Wall clock time and date at job start Wed Apr 1 2020 00:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46795 * 2 1 4 4 N 1.46496 * 109.47012 * 120.00664 * 2 1 3 5 5 C 1.34783 * 119.99639 * 274.99471 * 4 2 1 6 6 O 1.21281 * 120.00007 * 0.02562 * 5 4 2 7 7 C 1.50693 * 120.00138 * 180.02562 * 5 4 2 8 8 H 1.09006 * 109.47207 * 300.00421 * 7 5 4 9 9 C 1.50706 * 109.46996 * 59.99882 * 7 5 4 10 10 H 1.07996 * 119.99377 * 26.77793 * 9 7 5 11 11 C 1.37877 * 120.00100 * 206.76309 * 9 7 5 12 12 N 1.31511 * 120.00102 * 353.18205 * 11 9 7 13 13 Si 1.86800 * 119.99802 * 173.44655 * 11 9 7 14 14 H 1.48500 * 109.46897 * 179.73219 * 13 11 9 15 15 H 1.48503 * 109.47422 * 299.73260 * 13 11 9 16 16 H 1.48503 * 109.47033 * 59.73164 * 13 11 9 17 17 C 1.50702 * 109.47407 * 180.02562 * 7 5 4 18 18 C 1.38230 * 120.00035 * 292.99342 * 17 7 5 19 19 C 1.38227 * 120.00096 * 179.78763 * 18 17 7 20 20 C 1.38237 * 120.00033 * 0.43760 * 19 18 17 21 21 C 1.38229 * 119.99662 * 359.81517 * 20 19 18 22 22 C 1.38234 * 119.99707 * 113.26131 * 17 7 5 23 23 C 1.50706 * 109.46933 * 240.00320 * 2 1 3 24 24 N 1.31076 * 126.65663 * 284.68833 * 23 2 1 25 25 N 1.28839 * 107.98443 * 179.89957 * 24 23 2 26 26 N 1.28732 * 109.40128 * 0.36831 * 25 24 23 27 27 N 1.29021 * 108.81016 * 359.77349 * 26 25 24 28 28 C 1.46498 * 126.44132 * 179.97438 * 27 26 25 29 29 C 1.52998 * 117.49827 * 8.76812 * 28 27 26 30 30 C 1.52997 * 117.49737 * 300.11075 * 28 27 26 31 31 H 1.09007 * 109.47349 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47516 * 299.99852 * 1 2 3 33 33 H 1.09005 * 109.47537 * 60.00041 * 1 2 3 34 34 H 0.96996 * 120.00481 * 94.99939 * 4 2 1 35 35 H 0.97006 * 120.00141 * 354.82817 * 12 11 9 36 36 H 1.07999 * 119.99939 * 359.97438 * 18 17 7 37 37 H 1.08004 * 120.00332 * 180.27357 * 19 18 17 38 38 H 1.08003 * 120.00141 * 179.83624 * 20 19 18 39 39 H 1.08007 * 119.99707 * 179.97438 * 21 20 19 40 40 H 1.07993 * 120.00396 * 359.97438 * 22 17 7 41 41 H 1.08993 * 115.55291 * 154.44086 * 28 27 26 42 42 H 1.09004 * 117.50257 * 0.02562 * 29 28 27 43 43 H 1.08996 * 117.49730 * 145.02005 * 29 28 27 44 44 H 1.09004 * 117.50227 * 214.98113 * 30 28 27 45 45 H 1.09006 * 117.50059 * 359.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8583 1.1583 2.4117 7 6 2.6499 -0.7287 3.5874 8 1 1.9777 -1.5510 3.8324 9 6 4.0316 -1.2704 3.3252 10 1 4.6694 -0.7927 2.5963 11 6 4.4812 -2.3757 4.0160 12 7 3.7614 -2.8762 4.9962 13 14 6.1165 -3.1577 3.5644 14 1 6.3725 -4.3186 4.4544 15 1 6.0728 -3.6164 2.1527 16 1 7.2041 -2.1598 3.7272 17 6 2.7000 0.2395 4.7412 18 6 3.5978 1.2904 4.7232 19 6 3.6407 2.1809 5.7795 20 6 2.7920 2.0153 6.8581 21 6 1.8978 0.9614 6.8785 22 6 1.8519 0.0733 5.8201 23 6 2.0323 -0.7104 -1.2306 24 7 2.0417 -2.0046 -1.4380 25 7 2.5452 -2.2168 -2.6048 26 7 2.8643 -1.0922 -3.1438 27 7 2.5636 -0.1394 -2.3275 28 6 2.7634 1.2944 -2.5520 29 6 3.1950 1.7369 -3.9516 30 6 4.1945 1.7790 -2.7930 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.2490 -1.6319 1.1525 35 1 2.9519 -2.4250 5.2829 36 1 4.2636 1.4174 3.8825 37 1 4.3391 3.0046 5.7635 38 1 2.8274 2.7096 7.6847 39 1 1.2351 0.8317 7.7213 40 1 1.1532 -0.7500 5.8360 41 1 2.0949 1.9545 -1.9994 42 1 3.3299 0.9612 -4.7055 43 1 2.8107 2.6882 -4.3195 44 1 4.4674 2.7581 -2.3992 45 1 4.9874 1.0311 -2.7841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361858117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:48 Heat of formation + Delta-G solvation = 109.386709 kcal Electronic energy + Delta-G solvation = -29687.305734 eV Core-core repulsion = 25707.429505 eV Total energy + Delta-G solvation = -3979.876230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.42193 -41.13268 -39.58043 -38.92711 -37.03463 -35.87911 -34.82071 -33.46056 -32.66866 -31.61933 -31.25145 -28.82850 -26.54138 -26.07030 -25.55468 -23.76957 -23.42494 -23.22988 -22.49503 -21.96738 -21.18998 -19.46520 -18.84351 -18.33655 -18.00377 -17.52010 -17.24075 -16.39242 -16.22026 -15.93868 -15.69455 -15.50349 -15.38197 -14.88111 -14.56007 -14.47642 -14.32421 -14.05657 -13.88172 -13.85780 -13.51462 -13.31209 -13.25645 -13.14651 -12.88634 -12.76799 -12.64018 -12.62460 -12.25394 -12.01471 -11.92295 -11.78241 -11.77210 -11.61027 -11.04640 -10.92637 -10.68144 -10.59993 -10.23106 -9.63353 -9.33250 -8.62836 -6.40018 -0.06251 0.66464 0.69963 0.75919 0.95113 1.51592 1.57010 1.74741 1.76050 2.18842 2.46205 2.52743 2.57984 3.07460 3.09434 3.20142 3.37770 3.57989 3.65184 3.86915 3.97394 4.11033 4.13664 4.23544 4.26828 4.32973 4.38289 4.41008 4.56612 4.59473 4.63330 4.67684 4.71097 4.85801 4.86874 4.92327 5.01734 5.06333 5.12494 5.26618 5.33941 5.38097 5.69791 5.73445 5.74601 6.05154 6.13768 6.32390 6.45442 6.56737 7.27115 7.36174 7.37382 8.75622 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.003826 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.055122 B = 7317.339366 C = 8468.539174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.234 3.766 3 H 0.118 0.882 4 N -0.715 5.715 5 C 0.545 3.455 6 O -0.572 6.572 7 C 0.044 3.956 8 H 0.048 0.952 9 C -0.588 4.588 10 H 0.046 0.954 11 C -0.006 4.006 12 N -0.919 5.919 13 Si 1.100 2.900 14 H -0.283 1.283 15 H -0.276 1.276 16 H -0.275 1.275 17 C -0.045 4.045 18 C -0.104 4.104 19 C -0.133 4.133 20 C -0.140 4.140 21 C -0.127 4.127 22 C -0.149 4.149 23 C 0.184 3.816 24 N -0.315 5.315 25 N -0.104 5.104 26 N -0.096 5.096 27 N -0.260 5.260 28 C 0.011 3.989 29 C -0.131 4.131 30 C -0.161 4.161 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.410 0.590 35 H 0.268 0.732 36 H 0.096 0.904 37 H 0.138 0.862 38 H 0.149 0.851 39 H 0.141 0.859 40 H 0.108 0.892 41 H 0.188 0.812 42 H 0.104 0.896 43 H 0.155 0.845 44 H 0.146 0.854 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.717 13.418 -11.435 18.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.126 3.874 3 H 0.136 0.864 4 N -0.367 5.367 5 C 0.334 3.666 6 O -0.451 6.451 7 C 0.022 3.978 8 H 0.066 0.934 9 C -0.626 4.626 10 H 0.064 0.936 11 C -0.208 4.208 12 N -0.555 5.555 13 Si 0.923 3.077 14 H -0.209 1.209 15 H -0.202 1.202 16 H -0.201 1.201 17 C -0.046 4.046 18 C -0.123 4.123 19 C -0.151 4.151 20 C -0.158 4.158 21 C -0.145 4.145 22 C -0.167 4.167 23 C -0.095 4.095 24 N -0.165 5.165 25 N -0.097 5.097 26 N -0.081 5.081 27 N -0.061 5.061 28 C -0.090 4.090 29 C -0.168 4.168 30 C -0.199 4.199 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.246 0.754 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.155 0.845 38 H 0.166 0.834 39 H 0.159 0.841 40 H 0.126 0.874 41 H 0.205 0.795 42 H 0.122 0.878 43 H 0.172 0.828 44 H 0.164 0.836 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.668 11.780 -11.843 16.915 hybrid contribution -0.881 0.936 0.094 1.289 sum -3.549 12.716 -11.749 17.673 Atomic orbital electron populations 1.22160 0.90916 1.03716 1.04281 1.19299 0.95993 0.95343 0.76774 0.86444 1.45895 1.67803 1.14842 1.08196 1.20936 0.74287 0.86444 0.84918 1.90561 1.51873 1.16809 1.85897 1.18078 0.98072 0.93219 0.88411 0.93432 1.21603 0.99069 1.16060 1.25823 0.93584 1.26822 1.05639 0.95244 0.93087 1.70852 1.16581 1.41706 1.26320 0.83126 0.72216 0.76031 0.76292 1.20860 1.20180 1.20053 1.20094 0.94070 0.94479 0.95960 1.20807 0.97969 0.95090 0.98406 1.21350 1.00122 0.99460 0.94118 1.21314 0.96589 0.98900 0.98961 1.21309 0.99806 0.95140 0.98219 1.21159 0.99914 1.00216 0.95429 1.26122 0.99844 0.89932 0.93565 1.74935 1.18532 1.12783 1.10205 1.78605 1.13001 1.16221 1.01904 1.78688 1.18735 0.92256 1.18462 1.48130 1.37500 1.09971 1.10544 1.23172 1.04592 0.73224 1.07994 1.23592 0.99315 1.05007 0.88913 1.23655 0.89926 1.04534 1.01828 0.91724 0.90705 0.88725 0.75393 0.92143 0.88617 0.84455 0.83373 0.84107 0.87400 0.79456 0.87789 0.82750 0.83576 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.47 71.98 0.68 -2.87 16 2 C 0.23 6.54 2.94 44.25 0.13 6.67 16 3 H 0.12 3.02 6.66 -2.39 -0.02 3.00 16 4 N -0.71 -25.96 4.97 -446.10 -2.22 -28.17 16 5 C 0.55 23.06 7.01 87.65 0.61 23.68 16 6 O -0.57 -24.99 15.12 -3.03 -0.05 -25.03 16 7 C 0.04 2.07 1.92 -13.03 -0.02 2.04 16 8 H 0.05 2.41 6.82 -2.38 -0.02 2.40 16 9 C -0.59 -30.25 7.43 25.60 0.19 -30.06 16 10 H 0.05 2.41 7.82 -2.91 -0.02 2.39 16 11 C -0.01 -0.30 5.45 84.65 0.46 0.16 16 12 N -0.92 -52.30 13.56 21.45 0.29 -52.01 16 13 Si 1.10 48.83 29.91 68.60 2.05 50.88 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 15 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 17 C -0.05 -2.07 4.02 -19.87 -0.08 -2.15 16 18 C -0.10 -4.56 8.36 22.27 0.19 -4.38 16 19 C -0.13 -4.79 10.05 22.27 0.22 -4.56 16 20 C -0.14 -4.56 10.05 22.27 0.22 -4.34 16 21 C -0.13 -4.46 10.05 22.27 0.22 -4.23 16 22 C -0.15 -6.26 9.24 22.27 0.21 -6.06 16 23 C 0.18 5.37 6.92 138.14 0.96 6.32 16 24 N -0.31 -11.00 12.08 -50.45 -0.61 -11.61 16 25 N -0.10 -3.66 13.43 37.01 0.50 -3.16 16 26 N -0.10 -2.84 12.69 37.02 0.47 -2.37 16 27 N -0.26 -6.47 3.67 -317.83 -1.17 -7.64 16 28 C 0.01 0.17 6.43 44.99 0.29 0.46 16 29 C -0.13 -1.26 10.16 30.62 0.31 -0.95 16 30 C -0.16 -2.00 10.46 30.62 0.32 -1.68 16 31 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.41 15.96 8.26 -92.71 -0.77 15.20 16 35 H 0.27 15.17 6.29 -92.70 -0.58 14.58 16 36 H 0.10 4.35 7.86 -2.91 -0.02 4.33 16 37 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 38 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 39 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 40 H 0.11 4.41 7.96 -2.91 -0.02 4.39 16 41 H 0.19 1.71 7.60 -2.39 -0.02 1.69 16 42 H 0.10 1.34 7.85 -2.39 -0.02 1.32 16 43 H 0.15 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.15 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 Total: -1.00 -70.80 386.83 4.63 -66.17 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: 0.45 Total: 34.92 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 4.91 Total: -21.96 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -2.74 Total: -104.98 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.05 Total: -25.03 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 2.05 Total: 50.88 kcal Total: -70.80 4.63 -66.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361858117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.553 kcal (2) G-P(sol) polarization free energy of solvation -70.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds