Wall clock time and date at job start Wed Apr 1 2020 00:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46635 * 2 1 4 4 N 1.46507 * 109.47000 * 240.00656 * 2 1 3 5 5 C 1.34771 * 119.99960 * 84.99718 * 4 2 1 6 6 O 1.21279 * 120.00233 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99911 * 179.97438 * 5 4 2 8 8 H 1.08999 * 109.46658 * 60.00117 * 7 5 4 9 9 C 1.50696 * 109.47258 * 300.00314 * 7 5 4 10 10 H 1.08005 * 120.00325 * 324.87780 * 9 7 5 11 11 C 1.37876 * 120.00158 * 144.88162 * 9 7 5 12 12 N 1.31517 * 120.00229 * 5.18921 * 11 9 7 13 13 Si 1.86800 * 120.00255 * 185.19562 * 11 9 7 14 14 H 1.48508 * 109.46909 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47185 * 119.99430 * 13 11 9 16 16 H 1.48497 * 109.47174 * 239.99916 * 13 11 9 17 17 C 1.50701 * 109.47216 * 180.02562 * 7 5 4 18 18 C 1.38226 * 120.00132 * 66.01280 * 17 7 5 19 19 C 1.38243 * 120.00201 * 179.80806 * 18 17 7 20 20 C 1.38230 * 119.99664 * 0.40375 * 19 18 17 21 21 C 1.38233 * 120.00283 * 359.84993 * 20 19 18 22 22 C 1.38236 * 119.99864 * 359.95885 * 21 20 19 23 23 C 1.50697 * 109.47496 * 120.00376 * 2 1 3 24 24 N 1.31065 * 126.65923 * 75.02252 * 23 2 1 25 25 N 1.28846 * 107.99238 * 179.97438 * 24 23 2 26 26 N 1.28739 * 109.39405 * 0.02562 * 25 24 23 27 27 N 1.29015 * 108.80985 * 359.97438 * 26 25 24 28 28 C 1.46506 * 126.43937 * 179.97438 * 27 26 25 29 29 C 1.52995 * 117.49774 * 8.77715 * 28 27 26 30 30 C 1.52995 * 117.49916 * 300.11692 * 28 27 26 31 31 H 1.08991 * 109.47253 * 299.99451 * 1 2 3 32 32 H 1.08996 * 109.47271 * 60.00180 * 1 2 3 33 33 H 1.09006 * 109.46875 * 179.97438 * 1 2 3 34 34 H 0.96997 * 119.99632 * 264.98999 * 4 2 1 35 35 H 0.96993 * 120.00559 * 180.02562 * 12 11 9 36 36 H 1.08007 * 120.00199 * 0.02562 * 18 17 7 37 37 H 1.08001 * 119.99876 * 180.22902 * 19 18 17 38 38 H 1.07997 * 119.99812 * 179.83683 * 20 19 18 39 39 H 1.07995 * 120.00627 * 179.97438 * 21 20 19 40 40 H 1.08005 * 120.00281 * 179.97438 * 22 21 20 41 41 H 1.09002 * 115.54654 * 154.44501 * 28 27 26 42 42 H 1.09010 * 117.49772 * 359.97438 * 29 28 27 43 43 H 1.08998 * 117.49994 * 145.01972 * 29 28 27 44 44 H 1.08997 * 117.49890 * 214.97907 * 30 28 27 45 45 H 1.09002 * 117.49978 * 359.97409 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0181 -2.3572 6 8 1.8581 1.1586 -2.4117 7 6 2.6498 -0.7282 -3.5876 8 1 1.9776 -1.5505 -3.8326 9 6 4.0314 -1.2699 -3.3256 10 1 4.7181 -0.7186 -2.7003 11 6 4.4191 -2.4694 -3.8842 12 7 3.6225 -3.0904 -4.7265 13 14 6.0755 -3.2126 -3.4445 14 1 6.7770 -2.3243 -2.4831 15 1 5.8708 -4.5476 -2.8270 16 1 6.8956 -3.3563 -4.6740 17 6 2.7010 0.2403 -4.7410 18 6 3.5851 1.3025 -4.7129 19 6 3.6348 2.1887 -5.7728 20 6 2.7944 2.0174 -6.8568 21 6 1.9065 0.9582 -6.8826 22 6 1.8596 0.0698 -5.8246 23 6 2.0324 -0.7105 1.2304 24 7 2.0371 -2.0042 1.4398 25 7 2.5451 -2.2170 2.6046 26 7 2.8640 -1.0923 3.1439 27 7 2.5637 -0.1396 2.3274 28 6 2.7625 1.2944 2.5525 29 6 3.5696 1.7109 3.7838 30 6 2.0543 1.9259 3.7527 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6316 -1.1528 35 1 3.8950 -3.9344 -5.1192 36 1 4.2396 1.4381 -3.8646 37 1 4.3282 3.0165 -5.7525 38 1 2.8314 2.7113 -7.6836 39 1 1.2497 0.8246 -7.7293 40 1 1.1657 -0.7575 -5.8444 41 1 2.8671 1.9013 1.6532 42 1 3.9522 0.9180 4.4266 43 1 4.2048 2.5922 3.6947 44 1 1.6934 2.9485 3.6432 45 1 1.4401 1.2747 4.3746 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361858120.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:52 Heat of formation + Delta-G solvation = 130.790620 kcal Electronic energy + Delta-G solvation = -29577.494131 eV Core-core repulsion = 25598.546045 eV Total energy + Delta-G solvation = -3978.948086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.22608 -39.39093 -38.19203 -37.93090 -35.57768 -33.78221 -33.69609 -32.03786 -31.13589 -29.96353 -29.93200 -27.28954 -25.47487 -24.84845 -23.92644 -23.08010 -22.28018 -21.62609 -21.28656 -20.52100 -19.41381 -18.11778 -17.02465 -16.89846 -16.63030 -15.95272 -15.75382 -15.51838 -14.76558 -14.43944 -14.32175 -13.94294 -13.89350 -13.65389 -13.39169 -12.94660 -12.76574 -12.49399 -12.45259 -12.38475 -12.21926 -12.12675 -12.01779 -11.71578 -11.64912 -11.54616 -11.19627 -11.05806 -11.03829 -10.99127 -10.52358 -10.42051 -10.29571 -10.09701 -9.99645 -9.45583 -8.87399 -8.71134 -8.65240 -7.97045 -7.64024 -6.29591 -4.36538 1.09427 1.70131 2.22205 2.35443 2.38036 3.06465 3.19424 3.28273 3.30212 3.49611 3.66161 3.74361 3.91895 4.13660 4.26303 4.27768 4.52506 4.79838 4.90784 5.05924 5.07649 5.10454 5.19132 5.32833 5.42027 5.52669 5.57340 5.67310 5.70078 5.76135 5.79529 5.87767 6.05539 6.15874 6.18456 6.26732 6.46406 6.56878 6.81879 6.92463 6.94114 7.14142 7.34775 7.41542 7.59598 7.72896 7.91754 8.02500 8.19593 8.58553 8.66367 9.04288 9.30276 10.78719 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010526 B = 0.003808 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.481120 B = 7350.760306 C = 8717.482572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.231 3.769 3 H 0.104 0.896 4 N -0.720 5.720 5 C 0.534 3.466 6 O -0.565 6.565 7 C 0.053 3.947 8 H 0.092 0.908 9 C -0.518 4.518 10 H 0.062 0.938 11 C 0.077 3.923 12 N -0.874 5.874 13 Si 0.896 3.104 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.281 1.281 17 C -0.008 4.008 18 C -0.086 4.086 19 C -0.135 4.135 20 C -0.149 4.149 21 C -0.131 4.131 22 C -0.117 4.117 23 C 0.189 3.811 24 N -0.288 5.288 25 N -0.073 5.073 26 N -0.100 5.100 27 N -0.275 5.275 28 C 0.046 3.954 29 C -0.153 4.153 30 C -0.162 4.162 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.416 0.584 35 H 0.267 0.733 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.163 0.837 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.246 10.259 10.743 15.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.122 3.878 3 H 0.122 0.878 4 N -0.374 5.374 5 C 0.325 3.675 6 O -0.443 6.443 7 C 0.032 3.968 8 H 0.110 0.890 9 C -0.555 4.555 10 H 0.080 0.920 11 C -0.129 4.129 12 N -0.509 5.509 13 Si 0.723 3.277 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.207 1.207 17 C -0.009 4.009 18 C -0.104 4.104 19 C -0.153 4.153 20 C -0.167 4.167 21 C -0.150 4.150 22 C -0.135 4.135 23 C -0.089 4.089 24 N -0.137 5.137 25 N -0.067 5.067 26 N -0.085 5.085 27 N -0.076 5.076 28 C -0.058 4.058 29 C -0.191 4.191 30 C -0.200 4.200 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.253 0.747 35 H 0.077 0.923 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.131 0.869 41 H 0.180 0.820 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.189 9.706 11.348 15.509 hybrid contribution 1.078 -0.166 -0.281 1.127 sum -3.111 9.540 11.066 14.938 Atomic orbital electron populations 1.22187 0.92712 1.03664 1.03078 1.19080 0.94789 0.95386 0.78543 0.87804 1.46001 1.68608 1.15227 1.07609 1.21808 0.74009 0.86787 0.84910 1.90579 1.51312 1.16784 1.85639 1.18107 0.99498 0.93555 0.85643 0.89019 1.20667 0.97038 1.05546 1.32253 0.92028 1.24938 0.97434 0.96548 0.93939 1.69905 1.36689 1.16710 1.27605 0.86467 0.83447 0.79333 0.78487 1.19671 1.20476 1.20725 1.19985 0.92216 0.93010 0.95738 1.20799 0.98020 0.94178 0.97382 1.20942 0.99814 0.99637 0.94884 1.20795 0.98443 0.98983 0.98462 1.20905 0.99644 0.96015 0.98397 1.20993 0.99472 0.98712 0.94331 1.26263 0.99112 0.90392 0.93151 1.75027 1.17638 1.11203 1.09867 1.78635 1.11413 1.15076 1.01562 1.78779 1.19180 0.92182 1.18378 1.47811 1.39343 1.08607 1.11843 1.22432 1.10566 0.75249 0.97507 1.23453 0.94631 1.04195 0.96838 1.23547 0.95993 1.02817 0.97683 0.92021 0.89943 0.91105 0.74698 0.92282 0.87246 0.87658 0.87742 0.87551 0.86949 0.82022 0.86531 0.86257 0.86135 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.47 37.16 0.35 -1.61 16 2 C 0.23 3.32 2.96 -69.08 -0.20 3.12 16 3 H 0.10 1.41 6.42 -51.93 -0.33 1.07 16 4 N -0.72 -12.83 4.97 -54.93 -0.27 -13.10 16 5 C 0.53 11.03 7.01 -10.99 -0.08 10.95 16 6 O -0.56 -12.24 15.08 5.56 0.08 -12.15 16 7 C 0.05 1.22 2.38 -94.08 -0.22 0.99 16 8 H 0.09 2.24 7.13 -51.93 -0.37 1.87 16 9 C -0.52 -12.77 7.46 -34.44 -0.26 -13.03 16 10 H 0.06 1.55 7.82 -52.48 -0.41 1.14 16 11 C 0.08 1.95 5.45 -17.82 -0.10 1.86 16 12 N -0.87 -23.00 12.84 55.43 0.71 -22.29 16 13 Si 0.90 20.33 29.54 -169.99 -5.02 15.30 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 C -0.01 -0.19 4.30 -104.63 -0.45 -0.64 16 18 C -0.09 -1.85 8.31 -39.58 -0.33 -2.18 16 19 C -0.13 -2.57 10.05 -39.58 -0.40 -2.96 16 20 C -0.15 -2.68 10.05 -39.59 -0.40 -3.08 16 21 C -0.13 -2.47 10.05 -39.58 -0.40 -2.87 16 22 C -0.12 -2.48 9.67 -39.58 -0.38 -2.86 16 23 C 0.19 2.81 6.91 -155.44 -1.07 1.73 16 24 N -0.29 -4.98 12.09 32.70 0.40 -4.58 16 25 N -0.07 -1.28 13.43 60.35 0.81 -0.47 16 26 N -0.10 -1.51 12.69 60.35 0.77 -0.74 16 27 N -0.28 -3.58 3.67 -51.81 -0.19 -3.78 16 28 C 0.05 0.40 6.59 -67.93 -0.45 -0.05 16 29 C -0.15 -1.01 10.16 -26.70 -0.27 -1.28 16 30 C -0.16 -0.97 10.46 -26.70 -0.28 -1.25 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.42 7.81 8.26 -40.82 -0.34 7.47 16 35 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 36 H 0.11 2.38 7.89 -52.48 -0.41 1.97 16 37 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.11 2.30 7.96 -52.48 -0.42 1.89 16 41 H 0.16 1.17 7.23 -51.93 -0.38 0.79 16 42 H 0.12 0.91 7.85 -51.92 -0.41 0.50 16 43 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 388.78 15.07 5.86 5.86 Total: -1.00 -30.45 388.78 -7.80 -38.25 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -6.01 Total: 10.86 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -4.93 Total: -13.16 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 2.22 Total: -44.96 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.45 -7.80 -38.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361858120.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.040 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds