Wall clock time and date at job start Wed Apr 1 2020 00:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46635 * 2 1 4 4 N 1.46507 * 109.47000 * 240.00656 * 2 1 3 5 5 C 1.34771 * 119.99960 * 84.99718 * 4 2 1 6 6 O 1.21279 * 120.00233 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99911 * 179.97438 * 5 4 2 8 8 H 1.08999 * 109.46658 * 60.00117 * 7 5 4 9 9 C 1.50696 * 109.47258 * 300.00314 * 7 5 4 10 10 H 1.08005 * 120.00325 * 324.87780 * 9 7 5 11 11 C 1.37876 * 120.00158 * 144.88162 * 9 7 5 12 12 N 1.31517 * 120.00229 * 5.18921 * 11 9 7 13 13 Si 1.86800 * 120.00255 * 185.19562 * 11 9 7 14 14 H 1.48508 * 109.46909 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47185 * 119.99430 * 13 11 9 16 16 H 1.48497 * 109.47174 * 239.99916 * 13 11 9 17 17 C 1.50701 * 109.47216 * 180.02562 * 7 5 4 18 18 C 1.38226 * 120.00132 * 66.01280 * 17 7 5 19 19 C 1.38243 * 120.00201 * 179.80806 * 18 17 7 20 20 C 1.38230 * 119.99664 * 0.40375 * 19 18 17 21 21 C 1.38233 * 120.00283 * 359.84993 * 20 19 18 22 22 C 1.38236 * 119.99864 * 359.95885 * 21 20 19 23 23 C 1.50697 * 109.47496 * 120.00376 * 2 1 3 24 24 N 1.31065 * 126.65923 * 75.02252 * 23 2 1 25 25 N 1.28846 * 107.99238 * 179.97438 * 24 23 2 26 26 N 1.28739 * 109.39405 * 0.02562 * 25 24 23 27 27 N 1.29015 * 108.80985 * 359.97438 * 26 25 24 28 28 C 1.46506 * 126.43937 * 179.97438 * 27 26 25 29 29 C 1.52995 * 117.49774 * 8.77715 * 28 27 26 30 30 C 1.52995 * 117.49916 * 300.11692 * 28 27 26 31 31 H 1.08991 * 109.47253 * 299.99451 * 1 2 3 32 32 H 1.08996 * 109.47271 * 60.00180 * 1 2 3 33 33 H 1.09006 * 109.46875 * 179.97438 * 1 2 3 34 34 H 0.96997 * 119.99632 * 264.98999 * 4 2 1 35 35 H 0.96993 * 120.00559 * 180.02562 * 12 11 9 36 36 H 1.08007 * 120.00199 * 0.02562 * 18 17 7 37 37 H 1.08001 * 119.99876 * 180.22902 * 19 18 17 38 38 H 1.07997 * 119.99812 * 179.83683 * 20 19 18 39 39 H 1.07995 * 120.00627 * 179.97438 * 21 20 19 40 40 H 1.08005 * 120.00281 * 179.97438 * 22 21 20 41 41 H 1.09002 * 115.54654 * 154.44501 * 28 27 26 42 42 H 1.09010 * 117.49772 * 359.97438 * 29 28 27 43 43 H 1.08998 * 117.49994 * 145.01972 * 29 28 27 44 44 H 1.08997 * 117.49890 * 214.97907 * 30 28 27 45 45 H 1.09002 * 117.49978 * 359.97409 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0181 -2.3572 6 8 1.8581 1.1586 -2.4117 7 6 2.6498 -0.7282 -3.5876 8 1 1.9776 -1.5505 -3.8326 9 6 4.0314 -1.2699 -3.3256 10 1 4.7181 -0.7186 -2.7003 11 6 4.4191 -2.4694 -3.8842 12 7 3.6225 -3.0904 -4.7265 13 14 6.0755 -3.2126 -3.4445 14 1 6.7770 -2.3243 -2.4831 15 1 5.8708 -4.5476 -2.8270 16 1 6.8956 -3.3563 -4.6740 17 6 2.7010 0.2403 -4.7410 18 6 3.5851 1.3025 -4.7129 19 6 3.6348 2.1887 -5.7728 20 6 2.7944 2.0174 -6.8568 21 6 1.9065 0.9582 -6.8826 22 6 1.8596 0.0698 -5.8246 23 6 2.0324 -0.7105 1.2304 24 7 2.0371 -2.0042 1.4398 25 7 2.5451 -2.2170 2.6046 26 7 2.8640 -1.0923 3.1439 27 7 2.5637 -0.1396 2.3274 28 6 2.7625 1.2944 2.5525 29 6 3.5696 1.7109 3.7838 30 6 2.0543 1.9259 3.7527 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6316 -1.1528 35 1 3.8950 -3.9344 -5.1192 36 1 4.2396 1.4381 -3.8646 37 1 4.3282 3.0165 -5.7525 38 1 2.8314 2.7113 -7.6836 39 1 1.2497 0.8246 -7.7293 40 1 1.1657 -0.7575 -5.8444 41 1 2.8671 1.9013 1.6532 42 1 3.9522 0.9180 4.4266 43 1 4.2048 2.5922 3.6947 44 1 1.6934 2.9485 3.6432 45 1 1.4401 1.2747 4.3746 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361858120.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:51 Heat of formation + Delta-G solvation = 113.016602 kcal Electronic energy + Delta-G solvation = -29578.264871 eV Core-core repulsion = 25598.546045 eV Total energy + Delta-G solvation = -3979.718826 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.38975 -40.98247 -39.45123 -38.89831 -36.94531 -35.53312 -34.78686 -33.40445 -32.84818 -31.49991 -31.17687 -28.95559 -26.51225 -26.13884 -25.59750 -23.74844 -23.34160 -23.15969 -22.42389 -21.86239 -20.96364 -19.12499 -18.66614 -18.14468 -18.06619 -17.57106 -17.14952 -16.46112 -16.17346 -15.96253 -15.75621 -15.42820 -15.29370 -14.66849 -14.56980 -14.43532 -14.13992 -13.97004 -13.88802 -13.52258 -13.40210 -13.33189 -13.24685 -13.08904 -12.89821 -12.78689 -12.75061 -12.58582 -12.22832 -12.21244 -11.92703 -11.74469 -11.66915 -11.56328 -11.27172 -11.01310 -10.71063 -10.48733 -10.13535 -9.52116 -9.23528 -8.24213 -6.34636 -0.02144 0.73810 0.79580 0.84528 0.98209 1.36311 1.40821 1.48199 1.86569 2.29766 2.38917 2.47222 2.62442 3.06546 3.11738 3.28491 3.41744 3.58520 3.70255 3.93907 4.03538 4.15607 4.25571 4.33469 4.37000 4.38902 4.49260 4.56764 4.61775 4.62983 4.68690 4.77663 4.89621 4.90555 5.00404 5.05206 5.10746 5.12354 5.16530 5.38891 5.46314 5.48981 5.62961 5.82349 5.85375 5.94208 6.25026 6.42111 6.59260 6.72329 7.32211 7.37343 7.42823 8.83999 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010526 B = 0.003808 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.481120 B = 7350.760306 C = 8717.482572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.234 3.766 3 H 0.118 0.882 4 N -0.716 5.716 5 C 0.539 3.461 6 O -0.575 6.575 7 C 0.053 3.947 8 H 0.067 0.933 9 C -0.515 4.515 10 H 0.052 0.948 11 C 0.038 3.962 12 N -0.901 5.901 13 Si 0.945 3.055 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.280 1.280 17 C -0.035 4.035 18 C -0.109 4.109 19 C -0.134 4.134 20 C -0.143 4.143 21 C -0.130 4.130 22 C -0.141 4.141 23 C 0.185 3.815 24 N -0.315 5.315 25 N -0.105 5.105 26 N -0.097 5.097 27 N -0.260 5.260 28 C 0.007 3.993 29 C -0.146 4.146 30 C -0.138 4.138 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.410 0.590 35 H 0.267 0.733 36 H 0.097 0.903 37 H 0.136 0.864 38 H 0.146 0.854 39 H 0.138 0.862 40 H 0.106 0.894 41 H 0.178 0.822 42 H 0.102 0.898 43 H 0.146 0.854 44 H 0.153 0.847 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.139 13.047 10.838 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.126 3.874 3 H 0.135 0.865 4 N -0.369 5.369 5 C 0.329 3.671 6 O -0.455 6.455 7 C 0.031 3.969 8 H 0.085 0.915 9 C -0.552 4.552 10 H 0.070 0.930 11 C -0.165 4.165 12 N -0.538 5.538 13 Si 0.771 3.229 14 H -0.197 1.197 15 H -0.204 1.204 16 H -0.206 1.206 17 C -0.036 4.036 18 C -0.127 4.127 19 C -0.152 4.152 20 C -0.161 4.161 21 C -0.148 4.148 22 C -0.159 4.159 23 C -0.094 4.094 24 N -0.165 5.165 25 N -0.098 5.098 26 N -0.083 5.083 27 N -0.061 5.061 28 C -0.094 4.094 29 C -0.184 4.184 30 C -0.177 4.177 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.246 0.754 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.154 0.846 38 H 0.163 0.837 39 H 0.156 0.844 40 H 0.124 0.876 41 H 0.195 0.805 42 H 0.120 0.880 43 H 0.164 0.836 44 H 0.171 0.829 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.086 12.509 11.478 17.462 hybrid contribution 1.033 -0.897 -0.270 1.394 sum -3.053 11.612 11.208 16.425 Atomic orbital electron populations 1.22133 0.91016 1.03583 1.04172 1.19294 0.95985 0.95286 0.76839 0.86478 1.45927 1.67883 1.14868 1.08199 1.21294 0.74199 0.86486 0.85127 1.90552 1.52066 1.16944 1.85933 1.17993 0.98094 0.93400 0.87375 0.91509 1.20749 0.97692 1.05371 1.31433 0.93011 1.25498 0.99825 0.97064 0.94097 1.69994 1.37956 1.17067 1.28755 0.85697 0.80567 0.78530 0.78065 1.19689 1.20419 1.20613 1.20029 0.93674 0.93817 0.96047 1.20838 0.98356 0.95145 0.98368 1.21316 1.00173 0.99577 0.94129 1.21266 0.96924 0.98923 0.99001 1.21290 0.99921 0.95286 0.98285 1.21133 0.99892 0.99671 0.95224 1.26157 0.99530 0.89931 0.93733 1.74935 1.18490 1.12840 1.10232 1.78604 1.12993 1.16228 1.02022 1.78684 1.18764 0.92244 1.18615 1.48120 1.37391 1.09922 1.10692 1.23106 1.13827 0.73001 0.99484 1.23590 0.95623 1.04494 0.94672 1.23683 0.95467 1.03772 0.94741 0.88966 0.90672 0.91817 0.75410 0.92370 0.88476 0.84625 0.83670 0.84432 0.87611 0.80501 0.87997 0.83559 0.82945 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.47 71.98 0.68 -2.93 16 2 C 0.23 6.63 2.96 44.24 0.13 6.76 16 3 H 0.12 3.02 6.42 -2.38 -0.02 3.01 16 4 N -0.72 -26.15 4.97 -446.08 -2.22 -28.37 16 5 C 0.54 22.83 7.01 87.66 0.61 23.45 16 6 O -0.57 -25.09 15.08 -3.03 -0.05 -25.13 16 7 C 0.05 2.51 2.38 -13.03 -0.03 2.48 16 8 H 0.07 3.47 7.13 -2.39 -0.02 3.45 16 9 C -0.51 -26.21 7.46 25.60 0.19 -26.02 16 10 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16 11 C 0.04 1.96 5.45 84.65 0.46 2.42 16 12 N -0.90 -48.89 12.84 21.45 0.28 -48.62 16 13 Si 0.95 42.47 29.54 68.60 2.03 44.49 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 17 C -0.03 -1.60 4.30 -19.87 -0.09 -1.69 16 18 C -0.11 -4.71 8.31 22.27 0.18 -4.52 16 19 C -0.13 -4.82 10.05 22.27 0.22 -4.59 16 20 C -0.14 -4.70 10.05 22.27 0.22 -4.48 16 21 C -0.13 -4.62 10.05 22.27 0.22 -4.40 16 22 C -0.14 -6.03 9.67 22.27 0.22 -5.82 16 23 C 0.19 5.46 6.91 138.13 0.95 6.42 16 24 N -0.32 -11.13 12.09 -50.46 -0.61 -11.74 16 25 N -0.11 -3.74 13.43 37.01 0.50 -3.24 16 26 N -0.10 -2.93 12.69 37.02 0.47 -2.46 16 27 N -0.26 -6.57 3.67 -317.83 -1.17 -7.73 16 28 C 0.01 0.11 6.59 44.99 0.30 0.41 16 29 C -0.15 -1.56 10.16 30.62 0.31 -1.25 16 30 C -0.14 -1.25 10.46 30.62 0.32 -0.93 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.41 16.08 8.26 -92.71 -0.77 15.31 16 35 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 36 H 0.10 4.31 7.89 -2.91 -0.02 4.29 16 37 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 38 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 39 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 40 H 0.11 4.51 7.96 -2.91 -0.02 4.49 16 41 H 0.18 2.12 7.23 -2.39 -0.02 2.10 16 42 H 0.10 1.44 7.85 -2.38 -0.02 1.42 16 43 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.15 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -68.06 388.78 4.41 -63.66 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.26 Total: 33.82 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 4.92 Total: -14.69 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -2.75 Total: -102.16 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.05 Total: -25.13 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -68.06 4.41 -63.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361858120.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.675 kcal (2) G-P(sol) polarization free energy of solvation -68.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds