Wall clock time and date at job start Wed Apr 1 2020 00:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47127 * 2 1 4 4 N 1.46501 * 109.47106 * 240.00103 * 2 1 3 5 5 C 1.34773 * 120.00034 * 85.00387 * 4 2 1 6 6 O 1.21284 * 120.00266 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00058 * 180.02562 * 5 4 2 8 8 H 1.08997 * 109.46866 * 299.99176 * 7 5 4 9 9 C 1.50694 * 109.47288 * 59.99465 * 7 5 4 10 10 H 1.07998 * 120.00314 * 33.93920 * 9 7 5 11 11 C 1.37878 * 119.99926 * 213.94464 * 9 7 5 12 12 N 1.31508 * 120.00104 * 6.38880 * 11 9 7 13 13 Si 1.86805 * 119.99898 * 186.38875 * 11 9 7 14 14 H 1.48505 * 109.46960 * 59.99957 * 13 11 9 15 15 H 1.48497 * 109.46897 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47064 * 299.99981 * 13 11 9 17 17 C 1.50704 * 109.46834 * 179.97438 * 7 5 4 18 18 C 1.38243 * 119.99955 * 293.84081 * 17 7 5 19 19 C 1.38232 * 119.99749 * 179.79139 * 18 17 7 20 20 C 1.38234 * 120.00217 * 0.44555 * 19 18 17 21 21 C 1.38247 * 119.99802 * 359.81023 * 20 19 18 22 22 C 1.38230 * 120.00043 * 114.12555 * 17 7 5 23 23 C 1.50702 * 109.47469 * 120.00020 * 2 1 3 24 24 N 1.31066 * 126.65867 * 74.97186 * 23 2 1 25 25 N 1.28846 * 107.98918 * 180.02562 * 24 23 2 26 26 N 1.28736 * 109.39621 * 0.02562 * 25 24 23 27 27 N 1.29021 * 108.81021 * 359.97438 * 26 25 24 28 28 C 1.46494 * 126.43477 * 179.97438 * 27 26 25 29 29 C 1.52994 * 117.50264 * 8.75294 * 28 27 26 30 30 C 1.52998 * 117.50229 * 300.08884 * 28 27 26 31 31 H 1.09003 * 109.47127 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47488 * 299.99826 * 1 2 3 33 33 H 1.09004 * 109.47505 * 59.99995 * 1 2 3 34 34 H 0.96997 * 119.99878 * 264.99393 * 4 2 1 35 35 H 0.97002 * 120.00081 * 180.02562 * 12 11 9 36 36 H 1.07995 * 119.99511 * 0.02562 * 18 17 7 37 37 H 1.07997 * 120.00106 * 180.27786 * 19 18 17 38 38 H 1.08001 * 120.00304 * 179.83203 * 20 19 18 39 39 H 1.08001 * 119.99625 * 180.02562 * 21 20 19 40 40 H 1.08004 * 120.00230 * 359.97133 * 22 17 7 41 41 H 1.09003 * 115.54554 * 154.41825 * 28 27 26 42 42 H 1.09003 * 117.50227 * 359.97438 * 29 28 27 43 43 H 1.09007 * 117.49989 * 145.01901 * 29 28 27 44 44 H 1.08999 * 117.49910 * 214.97510 * 30 28 27 45 45 H 1.08994 * 117.49962 * 359.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8583 1.1585 -2.4117 7 6 2.6489 -0.7287 -3.5877 8 1 3.6480 -1.1212 -3.3986 9 6 1.7186 -1.8649 -3.9263 10 1 0.6595 -1.7703 -3.7374 11 6 2.2196 -3.0254 -4.4770 12 7 3.5191 -3.1915 -4.5910 13 14 1.0523 -4.3617 -5.0613 14 1 0.1652 -3.8159 -6.1199 15 1 1.8355 -5.4979 -5.6097 16 1 0.2283 -4.8331 -3.9194 17 6 2.6991 0.2396 -4.7414 18 6 1.5284 0.7712 -5.2491 19 6 1.5748 1.6627 -6.3045 20 6 2.7913 2.0156 -6.8582 21 6 3.9617 1.4799 -6.3539 22 6 3.9155 0.5917 -5.2957 23 6 2.0324 -0.7104 1.2304 24 7 2.0362 -2.0041 1.4403 25 7 2.5435 -2.2167 2.6055 26 7 2.8628 -1.0921 3.1444 27 7 2.5634 -0.1394 2.3275 28 6 2.7630 1.2944 2.5523 29 6 3.5692 1.7109 3.7840 30 6 2.0541 1.9269 3.7516 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.2491 -1.6317 -1.1526 35 1 3.8716 -4.0078 -4.9789 36 1 0.5778 0.4929 -4.8187 37 1 0.6605 2.0815 -6.6983 38 1 2.8274 2.7101 -7.6846 39 1 4.9121 1.7559 -6.7863 40 1 4.8299 0.1732 -4.9018 41 1 2.8688 1.9009 1.6528 42 1 3.9508 0.9182 4.4275 43 1 4.2051 2.5918 3.6951 44 1 1.6940 2.9498 3.6413 45 1 1.4389 1.2764 4.3731 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361858111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:46 Heat of formation + Delta-G solvation = 113.588011 kcal Electronic energy + Delta-G solvation = -29493.403678 eV Core-core repulsion = 25513.709631 eV Total energy + Delta-G solvation = -3979.694048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.39552 -40.98106 -39.46140 -38.89661 -36.94272 -35.51159 -34.78823 -33.39974 -32.84447 -31.51316 -31.17847 -28.95402 -26.50079 -26.10019 -25.62007 -23.75227 -23.34291 -23.16149 -22.42535 -21.86308 -20.96057 -19.11473 -18.63944 -18.13880 -18.02601 -17.64264 -17.12772 -16.42519 -16.17007 -15.90153 -15.74134 -15.54181 -15.21008 -14.76150 -14.50945 -14.42676 -14.10711 -13.98848 -13.89870 -13.51939 -13.36058 -13.31396 -13.24196 -13.08944 -12.84518 -12.77570 -12.74250 -12.58057 -12.21044 -12.18736 -11.95317 -11.73802 -11.65455 -11.56348 -11.27991 -11.01208 -10.69538 -10.45438 -10.12971 -9.53677 -9.25337 -8.21493 -6.30875 -0.02719 0.73266 0.77973 0.83063 0.97606 1.44993 1.45106 1.51595 1.86254 2.30986 2.43376 2.47527 2.62569 3.09170 3.11994 3.28167 3.41407 3.58627 3.70518 3.93969 4.03681 4.15068 4.24597 4.32657 4.36803 4.38584 4.49007 4.55808 4.62201 4.63069 4.68587 4.77308 4.89954 4.90325 4.99061 5.05886 5.11108 5.13878 5.17422 5.37712 5.46174 5.49392 5.65808 5.81113 5.84966 5.95415 6.24549 6.41281 6.59316 6.75852 7.35204 7.37664 7.43273 8.86697 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010870 B = 0.003658 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.365547 B = 7651.811927 C = 9256.928837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.235 3.765 3 H 0.120 0.880 4 N -0.716 5.716 5 C 0.540 3.460 6 O -0.576 6.576 7 C 0.051 3.949 8 H 0.065 0.935 9 C -0.515 4.515 10 H 0.058 0.942 11 C 0.036 3.964 12 N -0.907 5.907 13 Si 0.948 3.052 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.268 1.268 17 C -0.038 4.038 18 C -0.106 4.106 19 C -0.134 4.134 20 C -0.142 4.142 21 C -0.130 4.130 22 C -0.144 4.144 23 C 0.185 3.815 24 N -0.316 5.316 25 N -0.105 5.105 26 N -0.096 5.096 27 N -0.259 5.259 28 C 0.007 3.993 29 C -0.145 4.145 30 C -0.141 4.141 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.410 0.590 35 H 0.266 0.734 36 H 0.100 0.900 37 H 0.137 0.863 38 H 0.146 0.854 39 H 0.138 0.862 40 H 0.104 0.896 41 H 0.179 0.821 42 H 0.102 0.898 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.983 13.906 10.954 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.127 3.873 3 H 0.138 0.862 4 N -0.369 5.369 5 C 0.329 3.671 6 O -0.456 6.456 7 C 0.030 3.970 8 H 0.083 0.917 9 C -0.553 4.553 10 H 0.076 0.924 11 C -0.166 4.166 12 N -0.544 5.544 13 Si 0.773 3.227 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.193 1.193 17 C -0.039 4.039 18 C -0.125 4.125 19 C -0.152 4.152 20 C -0.160 4.160 21 C -0.147 4.147 22 C -0.162 4.162 23 C -0.094 4.094 24 N -0.166 5.166 25 N -0.099 5.099 26 N -0.082 5.082 27 N -0.061 5.061 28 C -0.094 4.094 29 C -0.182 4.182 30 C -0.179 4.179 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.246 0.754 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.155 0.845 38 H 0.164 0.836 39 H 0.156 0.844 40 H 0.122 0.878 41 H 0.196 0.804 42 H 0.120 0.880 43 H 0.166 0.834 44 H 0.170 0.830 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.764 13.401 11.651 17.845 hybrid contribution -0.282 -1.175 -0.713 1.402 sum -2.045 12.226 10.939 16.532 Atomic orbital electron populations 1.22124 0.91389 1.03407 1.04013 1.19271 0.95855 0.95298 0.76874 0.86190 1.45929 1.67982 1.14785 1.08167 1.21286 0.75114 0.86020 0.84658 1.90551 1.52419 1.16968 1.85623 1.18002 0.99376 0.92375 0.87290 0.91664 1.20733 0.93253 0.97990 1.43303 0.92412 1.25541 0.96229 0.99868 0.94954 1.69963 1.12574 1.27800 1.44109 0.85755 0.79219 0.78656 0.79022 1.19863 1.21103 1.19266 1.20072 0.93187 0.93618 0.97051 1.20865 0.97434 0.97253 0.96909 1.21337 0.98941 0.98270 0.96608 1.21282 0.92033 1.01526 1.01169 1.21285 0.99370 0.97497 0.96592 1.21130 0.97028 0.99344 0.98740 1.26137 0.99595 0.89900 0.93763 1.74973 1.18403 1.12924 1.10257 1.78616 1.13009 1.16241 1.01989 1.78687 1.18745 0.92246 1.18518 1.48131 1.37395 1.09941 1.10596 1.23122 1.13787 0.72957 0.99535 1.23594 0.95526 1.04505 0.94584 1.23684 0.95588 1.03762 0.94874 0.92148 0.88974 0.90854 0.75418 0.92467 0.88195 0.84538 0.83608 0.84430 0.87788 0.80353 0.87970 0.83448 0.82979 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.47 71.98 0.68 -3.16 16 2 C 0.24 6.72 2.96 44.24 0.13 6.85 16 3 H 0.12 3.04 6.42 -2.39 -0.02 3.03 16 4 N -0.72 -26.42 4.97 -446.09 -2.22 -28.64 16 5 C 0.54 22.95 7.01 87.66 0.61 23.56 16 6 O -0.58 -25.13 15.08 -3.04 -0.05 -25.18 16 7 C 0.05 2.43 2.44 -13.03 -0.03 2.40 16 8 H 0.07 3.44 7.00 -2.39 -0.02 3.42 16 9 C -0.52 -26.08 7.46 25.60 0.19 -25.89 16 10 H 0.06 2.93 7.82 -2.91 -0.02 2.90 16 11 C 0.04 1.87 5.45 84.66 0.46 2.33 16 12 N -0.91 -49.53 12.78 21.45 0.27 -49.25 16 13 Si 0.95 42.03 29.54 68.60 2.03 44.06 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 15 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 16 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 17 C -0.04 -1.76 4.30 -19.86 -0.09 -1.84 16 18 C -0.11 -4.57 8.31 22.27 0.19 -4.38 16 19 C -0.13 -4.76 10.05 22.27 0.22 -4.53 16 20 C -0.14 -4.61 10.05 22.27 0.22 -4.39 16 21 C -0.13 -4.56 10.05 22.27 0.22 -4.34 16 22 C -0.14 -6.14 9.67 22.27 0.22 -5.93 16 23 C 0.18 5.42 6.91 138.14 0.95 6.37 16 24 N -0.32 -11.19 12.09 -50.45 -0.61 -11.80 16 25 N -0.11 -3.71 13.43 37.01 0.50 -3.22 16 26 N -0.10 -2.84 12.69 37.02 0.47 -2.37 16 27 N -0.26 -6.39 3.67 -317.84 -1.17 -7.56 16 28 C 0.01 0.11 6.59 44.99 0.30 0.40 16 29 C -0.14 -1.42 10.16 30.62 0.31 -1.11 16 30 C -0.14 -1.22 10.46 30.62 0.32 -0.90 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.41 16.38 8.26 -92.71 -0.77 15.61 16 35 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 36 H 0.10 4.40 7.89 -2.91 -0.02 4.37 16 37 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 38 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 39 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 40 H 0.10 4.44 7.96 -2.91 -0.02 4.42 16 41 H 0.18 1.94 7.23 -2.39 -0.02 1.93 16 42 H 0.10 1.36 7.85 -2.39 -0.02 1.34 16 43 H 0.15 0.63 8.14 -2.38 -0.02 0.61 16 44 H 0.15 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -67.90 388.67 4.40 -63.49 By element: Atomic # 1 Polarization: 34.77 SS G_CDS: 0.26 Total: 35.03 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 4.92 Total: -14.56 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -2.75 Total: -102.84 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.05 Total: -25.18 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -67.90 4.40 -63.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361858111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.079 kcal (2) G-P(sol) polarization free energy of solvation -67.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds