Wall clock time and date at job start Wed Apr 1 2020 00:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.46605 * 2 1 4 4 N 1.40085 * 126.04022 * 270.15301 * 3 2 1 5 5 C 1.30835 * 108.20752 * 180.23804 * 4 3 2 6 6 C 1.50700 * 125.89801 * 179.81636 * 5 4 3 7 7 C 1.39868 * 108.20427 * 359.78294 * 5 4 3 8 8 C 1.50692 * 126.04276 * 180.02562 * 7 5 4 9 9 N 1.46501 * 109.47484 * 269.97345 * 8 7 5 10 10 S 1.65592 * 120.00217 * 164.99878 * 9 8 7 11 11 O 1.42111 * 104.27735 * 181.07208 * 10 9 8 12 12 O 1.42093 * 104.27905 * 308.92697 * 10 9 8 13 13 C 1.81393 * 104.45012 * 65.00452 * 10 9 8 14 14 C 1.53007 * 109.47529 * 173.87558 * 13 10 9 15 15 C 1.50696 * 115.54639 * 65.26663 * 14 13 10 16 16 H 1.08000 * 120.00009 * 268.54828 * 15 14 13 17 17 C 1.37875 * 120.00151 * 88.55572 * 15 14 13 18 18 N 1.31517 * 120.00614 * 174.69921 * 17 15 14 19 19 Si 1.86807 * 119.99870 * 354.69425 * 17 15 14 20 20 H 1.48497 * 109.47083 * 92.55367 * 19 17 15 21 21 H 1.48493 * 109.47214 * 212.55592 * 19 17 15 22 22 H 1.48503 * 109.46958 * 332.55824 * 19 17 15 23 23 C 1.53001 * 117.49470 * 279.60205 * 14 13 10 24 24 C 1.52991 * 117.50068 * 210.94169 * 14 13 10 25 25 C 1.34953 * 126.03664 * 90.00824 * 3 2 1 26 26 C 1.50696 * 126.12446 * 0.03006 * 25 3 2 27 27 H 1.08994 * 109.47488 * 59.99548 * 1 2 3 28 28 H 1.08999 * 109.47190 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46849 * 299.99416 * 1 2 3 30 30 H 1.09002 * 109.46502 * 240.00389 * 2 1 3 31 31 H 1.08996 * 109.46981 * 120.00353 * 2 1 3 32 32 H 1.08996 * 109.47122 * 269.95827 * 6 5 4 33 33 H 1.08997 * 109.47404 * 29.96072 * 6 5 4 34 34 H 1.08999 * 109.47200 * 149.95842 * 6 5 4 35 35 H 1.08999 * 109.47100 * 29.97625 * 8 7 5 36 36 H 1.09005 * 109.47483 * 149.97618 * 8 7 5 37 37 H 0.97007 * 119.99504 * 344.99789 * 9 8 7 38 38 H 1.08994 * 109.47290 * 293.87170 * 13 10 9 39 39 H 1.09002 * 109.47511 * 53.87209 * 13 10 9 40 40 H 0.96993 * 120.00086 * 180.02562 * 18 17 15 41 41 H 1.08994 * 117.50088 * 0.02562 * 23 14 13 42 42 H 1.09008 * 117.49535 * 145.01860 * 23 14 13 43 43 H 1.09008 * 117.49836 * 214.97378 * 24 14 13 44 44 H 1.09001 * 117.50047 * 359.97438 * 24 14 13 45 45 H 1.08996 * 109.47167 * 269.68709 * 26 25 3 46 46 H 1.08999 * 109.47092 * 149.69312 * 26 25 3 47 47 H 1.08992 * 109.47323 * 29.68892 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2901 2.1593 -1.1327 5 6 2.7110 3.3315 -0.7321 6 6 3.1191 4.4759 -1.6236 7 6 2.7161 3.3394 0.6666 8 6 3.1300 4.4915 1.5453 9 7 4.5643 4.3990 1.8285 10 16 5.3717 5.7048 2.4491 11 8 6.7170 5.2619 2.5660 12 8 5.0258 6.7755 1.5813 13 6 4.6384 5.9525 4.0896 14 6 5.4090 7.0456 4.8330 15 6 5.3222 8.4249 4.2324 16 1 6.0609 8.7486 3.5141 17 6 4.2998 9.2738 4.6000 18 7 4.2817 10.5120 4.1571 19 14 2.9402 8.6652 5.7272 20 1 3.2930 8.9692 7.1373 21 1 1.6666 9.3443 5.3782 22 1 2.7802 7.1980 5.5624 23 6 6.7249 6.6493 5.5055 24 6 5.4874 6.9424 6.3574 25 6 2.2830 2.1297 1.0913 26 6 2.1299 1.6942 2.5258 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 4.1851 4.4056 -1.8401 33 1 2.5554 4.4297 -2.5553 34 1 2.9121 5.4203 -1.1203 35 1 2.9203 5.4314 1.0347 36 1 2.5718 4.4538 2.4808 37 1 5.0411 3.5727 1.6525 38 1 3.5965 6.2531 3.9802 39 1 4.6908 5.0223 4.6553 40 1 3.5626 11.1092 4.4160 41 1 7.0419 5.6101 5.4179 42 1 7.5278 7.3866 5.5139 43 1 5.4767 7.8723 6.9260 44 1 4.9897 6.0960 6.8309 45 1 1.1258 1.9363 2.8738 46 1 2.8633 2.2129 3.1432 47 1 2.2900 0.6185 2.5980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363929267.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:22 Heat of formation + Delta-G solvation = -6.564823 kcal Electronic energy + Delta-G solvation = -28556.422383 eV Core-core repulsion = 24674.669318 eV Total energy + Delta-G solvation = -3881.753065 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.40748 -38.80387 -37.93472 -36.85241 -36.62862 -35.48425 -34.25264 -33.17520 -31.67095 -30.03363 -28.99547 -28.10074 -27.56357 -25.92098 -23.65925 -23.30780 -21.35540 -20.80197 -20.31451 -20.14875 -18.57084 -18.44107 -17.66162 -17.06570 -16.85057 -16.73147 -16.33174 -15.73773 -15.47622 -15.30969 -15.22623 -14.78340 -14.55709 -14.42528 -14.25911 -14.04699 -13.88765 -13.83512 -13.51758 -13.23913 -13.17187 -13.06990 -12.97595 -12.89522 -12.82549 -12.67224 -12.61764 -12.43069 -12.33397 -12.12117 -12.00220 -11.70946 -11.64586 -11.47420 -10.92548 -10.68453 -10.48539 -10.04567 -10.01236 -9.37143 -8.27864 -6.41516 -0.51733 0.86308 1.39968 1.41457 1.54507 1.56453 1.58564 2.25305 2.40507 2.94410 3.05449 3.21060 3.44875 3.53158 3.71426 3.84708 4.00162 4.04849 4.10251 4.20986 4.23934 4.30367 4.35856 4.38063 4.42151 4.60081 4.62337 4.66879 4.72422 4.75107 4.78532 4.81782 4.89981 4.96679 5.05819 5.09815 5.11721 5.16395 5.21793 5.25997 5.27530 5.49302 5.66190 5.68907 6.16351 6.22154 6.24153 6.70232 6.75332 7.31299 8.88595 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015438 B = 0.003298 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.259956 B = 8486.678865 C = 8663.992649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.119 3.881 3 N -0.370 5.370 4 N -0.332 5.332 5 C 0.077 3.923 6 C -0.080 4.080 7 C -0.270 4.270 8 C 0.191 3.809 9 N -1.107 6.107 10 S 2.617 3.383 11 O -0.997 6.997 12 O -0.996 6.996 13 C -0.570 4.570 14 C -0.032 4.032 15 C -0.515 4.515 16 H 0.025 0.975 17 C 0.024 3.976 18 N -0.944 5.944 19 Si 0.934 3.066 20 H -0.265 1.265 21 H -0.296 1.296 22 H -0.207 1.207 23 C -0.177 4.177 24 C -0.167 4.167 25 C 0.115 3.885 26 C -0.100 4.100 27 H 0.042 0.958 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.419 0.581 38 H 0.136 0.864 39 H 0.163 0.837 40 H 0.268 0.732 41 H 0.113 0.887 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.122 0.878 45 H 0.099 0.901 46 H 0.097 0.903 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.172 -26.336 -1.097 28.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.001 4.001 3 N -0.152 5.152 4 N -0.155 5.155 5 C -0.089 4.089 6 C -0.139 4.139 7 C -0.283 4.283 8 C 0.065 3.935 9 N -0.868 5.868 10 S 2.714 3.286 11 O -0.988 6.988 12 O -0.985 6.985 13 C -0.703 4.703 14 C -0.034 4.034 15 C -0.552 4.552 16 H 0.044 0.956 17 C -0.175 4.175 18 N -0.582 5.582 19 Si 0.756 3.244 20 H -0.190 1.190 21 H -0.223 1.223 22 H -0.129 1.129 23 C -0.214 4.214 24 C -0.205 4.205 25 C -0.016 4.016 26 C -0.158 4.158 27 H 0.061 0.939 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.141 0.859 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.255 0.745 38 H 0.154 0.846 39 H 0.181 0.819 40 H 0.077 0.923 41 H 0.131 0.869 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.140 0.860 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.992 -26.426 -2.587 28.371 hybrid contribution -0.329 0.946 0.754 1.253 sum -10.321 -25.481 -1.833 27.553 Atomic orbital electron populations 1.22141 0.93490 1.04285 1.02204 1.22033 0.95861 0.76319 1.05868 1.48876 1.50844 1.12747 1.02745 1.77265 1.24654 1.04293 1.09245 1.22465 0.97669 0.94355 0.94374 1.20265 1.01981 0.93487 0.98147 1.19630 1.17961 0.97571 0.93098 1.19550 0.79313 0.96113 0.98534 1.55572 1.19085 1.31071 1.81096 1.04483 0.73764 0.72679 0.77636 1.93467 1.35589 1.81445 1.88270 1.93516 1.84496 1.56301 1.64215 1.30154 1.12039 1.07478 1.20629 1.18762 0.98620 0.92514 0.93516 1.20477 1.12041 0.97111 1.25575 0.95642 1.26001 1.00262 0.94061 0.97176 1.70080 1.34112 1.07137 1.46876 0.85962 0.77115 0.82341 0.78950 1.18966 1.22307 1.12865 1.23103 0.91380 1.01984 1.04909 1.23099 1.02021 1.02781 0.92611 1.21424 0.96960 0.90842 0.92326 1.20753 1.05164 1.03641 0.86267 0.93883 0.88025 0.91852 0.88746 0.85912 0.90494 0.90136 0.90340 0.91311 0.88569 0.74527 0.84605 0.81914 0.92335 0.86854 0.90535 0.90409 0.86017 0.88288 0.88465 0.88677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 10.24 71.98 0.74 -0.70 16 2 C 0.12 1.25 6.96 86.38 0.60 1.85 16 3 N -0.37 -7.16 3.61 -334.69 -1.21 -8.37 16 4 N -0.33 -8.75 12.58 -47.39 -0.60 -9.34 16 5 C 0.08 2.06 7.22 43.10 0.31 2.37 16 6 C -0.08 -2.00 10.26 71.24 0.73 -1.27 16 7 C -0.27 -6.36 5.50 -20.15 -0.11 -6.47 16 8 C 0.19 4.67 6.03 85.63 0.52 5.18 16 9 N -1.11 -29.57 5.88 -190.79 -1.12 -30.69 16 10 S 2.62 99.10 5.19 -56.49 -0.29 98.81 16 11 O -1.00 -41.88 18.08 -127.65 -2.31 -44.19 16 12 O -1.00 -48.53 17.16 -127.65 -2.19 -50.72 16 13 C -0.57 -19.36 5.55 71.98 0.40 -18.96 16 14 C -0.03 -1.37 0.79 -52.93 -0.04 -1.41 16 15 C -0.51 -29.45 8.77 25.60 0.22 -29.22 16 16 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 17 C 0.02 1.36 5.47 84.65 0.46 1.83 16 18 N -0.94 -59.74 13.96 21.45 0.30 -59.44 16 19 Si 0.93 41.07 24.96 68.60 1.71 42.78 16 20 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 21 H -0.30 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.21 -7.40 5.68 99.48 0.57 -6.83 16 23 C -0.18 -6.79 9.96 30.62 0.30 -6.49 16 24 C -0.17 -6.06 7.67 30.62 0.23 -5.83 16 25 C 0.11 2.09 6.93 41.40 0.29 2.37 16 26 C -0.10 -0.92 9.73 71.23 0.69 -0.23 16 27 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.12 0.53 7.04 -2.39 -0.02 0.52 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 2.02 7.25 -2.39 -0.02 2.01 16 35 H 0.07 1.96 6.81 -2.39 -0.02 1.94 16 36 H 0.10 1.74 7.78 -2.38 -0.02 1.73 16 37 H 0.42 9.70 8.61 -96.74 -0.83 8.87 16 38 H 0.14 4.37 6.53 -2.39 -0.02 4.36 16 39 H 0.16 3.69 8.09 -2.39 -0.02 3.67 16 40 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 41 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 42 H 0.08 3.18 8.14 -2.38 -0.02 3.16 16 43 H 0.08 3.07 7.34 -2.38 -0.02 3.05 16 44 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 45 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.10 0.83 7.78 -2.39 -0.02 0.81 16 47 H 0.09 0.43 7.07 -2.39 -0.02 0.42 16 Total: -1.00 -86.69 394.47 -0.36 -87.05 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: 0.00 Total: 31.09 kcal Atomic # 6 Polarization: -62.32 SS G_CDS: 5.35 Total: -56.97 kcal Atomic # 7 Polarization: -105.21 SS G_CDS: -2.63 Total: -107.84 kcal Atomic # 8 Polarization: -90.41 SS G_CDS: -4.50 Total: -94.91 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 1.71 Total: 42.78 kcal Atomic # 16 Polarization: 99.10 SS G_CDS: -0.29 Total: 98.81 kcal Total: -86.69 -0.36 -87.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363929267.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.483 kcal (2) G-P(sol) polarization free energy of solvation -86.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds