Wall clock time and date at job start Wed Apr 1 2020 00:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47134 * 2 1 4 4 C 1.39004 * 120.00044 * 179.97438 * 3 2 1 5 5 C 1.39136 * 119.70670 * 359.97438 * 4 3 2 6 6 C 1.38294 * 119.09942 * 180.25498 * 5 4 3 7 7 C 1.50700 * 120.74797 * 179.72106 * 6 5 4 8 8 N 1.46503 * 109.47145 * 90.00003 * 7 6 5 9 9 C 1.34774 * 119.99927 * 179.97438 * 8 7 6 10 10 O 1.21574 * 120.00178 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99839 * 179.97438 * 9 8 7 12 12 C 1.39458 * 119.99913 * 175.15341 * 11 9 8 13 13 C 1.38640 * 119.64906 * 185.22441 * 12 11 9 14 14 C 1.40823 * 118.67625 * 179.97438 * 13 12 11 15 15 C 1.41543 * 120.99653 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00074 * 149.48942 * 15 14 13 17 17 C 1.40034 * 120.00225 * 329.48991 * 15 14 13 18 18 N 1.30736 * 119.99995 * 167.68660 * 17 15 14 19 19 Si 1.86797 * 119.99852 * 347.69181 * 17 15 14 20 20 H 1.48495 * 109.47318 * 92.43991 * 19 17 15 21 21 H 1.48505 * 109.47137 * 212.43873 * 19 17 15 22 22 H 1.48506 * 109.47230 * 332.43892 * 19 17 15 23 23 C 1.41159 * 118.00212 * 359.97438 * 14 13 12 24 24 C 1.36590 * 119.13040 * 359.97438 * 23 14 13 25 25 N 1.32068 * 121.25893 * 359.72639 * 24 23 14 26 26 C 1.38883 * 118.50129 * 359.43607 * 6 5 4 27 27 C 1.38021 * 119.33254 * 0.58751 * 26 6 5 28 28 N 1.31976 * 120.85451 * 359.67496 * 27 26 6 29 29 H 1.09005 * 109.47351 * 300.00473 * 1 2 3 30 30 H 1.09002 * 109.46977 * 59.99998 * 1 2 3 31 31 H 1.09002 * 109.47538 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47049 * 240.00042 * 2 1 3 33 33 H 1.08998 * 109.47120 * 119.99499 * 2 1 3 34 34 H 0.96998 * 119.99954 * 359.97438 * 3 2 1 35 35 H 1.08004 * 120.45018 * 359.97438 * 5 4 3 36 36 H 1.09005 * 109.46980 * 209.99657 * 7 6 5 37 37 H 1.08997 * 109.47276 * 329.99931 * 7 6 5 38 38 H 0.96997 * 120.00035 * 359.97438 * 8 7 6 39 39 H 0.97000 * 119.99640 * 355.14413 * 11 9 8 40 40 H 1.08000 * 120.65998 * 0.02562 * 13 12 11 41 41 H 0.97003 * 120.00047 * 180.02562 * 18 17 15 42 42 H 1.07997 * 120.43447 * 179.97438 * 23 14 13 43 43 H 1.08000 * 119.36705 * 179.97438 * 24 23 14 44 44 H 1.08007 * 120.33099 * 180.28837 * 26 6 5 45 45 H 1.07998 * 119.57156 * 179.70025 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3849 1.6352 0.0005 5 6 4.2837 0.5731 0.0016 6 6 5.6406 0.8402 0.0075 7 6 6.6467 -0.2818 0.0152 8 7 6.9794 -0.6488 -1.3636 9 6 7.8656 -1.6356 -1.6031 10 8 8.3885 -2.2214 -0.6750 11 7 8.1713 -1.9735 -2.8715 12 6 9.1615 -2.9234 -3.1207 13 6 9.5463 -3.1866 -4.4263 14 6 10.5485 -4.1493 -4.6544 15 6 10.9785 -4.4569 -5.9674 16 1 11.9963 -4.7732 -6.1421 17 6 10.0844 -4.3511 -7.0398 18 7 10.5288 -4.3975 -8.2685 19 14 8.2566 -4.1434 -6.7150 20 1 7.9207 -2.6973 -6.6828 21 1 7.4833 -4.8073 -7.7951 22 1 7.9127 -4.7607 -5.4088 23 6 11.1113 -4.7982 -3.5342 24 6 10.6681 -4.4714 -2.2843 25 7 9.7300 -3.5590 -2.1066 26 6 6.0551 2.1657 0.0002 27 6 5.1085 3.1701 -0.0004 28 7 3.8198 2.8857 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.3880 2.1185 -0.0004 35 1 3.9265 -0.4462 0.0025 36 1 7.5494 0.0432 0.5326 37 1 6.2242 -1.1452 0.5291 38 1 6.5619 -0.1816 -2.1040 39 1 7.7024 -1.5562 -3.6110 40 1 9.0873 -2.6632 -5.2520 41 1 9.9095 -4.3238 -9.0114 42 1 11.8823 -5.5434 -3.6639 43 1 11.0957 -4.9659 -1.4246 44 1 7.1077 2.4080 -0.0002 45 1 5.4266 4.2022 -0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365252039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:28 Heat of formation + Delta-G solvation = 31.483037 kcal Electronic energy + Delta-G solvation = -27848.945455 eV Core-core repulsion = 23865.691069 eV Total energy + Delta-G solvation = -3983.254386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.65854 -41.19855 -39.97311 -37.47539 -36.46934 -35.93001 -35.55218 -33.45557 -33.13458 -32.32790 -30.66171 -29.44059 -28.02081 -27.59015 -24.87713 -24.18359 -23.61961 -22.78213 -22.51584 -21.74576 -19.97532 -19.45165 -18.47079 -17.95632 -17.63198 -17.31490 -16.76426 -16.52251 -16.49855 -16.25232 -16.04721 -15.95995 -15.56613 -15.38420 -15.04248 -14.86993 -14.74957 -14.65886 -14.62630 -13.80428 -13.45825 -13.42590 -13.20100 -12.80947 -12.75758 -12.62920 -12.61224 -12.59689 -12.47793 -11.83211 -11.61541 -11.43289 -11.21036 -11.08623 -10.64437 -10.47139 -10.19286 -10.09330 -9.68436 -8.98010 -8.93634 -8.67757 -6.72197 0.16080 0.42110 0.61556 0.77626 1.23645 1.40119 1.48592 1.61235 2.09912 2.18821 2.20085 2.71262 2.89152 3.19765 3.44595 3.54448 3.76174 4.00909 4.02796 4.06252 4.20662 4.28348 4.28804 4.44039 4.48014 4.60642 4.61004 4.63959 4.68264 4.77406 4.84196 4.91180 4.93604 5.02953 5.13402 5.22791 5.30230 5.35773 5.43249 5.53003 5.63374 5.67306 5.82793 6.04911 6.11802 6.28789 6.53155 6.60412 6.69605 6.87239 7.20739 7.50215 7.75565 8.12103 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013484 B = 0.002302 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.105442 B =12158.524933 C =13024.240249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 N -0.724 5.724 4 C 0.387 3.613 5 C -0.224 4.224 6 C -0.019 4.019 7 C 0.186 3.814 8 N -0.725 5.725 9 C 0.694 3.306 10 O -0.570 6.570 11 N -0.664 5.664 12 C 0.385 3.615 13 C -0.327 4.327 14 C 0.114 3.886 15 C -0.467 4.467 16 H 0.066 0.934 17 C 0.050 3.950 18 N -0.838 5.838 19 Si 0.969 3.031 20 H -0.244 1.244 21 H -0.279 1.279 22 H -0.261 1.261 23 C -0.281 4.281 24 C 0.130 3.870 25 N -0.570 5.570 26 C -0.216 4.216 27 C 0.143 3.857 28 N -0.563 5.563 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.407 0.593 35 H 0.139 0.861 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.409 0.591 39 H 0.421 0.579 40 H 0.118 0.882 41 H 0.298 0.702 42 H 0.121 0.879 43 H 0.159 0.841 44 H 0.147 0.853 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.057 13.458 12.981 27.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.005 4.005 3 N -0.358 5.358 4 C 0.151 3.849 5 C -0.250 4.250 6 C -0.028 4.028 7 C 0.062 3.938 8 N -0.383 5.383 9 C 0.394 3.606 10 O -0.444 6.444 11 N -0.313 5.313 12 C 0.154 3.846 13 C -0.353 4.353 14 C 0.106 3.894 15 C -0.498 4.498 16 H 0.084 0.916 17 C -0.167 4.167 18 N -0.463 5.463 19 Si 0.793 3.207 20 H -0.169 1.169 21 H -0.206 1.206 22 H -0.185 1.185 23 C -0.304 4.304 24 C -0.022 4.022 25 N -0.290 5.290 26 C -0.239 4.239 27 C -0.014 4.014 28 N -0.281 5.281 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.243 0.757 35 H 0.157 0.843 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.244 0.756 39 H 0.259 0.741 40 H 0.136 0.864 41 H 0.108 0.892 42 H 0.139 0.861 43 H 0.176 0.824 44 H 0.165 0.835 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -20.536 13.604 14.475 28.572 hybrid contribution 0.105 -0.346 -1.903 1.937 sum -20.432 13.258 12.572 27.409 Atomic orbital electron populations 1.21938 0.92706 1.04062 1.02898 1.21487 0.96016 0.81411 1.01615 1.44658 1.01977 1.08828 1.80334 1.18564 0.86432 0.89044 0.90862 1.21403 0.92672 0.99756 1.11165 1.19915 0.93118 0.94430 0.95316 1.19976 0.96698 0.95014 0.82070 1.44934 1.46232 1.37745 1.09363 1.16120 0.80522 0.81048 0.82928 1.91005 1.55316 1.55241 1.42862 1.42506 1.38716 1.42057 1.08046 1.17937 0.88464 0.88873 0.89277 1.21273 1.10678 1.08711 0.94625 1.17897 0.89406 0.88320 0.93824 1.19481 0.99328 1.40762 0.90234 0.91572 1.26861 1.05803 0.90223 0.93817 1.69629 1.40120 1.35957 1.00635 0.85446 0.76518 0.80260 0.78481 1.16923 1.20566 1.18507 1.21878 1.08509 1.06591 0.93438 1.22107 0.91591 0.92123 0.96372 1.67459 1.15073 1.13380 1.33064 1.21976 1.02128 0.92228 1.07618 1.22828 0.86229 1.00867 0.91433 1.67216 1.19310 1.20408 1.21205 0.91598 0.91754 0.89561 0.91955 0.91743 0.75741 0.84347 0.90503 0.90904 0.75559 0.74131 0.86445 0.89151 0.86096 0.82351 0.83501 0.80211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 10.03 71.98 0.72 -0.24 16 2 C 0.12 1.17 5.61 86.38 0.48 1.65 16 3 N -0.72 -9.97 5.73 -345.08 -1.98 -11.94 16 4 C 0.39 7.05 7.65 133.06 1.02 8.07 16 5 C -0.22 -3.91 9.03 22.50 0.20 -3.70 16 6 C -0.02 -0.34 5.28 -19.70 -0.10 -0.44 16 7 C 0.19 3.87 5.84 85.63 0.50 4.37 16 8 N -0.72 -16.85 5.55 -482.30 -2.68 -19.52 16 9 C 0.69 23.72 8.52 179.05 1.53 25.24 16 10 O -0.57 -24.71 14.60 -3.95 -0.06 -24.76 16 11 N -0.66 -23.24 5.40 -322.37 -1.74 -24.98 16 12 C 0.38 17.12 7.42 132.76 0.99 18.10 16 13 C -0.33 -15.16 6.95 23.00 0.16 -15.00 16 14 C 0.11 5.74 5.17 -21.11 -0.11 5.63 16 15 C -0.47 -25.19 9.67 23.52 0.23 -24.97 16 16 H 0.07 3.82 8.06 -2.91 -0.02 3.79 16 17 C 0.05 2.53 5.48 85.29 0.47 3.00 16 18 N -0.84 -43.55 13.92 21.84 0.30 -43.25 16 19 Si 0.97 40.22 24.43 68.60 1.68 41.89 16 20 H -0.24 -9.01 6.67 99.48 0.66 -8.34 16 21 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 22 H -0.26 -11.48 6.65 99.48 0.66 -10.81 16 23 C -0.28 -13.03 9.85 22.60 0.22 -12.81 16 24 C 0.13 5.74 11.10 84.27 0.94 6.67 16 25 N -0.57 -27.03 7.85 -194.27 -1.53 -28.55 16 26 C -0.22 -3.40 9.81 22.37 0.22 -3.18 16 27 C 0.14 2.27 11.17 84.62 0.95 3.21 16 28 N -0.56 -10.93 10.39 -193.26 -2.01 -12.94 16 29 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.06 0.65 7.93 -2.39 -0.02 0.63 16 33 H 0.06 0.64 7.93 -2.39 -0.02 0.62 16 34 H 0.41 4.98 8.60 -92.71 -0.80 4.18 16 35 H 0.14 2.15 6.71 -2.91 -0.02 2.13 16 36 H 0.08 1.69 8.10 -2.38 -0.02 1.67 16 37 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 38 H 0.41 7.29 8.48 -92.71 -0.79 6.50 16 39 H 0.42 11.39 8.71 -92.71 -0.81 10.58 16 40 H 0.12 5.10 4.43 -2.91 -0.01 5.09 16 41 H 0.30 13.79 8.29 -92.71 -0.77 13.02 16 42 H 0.12 5.20 8.06 -2.91 -0.02 5.18 16 43 H 0.16 5.89 8.06 -2.91 -0.02 5.87 16 44 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 45 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -71.21 378.89 -1.02 -72.22 By element: Atomic # 1 Polarization: 37.65 SS G_CDS: -1.41 Total: 36.24 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 8.40 Total: 15.60 kcal Atomic # 7 Polarization: -131.56 SS G_CDS: -9.62 Total: -141.18 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.06 Total: -24.76 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 1.68 Total: 41.89 kcal Total: -71.21 -1.02 -72.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365252039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.704 kcal (2) G-P(sol) polarization free energy of solvation -71.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds