.7840 30 6 2.0541 1.9269 3.7516 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.2491 -1.6317 -1.1526 35 1 3.8716 -4.0078 -4.9789 36 1 0.5778 0.4929 -4.8187 37 1 0.6605 2.0815 -6.6983 38 1 2.8274 2.7101 -7.6846 39 1 4.9121 1.7559 -6.7863 40 1 4.8299 0.1732 -4.9018 41 1 2.8688 1.9009 1.6528 42 1 3.9508 0.9182 4.4275 43 1 4.2051 2.5918 3.6951 44 1 1.6940 2.9498 3.6413 45 1 1.4389 1.2764 4.3731 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361858111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:47 Heat of formation + Delta-G solvation = 131.175173 kcal Electronic energy + Delta-G solvation = -29492.641042 eV Core-core repulsion = 25513.709631 eV Total energy + Delta-G solvation = -3978.931411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.24218 -39.38559 -38.20977 -37.94458 -35.56657 -33.79624 -33.68437 -32.03854 -31.13577 -29.98371 -29.91628 -27.29015 -25.48290 -24.81682 -23.92825 -23.09687 -22.29221 -21.64232 -21.29674 -20.52560 -19.40718 -18.12828 -17.04552 -16.90448 -16.54459 -16.03971 -15.73179 -15.53102 -14.74685 -14.37374 -14.20872 -14.19355 -13.78147 -13.66308 -13.40296 -12.99561 -12.70637 -12.50517 -12.43767 -12.37519 -12.24105 -12.14174 -12.00228 -11.69353 -11.65388 -11.50519 -11.19208 -11.04716 -11.01293 -10.99436 -10.53879 -10.41175 -10.31931 -10.10073 -9.99198 -9.49510 -8.86739 -8.67000 -8.62318 -7.99542 -7.67002 -6.27923 -4.33623 1.07659 1.68358 2.20970 2.32725 2.35582 3.04552 3.25374 3.30068 3.30809 3.50919 3.63061 3.75525 3.93553 4.11931 4.24794 4.30054 4.50934 4.77778 4.90036 5.04603 5.09874 5.13201 5.18620 5.33336 5.40646 5.51004 5.60291 5.65978 5.68133 5.75024 5.83370 5.86825 6.05407 6.15499 6.22226 6.28573 6.44915 6.54801 6.82009 6.92196 6.93903 7.14519 7.32574 7.39662 7.61526 7.73134 7.90435 8.02450 8.20800 8.57447 8.69097 9.05512 9.32696 10.80764 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010870 B = 0.003658 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.365547 B = 7651.811927 C = 9256.928837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.232 3.768 3 H 0.104 0.896 4 N -0.719 5.719 5 C 0.535 3.465 6 O -0.566 6.566 7 C 0.051 3.949 8 H 0.093 0.907 9 C -0.518 4.518 10 H 0.064 0.936 11 C 0.078 3.922 12 N -0.878 5.878 13 Si 0.897 3.103 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.272 1.272 17 C -0.012 4.012 18 C -0.084 4.084 19 C -0.134 4.134 20 C -0.148 4.148 21 C -0.132 4.132 22 C -0.120 4.120 23 C 0.188 3.812 24 N -0.287 5.287 25 N -0.073 5.073 26 N -0.100 5.100 27 N -0.276 5.276 28 C 0.046 3.954 29 C -0.153 4.153 30 C -0.162 4.162 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.417 0.583 35 H 0.268 0.732 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.162 0.838 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.338 11.186 11.119 15.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.123 3.877 3 H 0.121 0.879 4 N -0.374 5.374 5 C 0.325 3.675 6 O -0.444 6.444 7 C 0.030 3.970 8 H 0.111 0.889 9 C -0.555 4.555 10 H 0.082 0.918 11 C -0.128 4.128 12 N -0.514 5.514 13 Si 0.724 3.276 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.197 1.197 17 C -0.013 4.013 18 C -0.102 4.102 19 C -0.153 4.153 20 C -0.166 4.166 21 C -0.150 4.150 22 C -0.138 4.138 23 C -0.090 4.090 24 N -0.136 5.136 25 N -0.067 5.067 26 N -0.086 5.086 27 N -0.077 5.077 28 C -0.058 4.058 29 C -0.191 4.191 30 C -0.200 4.200 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.254 0.746 35 H 0.078 0.922 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.180 0.820 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.107 10.666 11.781 15.931 hybrid contribution -0.523 -0.486 -0.827 1.093 sum -1.629 10.180 10.954 15.042 Atomic orbital electron populations 1.22180 0.92636 1.03822 1.02957 1.19076 0.94992 0.95177 0.78502 0.87865 1.45998 1.68687 1.15189 1.07541 1.21778 0.74981 0.86273 0.84428 1.90579 1.51714 1.16832 1.85321 1.18116 1.01165 0.92148 0.85533 0.88902 1.20603 0.93384 0.97432 1.44100 0.91828 1.24936 0.95198 0.98085 0.94554 1.69855 1.11343 1.27402 1.42776 0.86549 0.80824 0.80733 0.79468 1.19929 1.21098 1.19737 1.20046 0.92024 0.92533 0.96702 1.20828 0.98376 0.95640 0.95335 1.20961 0.96956 0.99511 0.97822 1.20810 0.93049 1.01914 1.00872 1.20906 0.97336 0.98894 0.97850 1.21001 0.97710 0.97872 0.97257 1.26303 0.99129 0.90401 0.93201 1.75069 1.17477 1.11202 1.09813 1.78646 1.11412 1.15059 1.01575 1.78783 1.19241 0.92202 1.18328 1.47825 1.39417 1.08604 1.11824 1.22429 1.10589 0.75262 0.97505 1.23455 0.94664 1.04179 0.96818 1.23548 0.95974 1.02834 0.97688 0.90978 0.92183 0.89886 0.74614 0.92182 0.87015 0.87568 0.87705 0.87555 0.87008 0.82032 0.86529 0.86257 0.86123 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.47 37.16 0.35 -1.71 16 2 C 0.23 3.36 2.96 -69.08 -0.20 3.15 16 3 H 0.10 1.38 6.42 -51.93 -0.33 1.04 16 4 N -0.72 -12.92 4.97 -54.93 -0.27 -13.20 16 5 C 0.53 11.08 7.01 -10.99 -0.08 11.00 16 6 O -0.57 -12.28 15.08 5.55 0.08 -12.19 16 7 C 0.05 1.18 2.44 -94.08 -0.23 0.95 16 8 H 0.09 2.30 7.00 -51.93 -0.36 1.93 16 9 C -0.52 -12.68 7.46 -34.44 -0.26 -12.94 16 10 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 11 C 0.08 1.96 5.45 -17.82 -0.10 1.87 16 12 N -0.88 -23.15 12.78 55.43 0.71 -22.44 16 13 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 C -0.01 -0.27 4.30 -104.62 -0.45 -0.72 16 18 C -0.08 -1.80 8.31 -39.58 -0.33 -2.13 16 19 C -0.13 -2.54 10.05 -39.58 -0.40 -2.94 16 20 C -0.15 -2.65 10.05 -39.58 -0.40 -3.05 16 21 C -0.13 -2.46 10.05 -39.58 -0.40 -2.85 16 22 C -0.12 -2.54 9.67 -39.59 -0.38 -2.92 16 23 C 0.19 2.77 6.91 -155.44 -1.07 1.69 16 24 N -0.29 -4.95 12.09 32.70 0.40 -4.55 16 25 N -0.07 -1.26 13.43 60.35 0.81 -0.45 16 26 N -0.10 -1.48 12.69 60.35 0.77 -0.72 16 27 N -0.28 -3.50 3.67 -51.81 -0.19 -3.69 16 28 C 0.05 0.38 6.59 -67.94 -0.45 -0.07 16 29 C -0.15 -0.95 10.16 -26.70 -0.27 -1.22 16 30 C -0.16 -0.94 10.46 -26.69 -0.28 -1.22 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.42 7.94 8.26 -40.82 -0.34 7.60 16 35 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 36 H 0.11 2.41 7.89 -52.49 -0.41 2.00 16 37 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.11 2.29 7.96 -52.48 -0.42 1.87 16 41 H 0.16 1.09 7.23 -51.93 -0.38 0.72 16 42 H 0.12 0.86 7.85 -51.93 -0.41 0.45 16 43 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.12 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 388.67 15.07 5.86 5.86 Total: -1.00 -30.18 388.67 -7.80 -37.99 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -6.00 Total: 11.40 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -4.94 Total: -13.11 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 2.22 Total: -45.05 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.08 Total: -12.19 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.18 -7.80 -37.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361858111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.161 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds