Wall clock time and date at job start Wed Apr 1 2020 00:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.46605 * 2 1 4 4 N 1.40085 * 126.04022 * 270.15301 * 3 2 1 5 5 C 1.30835 * 108.20752 * 180.23804 * 4 3 2 6 6 C 1.50700 * 125.89801 * 179.81636 * 5 4 3 7 7 C 1.39868 * 108.20427 * 359.78294 * 5 4 3 8 8 C 1.50692 * 126.04276 * 180.02562 * 7 5 4 9 9 N 1.46501 * 109.47484 * 269.97345 * 8 7 5 10 10 S 1.65592 * 120.00217 * 164.99878 * 9 8 7 11 11 O 1.42111 * 104.27735 * 181.07208 * 10 9 8 12 12 O 1.42093 * 104.27905 * 308.92697 * 10 9 8 13 13 C 1.81393 * 104.45012 * 65.00452 * 10 9 8 14 14 C 1.53007 * 109.47529 * 173.87558 * 13 10 9 15 15 C 1.50696 * 115.54639 * 65.26663 * 14 13 10 16 16 H 1.08000 * 120.00009 * 268.54828 * 15 14 13 17 17 C 1.37875 * 120.00151 * 88.55572 * 15 14 13 18 18 N 1.31517 * 120.00614 * 174.69921 * 17 15 14 19 19 Si 1.86807 * 119.99870 * 354.69425 * 17 15 14 20 20 H 1.48497 * 109.47083 * 92.55367 * 19 17 15 21 21 H 1.48493 * 109.47214 * 212.55592 * 19 17 15 22 22 H 1.48503 * 109.46958 * 332.55824 * 19 17 15 23 23 C 1.53001 * 117.49470 * 279.60205 * 14 13 10 24 24 C 1.52991 * 117.50068 * 210.94169 * 14 13 10 25 25 C 1.34953 * 126.03664 * 90.00824 * 3 2 1 26 26 C 1.50696 * 126.12446 * 0.03006 * 25 3 2 27 27 H 1.08994 * 109.47488 * 59.99548 * 1 2 3 28 28 H 1.08999 * 109.47190 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46849 * 299.99416 * 1 2 3 30 30 H 1.09002 * 109.46502 * 240.00389 * 2 1 3 31 31 H 1.08996 * 109.46981 * 120.00353 * 2 1 3 32 32 H 1.08996 * 109.47122 * 269.95827 * 6 5 4 33 33 H 1.08997 * 109.47404 * 29.96072 * 6 5 4 34 34 H 1.08999 * 109.47200 * 149.95842 * 6 5 4 35 35 H 1.08999 * 109.47100 * 29.97625 * 8 7 5 36 36 H 1.09005 * 109.47483 * 149.97618 * 8 7 5 37 37 H 0.97007 * 119.99504 * 344.99789 * 9 8 7 38 38 H 1.08994 * 109.47290 * 293.87170 * 13 10 9 39 39 H 1.09002 * 109.47511 * 53.87209 * 13 10 9 40 40 H 0.96993 * 120.00086 * 180.02562 * 18 17 15 41 41 H 1.08994 * 117.50088 * 0.02562 * 23 14 13 42 42 H 1.09008 * 117.49535 * 145.01860 * 23 14 13 43 43 H 1.09008 * 117.49836 * 214.97378 * 24 14 13 44 44 H 1.09001 * 117.50047 * 359.97438 * 24 14 13 45 45 H 1.08996 * 109.47167 * 269.68709 * 26 25 3 46 46 H 1.08999 * 109.47092 * 149.69312 * 26 25 3 47 47 H 1.08992 * 109.47323 * 29.68892 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2901 2.1593 -1.1327 5 6 2.7110 3.3315 -0.7321 6 6 3.1191 4.4759 -1.6236 7 6 2.7161 3.3394 0.6666 8 6 3.1300 4.4915 1.5453 9 7 4.5643 4.3990 1.8285 10 16 5.3717 5.7048 2.4491 11 8 6.7170 5.2619 2.5660 12 8 5.0258 6.7755 1.5813 13 6 4.6384 5.9525 4.0896 14 6 5.4090 7.0456 4.8330 15 6 5.3222 8.4249 4.2324 16 1 6.0609 8.7486 3.5141 17 6 4.2998 9.2738 4.6000 18 7 4.2817 10.5120 4.1571 19 14 2.9402 8.6652 5.7272 20 1 3.2930 8.9692 7.1373 21 1 1.6666 9.3443 5.3782 22 1 2.7802 7.1980 5.5624 23 6 6.7249 6.6493 5.5055 24 6 5.4874 6.9424 6.3574 25 6 2.2830 2.1297 1.0913 26 6 2.1299 1.6942 2.5258 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 4.1851 4.4056 -1.8401 33 1 2.5554 4.4297 -2.5553 34 1 2.9121 5.4203 -1.1203 35 1 2.9203 5.4314 1.0347 36 1 2.5718 4.4538 2.4808 37 1 5.0411 3.5727 1.6525 38 1 3.5965 6.2531 3.9802 39 1 4.6908 5.0223 4.6553 40 1 3.5626 11.1092 4.4160 41 1 7.0419 5.6101 5.4179 42 1 7.5278 7.3866 5.5139 43 1 5.4767 7.8723 6.9260 44 1 4.9897 6.0960 6.8309 45 1 1.1258 1.9363 2.8738 46 1 2.8633 2.2129 3.1432 47 1 2.2900 0.6185 2.5980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363929267.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:23 Heat of formation + Delta-G solvation = 21.466085 kcal Electronic energy + Delta-G solvation = -28555.206872 eV Core-core repulsion = 24674.669318 eV Total energy + Delta-G solvation = -3880.537554 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.57322 -37.11755 -36.34030 -35.80666 -35.09758 -34.61948 -32.46361 -32.14935 -30.85359 -28.49210 -28.15956 -27.35463 -25.51332 -25.05283 -22.99889 -21.70926 -19.96861 -19.57611 -19.52250 -18.61728 -17.20327 -16.79403 -16.55243 -15.81049 -15.49347 -15.27309 -15.04099 -14.80706 -14.45754 -14.12215 -13.84859 -13.65562 -13.44984 -13.35134 -13.14486 -12.96515 -12.89390 -12.63403 -12.49058 -12.31185 -12.26343 -12.05916 -11.89309 -11.66025 -11.39481 -11.31123 -11.18205 -11.14604 -10.91905 -10.64390 -10.56749 -10.36082 -10.08723 -9.73054 -9.21643 -9.17682 -9.14757 -8.65290 -8.52378 -8.42036 -6.15495 -4.22879 0.96965 1.67849 2.26799 2.55603 3.22696 3.32277 3.34038 3.56324 4.16083 4.35760 4.37615 4.46132 4.56987 4.66389 4.72134 4.82066 4.85209 4.92357 5.03064 5.10180 5.11087 5.20454 5.21846 5.30150 5.39906 5.44221 5.52405 5.62255 5.66296 5.71593 5.76330 5.92177 5.95572 6.03651 6.04769 6.06328 6.18231 6.21646 6.43385 6.60591 6.66756 6.86422 6.89309 7.07141 7.29026 7.61016 7.62917 8.38486 8.90305 9.45608 10.96038 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015438 B = 0.003298 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.259956 B = 8486.678865 C = 8663.992649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 N -0.372 5.372 4 N -0.301 5.301 5 C 0.097 3.903 6 C -0.080 4.080 7 C -0.245 4.245 8 C 0.195 3.805 9 N -1.128 6.128 10 S 2.614 3.386 11 O -0.970 6.970 12 O -0.939 6.939 13 C -0.579 4.579 14 C 0.003 3.997 15 C -0.509 4.509 16 H 0.087 0.913 17 C 0.089 3.911 18 N -0.882 5.882 19 Si 0.874 3.126 20 H -0.276 1.276 21 H -0.290 1.290 22 H -0.256 1.256 23 C -0.177 4.177 24 C -0.186 4.186 25 C 0.101 3.899 26 C -0.098 4.098 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.410 0.590 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.267 0.733 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.085 -21.707 -4.170 23.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.008 3.992 3 N -0.154 5.154 4 N -0.122 5.122 5 C -0.070 4.070 6 C -0.138 4.138 7 C -0.257 4.257 8 C 0.068 3.932 9 N -0.885 5.885 10 S 2.709 3.291 11 O -0.961 6.961 12 O -0.929 6.929 13 C -0.710 4.710 14 C 0.000 4.000 15 C -0.546 4.546 16 H 0.105 0.895 17 C -0.116 4.116 18 N -0.518 5.518 19 Si 0.701 3.299 20 H -0.202 1.202 21 H -0.217 1.217 22 H -0.181 1.181 23 C -0.215 4.215 24 C -0.224 4.224 25 C -0.028 4.028 26 C -0.156 4.156 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.242 0.758 38 H 0.144 0.856 39 H 0.125 0.875 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.109 0.891 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.941 -21.750 -5.629 23.829 hybrid contribution -1.055 -0.448 1.801 2.135 sum -8.997 -22.198 -3.828 24.256 Atomic orbital electron populations 1.22186 0.94311 1.02963 1.03337 1.21623 0.95200 0.78105 1.04252 1.48506 1.51784 1.11783 1.03335 1.77339 1.23615 1.03844 1.07429 1.22281 0.97140 0.94096 0.93490 1.20280 1.02027 0.93773 0.97747 1.19631 1.15853 0.96626 0.93615 1.19401 0.80246 0.96510 0.97045 1.56090 1.18512 1.32236 1.81710 1.04946 0.74073 0.72825 0.77255 1.93517 1.33593 1.81134 1.87824 1.93575 1.83809 1.53422 1.62046 1.30319 1.12630 1.06359 1.21684 1.18845 0.95658 0.94110 0.91405 1.20350 1.13579 0.93872 1.26813 0.89505 1.24945 0.97221 0.94275 0.95146 1.69894 1.32672 1.05105 1.44092 0.86931 0.81577 0.80069 0.81330 1.20192 1.21697 1.18064 1.23022 0.92139 1.00713 1.05588 1.22985 1.02888 1.01697 0.94879 1.20887 0.99316 0.91788 0.90767 1.20539 1.04005 1.01958 0.89088 0.91571 0.90577 0.91975 0.88794 0.89060 0.90185 0.90992 0.89574 0.89321 0.91671 0.75779 0.85613 0.87534 0.92299 0.90029 0.88660 0.88953 0.90714 0.89929 0.89127 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 10.24 37.16 0.38 -0.61 16 2 C 0.13 0.88 6.96 -4.04 -0.03 0.85 16 3 N -0.37 -4.02 3.61 -57.14 -0.21 -4.23 16 4 N -0.30 -4.04 12.58 33.67 0.42 -3.61 16 5 C 0.10 1.29 7.22 -82.41 -0.59 0.69 16 6 C -0.08 -0.94 10.26 36.01 0.37 -0.57 16 7 C -0.24 -3.08 5.50 -105.06 -0.58 -3.65 16 8 C 0.19 2.56 6.03 -5.20 -0.03 2.52 16 9 N -1.13 -16.06 5.88 -11.66 -0.07 -16.13 16 10 S 2.61 50.28 5.19 -107.50 -0.56 49.72 16 11 O -0.97 -20.58 18.08 -57.54 -1.04 -21.62 16 12 O -0.94 -21.85 17.16 -57.54 -0.99 -22.84 16 13 C -0.58 -10.94 5.55 37.16 0.21 -10.73 16 14 C 0.00 0.06 0.79 -155.66 -0.12 -0.07 16 15 C -0.51 -14.10 8.77 -34.44 -0.30 -14.40 16 16 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 17 C 0.09 2.50 5.47 -17.82 -0.10 2.40 16 18 N -0.88 -26.54 13.96 55.43 0.77 -25.76 16 19 Si 0.87 20.65 24.96 -169.99 -4.24 16.41 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.26 -5.48 5.68 56.52 0.32 -5.16 16 23 C -0.18 -3.63 9.96 -26.69 -0.27 -3.89 16 24 C -0.19 -3.79 7.67 -26.70 -0.20 -4.00 16 25 C 0.10 1.08 6.93 -82.26 -0.57 0.51 16 26 C -0.10 -0.70 9.73 36.00 0.35 -0.35 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.38 8.14 -51.92 -0.42 -0.05 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.42 7.04 -51.93 -0.37 0.05 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.02 7.25 -51.93 -0.38 0.65 16 35 H 0.09 1.25 6.81 -51.93 -0.35 0.89 16 36 H 0.07 0.72 7.78 -51.93 -0.40 0.32 16 37 H 0.41 5.16 8.61 -34.47 -0.30 4.86 16 38 H 0.13 2.32 6.53 -51.93 -0.34 1.98 16 39 H 0.11 1.59 8.09 -51.92 -0.42 1.17 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.09 1.97 8.14 -51.92 -0.42 1.55 16 43 H 0.09 1.97 7.34 -51.92 -0.38 1.59 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 0.65 7.78 -51.93 -0.40 0.25 16 47 H 0.07 0.37 7.07 -51.93 -0.37 0.01 16 LS Contribution 394.47 15.07 5.94 5.94 Total: -1.00 -36.42 394.47 -9.03 -45.44 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.57 Total: 7.98 kcal Atomic # 6 Polarization: -29.81 SS G_CDS: -1.49 Total: -31.30 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.92 Total: -49.73 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -2.03 Total: -44.46 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.24 Total: 16.41 kcal Atomic # 16 Polarization: 50.28 SS G_CDS: -0.56 Total: 49.72 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.42 -9.03 -45.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363929267.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.909 kcal (2) G-P(sol) polarization free energy of solvation -36.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds