Wall clock time and date at job start Wed Apr 1 2020 00:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46795 * 2 1 4 4 N 1.46496 * 109.47012 * 120.00664 * 2 1 3 5 5 C 1.34783 * 119.99639 * 274.99471 * 4 2 1 6 6 O 1.21281 * 120.00007 * 0.02562 * 5 4 2 7 7 C 1.50693 * 120.00138 * 180.02562 * 5 4 2 8 8 H 1.09006 * 109.47207 * 300.00421 * 7 5 4 9 9 C 1.50706 * 109.46996 * 59.99882 * 7 5 4 10 10 H 1.07996 * 119.99377 * 26.77793 * 9 7 5 11 11 C 1.37877 * 120.00100 * 206.76309 * 9 7 5 12 12 N 1.31511 * 120.00102 * 353.18205 * 11 9 7 13 13 Si 1.86800 * 119.99802 * 173.44655 * 11 9 7 14 14 H 1.48500 * 109.46897 * 179.73219 * 13 11 9 15 15 H 1.48503 * 109.47422 * 299.73260 * 13 11 9 16 16 H 1.48503 * 109.47033 * 59.73164 * 13 11 9 17 17 C 1.50702 * 109.47407 * 180.02562 * 7 5 4 18 18 C 1.38230 * 120.00035 * 292.99342 * 17 7 5 19 19 C 1.38227 * 120.00096 * 179.78763 * 18 17 7 20 20 C 1.38237 * 120.00033 * 0.43760 * 19 18 17 21 21 C 1.38229 * 119.99662 * 359.81517 * 20 19 18 22 22 C 1.38234 * 119.99707 * 113.26131 * 17 7 5 23 23 C 1.50706 * 109.46933 * 240.00320 * 2 1 3 24 24 N 1.31076 * 126.65663 * 284.68833 * 23 2 1 25 25 N 1.28839 * 107.98443 * 179.89957 * 24 23 2 26 26 N 1.28732 * 109.40128 * 0.36831 * 25 24 23 27 27 N 1.29021 * 108.81016 * 359.77349 * 26 25 24 28 28 C 1.46498 * 126.44132 * 179.97438 * 27 26 25 29 29 C 1.52998 * 117.49827 * 8.76812 * 28 27 26 30 30 C 1.52997 * 117.49737 * 300.11075 * 28 27 26 31 31 H 1.09007 * 109.47349 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47516 * 299.99852 * 1 2 3 33 33 H 1.09005 * 109.47537 * 60.00041 * 1 2 3 34 34 H 0.96996 * 120.00481 * 94.99939 * 4 2 1 35 35 H 0.97006 * 120.00141 * 354.82817 * 12 11 9 36 36 H 1.07999 * 119.99939 * 359.97438 * 18 17 7 37 37 H 1.08004 * 120.00332 * 180.27357 * 19 18 17 38 38 H 1.08003 * 120.00141 * 179.83624 * 20 19 18 39 39 H 1.08007 * 119.99707 * 179.97438 * 21 20 19 40 40 H 1.07993 * 120.00396 * 359.97438 * 22 17 7 41 41 H 1.08993 * 115.55291 * 154.44086 * 28 27 26 42 42 H 1.09004 * 117.50257 * 0.02562 * 29 28 27 43 43 H 1.08996 * 117.49730 * 145.02005 * 29 28 27 44 44 H 1.09004 * 117.50227 * 214.98113 * 30 28 27 45 45 H 1.09006 * 117.50059 * 359.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8583 1.1583 2.4117 7 6 2.6499 -0.7287 3.5874 8 1 1.9777 -1.5510 3.8324 9 6 4.0316 -1.2704 3.3252 10 1 4.6694 -0.7927 2.5963 11 6 4.4812 -2.3757 4.0160 12 7 3.7614 -2.8762 4.9962 13 14 6.1165 -3.1577 3.5644 14 1 6.3725 -4.3186 4.4544 15 1 6.0728 -3.6164 2.1527 16 1 7.2041 -2.1598 3.7272 17 6 2.7000 0.2395 4.7412 18 6 3.5978 1.2904 4.7232 19 6 3.6407 2.1809 5.7795 20 6 2.7920 2.0153 6.8581 21 6 1.8978 0.9614 6.8785 22 6 1.8519 0.0733 5.8201 23 6 2.0323 -0.7104 -1.2306 24 7 2.0417 -2.0046 -1.4380 25 7 2.5452 -2.2168 -2.6048 26 7 2.8643 -1.0922 -3.1438 27 7 2.5636 -0.1394 -2.3275 28 6 2.7634 1.2944 -2.5520 29 6 3.1950 1.7369 -3.9516 30 6 4.1945 1.7790 -2.7930 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.2490 -1.6319 1.1525 35 1 2.9519 -2.4250 5.2829 36 1 4.2636 1.4174 3.8825 37 1 4.3391 3.0046 5.7635 38 1 2.8274 2.7096 7.6847 39 1 1.2351 0.8317 7.7213 40 1 1.1532 -0.7500 5.8360 41 1 2.0949 1.9545 -1.9994 42 1 3.3299 0.9612 -4.7055 43 1 2.8107 2.6882 -4.3195 44 1 4.4674 2.7581 -2.3992 45 1 4.9874 1.0311 -2.7841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361858117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:49 Heat of formation + Delta-G solvation = 128.173441 kcal Electronic energy + Delta-G solvation = -29686.491081 eV Core-core repulsion = 25707.429505 eV Total energy + Delta-G solvation = -3979.061576 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.26400 -39.53560 -38.20848 -38.05970 -35.66986 -34.03352 -33.80603 -32.11063 -30.94346 -30.09058 -30.01437 -27.17646 -25.51407 -24.84034 -23.75511 -23.04936 -22.36302 -21.69686 -21.36892 -20.63077 -19.61345 -18.15878 -17.42776 -17.13866 -16.63493 -15.90334 -15.82017 -15.60485 -14.81199 -14.50557 -14.13025 -14.01476 -13.84939 -13.68124 -13.45296 -13.15069 -12.86293 -12.60310 -12.51585 -12.35554 -12.26504 -12.14571 -12.11343 -12.06997 -11.68584 -11.61700 -11.23400 -11.03290 -11.00454 -10.87972 -10.55676 -10.35964 -10.24412 -10.19090 -10.06318 -9.07368 -8.96505 -8.77367 -8.64460 -8.08727 -7.72019 -6.58052 -4.36428 1.05213 1.67034 2.17797 2.22738 2.27358 3.04756 3.32227 3.36772 3.41026 3.54987 3.57853 3.71821 3.87252 4.13114 4.22854 4.38569 4.47814 4.69577 4.88235 5.03094 5.06896 5.13785 5.17471 5.27720 5.41493 5.49004 5.52879 5.61086 5.63168 5.64472 5.71254 5.77926 5.99084 6.02691 6.08671 6.13640 6.33768 6.40598 6.56237 6.80958 6.81914 6.92254 7.23516 7.29044 7.51845 7.76058 7.88164 8.07189 8.16105 8.54888 8.57306 8.91666 9.35651 10.79790 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.003826 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.055122 B = 7317.339366 C = 8468.539174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.231 3.769 3 H 0.105 0.895 4 N -0.718 5.718 5 C 0.541 3.459 6 O -0.561 6.561 7 C 0.046 3.954 8 H 0.068 0.932 9 C -0.596 4.596 10 H 0.056 0.944 11 C 0.036 3.964 12 N -0.890 5.890 13 Si 1.063 2.937 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.287 1.287 17 C -0.020 4.020 18 C -0.078 4.078 19 C -0.133 4.133 20 C -0.145 4.145 21 C -0.128 4.128 22 C -0.127 4.127 23 C 0.188 3.812 24 N -0.288 5.288 25 N -0.073 5.073 26 N -0.099 5.099 27 N -0.275 5.275 28 C 0.044 3.956 29 C -0.153 4.153 30 C -0.161 4.161 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.416 0.584 35 H 0.275 0.725 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.162 0.838 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.701 10.620 -11.253 15.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.122 3.878 3 H 0.123 0.877 4 N -0.373 5.373 5 C 0.331 3.669 6 O -0.439 6.439 7 C 0.025 3.975 8 H 0.086 0.914 9 C -0.633 4.633 10 H 0.074 0.926 11 C -0.172 4.172 12 N -0.524 5.524 13 Si 0.890 3.110 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.213 1.213 17 C -0.021 4.021 18 C -0.096 4.096 19 C -0.151 4.151 20 C -0.163 4.163 21 C -0.146 4.146 22 C -0.145 4.145 23 C -0.091 4.091 24 N -0.137 5.137 25 N -0.066 5.066 26 N -0.084 5.084 27 N -0.075 5.075 28 C -0.059 4.059 29 C -0.191 4.191 30 C -0.199 4.199 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.253 0.747 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.179 0.821 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.646 8.959 -11.619 14.909 hybrid contribution -0.877 1.669 0.077 1.887 sum -3.523 10.628 -11.542 16.081 Atomic orbital electron populations 1.22209 0.92735 1.03745 1.03100 1.19076 0.94714 0.95497 0.78509 0.87688 1.45960 1.68555 1.15194 1.07621 1.21412 0.74065 0.86731 0.84684 1.90588 1.51086 1.16637 1.85610 1.18147 0.99526 0.93210 0.86618 0.91435 1.21511 0.98319 1.16513 1.26952 0.92571 1.25805 1.03656 0.94401 0.93338 1.70780 1.15950 1.40865 1.24761 0.83614 0.74560 0.76538 0.76248 1.20456 1.21094 1.21289 1.20099 0.92607 0.93784 0.95657 1.20774 0.97557 0.93883 0.97422 1.20980 0.99672 0.99560 0.94858 1.20832 0.98118 0.98913 0.98476 1.20893 0.99528 0.95911 0.98289 1.20980 0.99557 0.99228 0.94734 1.26222 0.99438 0.90394 0.93032 1.75026 1.17680 1.11152 1.09843 1.78634 1.11462 1.15068 1.01445 1.78783 1.19167 0.92179 1.18247 1.47818 1.39372 1.08655 1.11704 1.22414 1.02833 0.75408 1.05230 1.23454 1.01089 1.04099 0.90433 1.23562 0.91225 1.04132 1.01015 0.91040 0.89972 0.91947 0.74695 0.91352 0.87056 0.87430 0.87501 0.87348 0.87214 0.82121 0.86545 0.86305 0.86049 0.87322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.47 37.16 0.35 -1.59 16 2 C 0.23 3.30 2.94 -69.08 -0.20 3.10 16 3 H 0.11 1.43 6.66 -51.93 -0.35 1.08 16 4 N -0.72 -12.78 4.97 -54.93 -0.27 -13.05 16 5 C 0.54 11.19 7.01 -10.99 -0.08 11.11 16 6 O -0.56 -12.20 15.12 5.56 0.08 -12.12 16 7 C 0.05 1.06 1.92 -94.07 -0.18 0.88 16 8 H 0.07 1.61 6.82 -51.93 -0.35 1.26 16 9 C -0.60 -14.86 7.43 -34.44 -0.26 -15.11 16 10 H 0.06 1.43 7.82 -52.49 -0.41 1.02 16 11 C 0.04 0.93 5.45 -17.82 -0.10 0.84 16 12 N -0.89 -24.58 13.56 55.43 0.75 -23.83 16 13 Si 1.06 23.84 29.91 -169.99 -5.08 18.75 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 17 C -0.02 -0.46 4.02 -104.63 -0.42 -0.88 16 18 C -0.08 -1.71 8.36 -39.59 -0.33 -2.04 16 19 C -0.13 -2.53 10.05 -39.59 -0.40 -2.93 16 20 C -0.15 -2.61 10.05 -39.59 -0.40 -3.00 16 21 C -0.13 -2.38 10.05 -39.59 -0.40 -2.78 16 22 C -0.13 -2.65 9.24 -39.58 -0.37 -3.02 16 23 C 0.19 2.77 6.92 -155.43 -1.07 1.69 16 24 N -0.29 -4.94 12.08 32.70 0.40 -4.54 16 25 N -0.07 -1.25 13.43 60.35 0.81 -0.44 16 26 N -0.10 -1.47 12.69 60.35 0.77 -0.71 16 27 N -0.27 -3.55 3.67 -51.81 -0.19 -3.74 16 28 C 0.04 0.38 6.43 -67.93 -0.44 -0.06 16 29 C -0.15 -0.96 10.16 -26.70 -0.27 -1.23 16 30 C -0.16 -1.17 10.46 -26.70 -0.28 -1.45 16 31 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.42 7.78 8.26 -40.82 -0.34 7.44 16 35 H 0.27 7.47 6.29 -40.82 -0.26 7.21 16 36 H 0.11 2.47 7.86 -52.49 -0.41 2.06 16 37 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 38 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 39 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 40 H 0.11 2.17 7.96 -52.49 -0.42 1.75 16 41 H 0.16 1.00 7.60 -51.93 -0.39 0.61 16 42 H 0.12 0.86 7.85 -51.93 -0.41 0.45 16 43 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 386.83 15.07 5.83 5.83 Total: -1.00 -31.50 386.83 -7.68 -39.18 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -5.94 Total: 11.13 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -4.83 Total: -16.47 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 2.26 Total: -46.31 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.08 Total: -12.12 kcal Atomic # 14 Polarization: 23.84 SS G_CDS: -5.08 Total: 18.75 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.50 -7.68 -39.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361858117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.355 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds