Wall clock time and date at job start Wed Apr 1 2020 00:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46983 * 2 1 4 4 C 1.50698 * 109.47340 * 239.99738 * 2 1 3 5 5 H 1.07994 * 119.99833 * 239.99905 * 4 2 1 6 6 C 1.37880 * 119.99857 * 59.99948 * 4 2 1 7 7 N 1.31512 * 119.99733 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 119.99957 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47541 * 59.99728 * 8 6 4 10 10 H 1.48497 * 109.47223 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46967 * 299.99758 * 8 6 4 12 12 N 1.46906 * 109.47090 * 119.99537 * 2 1 3 13 13 C 1.46903 * 110.99480 * 176.04806 * 12 2 1 14 14 C 1.38583 * 110.99914 * 300.00029 * 12 2 1 15 15 N 1.31213 * 126.47587 * 340.11421 * 14 12 2 16 16 N 1.28518 * 109.86128 * 179.97438 * 15 14 12 17 17 C 1.30294 * 110.05471 * 359.97438 * 16 15 14 18 18 C 1.50703 * 126.34789 * 179.97438 * 17 16 15 19 19 C 1.52997 * 117.49994 * 8.79164 * 18 17 16 20 20 C 1.53003 * 117.49597 * 300.13070 * 18 17 16 21 21 N 1.36449 * 126.46743 * 160.08900 * 14 12 2 22 22 C 1.46497 * 127.13876 * 0.02562 * 21 14 12 23 23 C 1.50706 * 109.46984 * 271.75192 * 22 21 14 24 24 C 1.35051 * 125.61255 * 94.91088 * 23 22 21 25 25 C 1.40473 * 107.10851 * 179.85260 * 24 23 22 26 26 C 1.36546 * 106.70536 * 0.40512 * 25 24 23 27 27 C 1.43202 * 125.98956 * 179.73052 * 26 25 24 28 28 N 8.68695 * 56.30628 * 131.60434 * 2 1 3 29 29 O 1.34047 * 125.61971 * 275.21983 * 23 22 21 30 30 H 1.09003 * 109.47189 * 300.00177 * 1 2 3 31 31 H 1.09000 * 109.46924 * 60.00263 * 1 2 3 32 32 H 1.08993 * 109.46985 * 180.02562 * 1 2 3 33 33 H 0.97003 * 119.99771 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.46393 * 177.70449 * 13 12 2 35 35 H 1.08998 * 109.47437 * 297.70020 * 13 12 2 36 36 H 1.08997 * 109.47582 * 57.70679 * 13 12 2 37 37 H 1.08994 * 115.54834 * 154.46354 * 18 17 16 38 38 H 1.09003 * 117.50006 * 359.97438 * 19 18 17 39 39 H 1.08997 * 117.50192 * 145.02556 * 19 18 17 40 40 H 1.09003 * 117.49514 * 214.98304 * 20 18 17 41 41 H 1.08997 * 117.50040 * 359.97438 * 20 18 17 42 42 H 1.08999 * 109.47408 * 31.75147 * 22 21 14 43 43 H 1.09002 * 109.46869 * 151.75549 * 22 21 14 44 44 H 1.08004 * 126.44827 * 359.97438 * 24 23 22 45 45 H 1.08001 * 126.64983 * 180.15377 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0078 9 1 1.8260 -2.5203 -4.0076 10 1 1.8260 -0.4208 -5.2203 11 1 3.8064 -1.1209 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1871 14 6 1.5753 -0.0639 2.3519 15 7 1.1418 1.1707 2.4495 16 7 0.8103 1.4223 3.6654 17 6 1.0104 0.3716 4.4096 18 6 0.7466 0.2618 5.8893 19 6 0.0015 1.4165 6.5617 20 6 1.4986 1.2213 6.8140 21 7 1.5055 -0.6124 3.5994 22 6 1.8822 -1.9732 3.9896 23 6 0.7003 -2.8916 3.8136 24 6 0.4496 -3.6507 2.7251 25 6 -0.7419 -4.3514 2.9756 26 6 -1.1670 -3.9719 4.2164 27 6 -2.3496 -4.4341 4.8786 28 7 -3.2891 -4.7991 5.4045 29 8 -0.2782 -3.0852 4.7091 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 0.7089 1.1613 -3.4844 34 1 3.8236 -1.2746 2.1052 35 1 3.8008 -1.3877 0.3290 36 1 3.9182 0.2035 1.1180 37 1 0.5530 -0.7451 6.2588 38 1 -0.2977 2.2559 5.9339 39 1 -0.6821 1.1693 7.3739 40 1 1.7993 0.8455 7.7920 41 1 2.1843 1.9315 6.3521 42 1 2.7054 -2.3162 3.3629 43 1 2.1940 -1.9785 5.0341 44 1 1.0527 -3.7096 1.8311 45 1 -1.2296 -5.0513 2.3132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417467550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:34 Heat of formation + Delta-G solvation = 183.280813 kcal Electronic energy + Delta-G solvation = -30075.817920 eV Core-core repulsion = 26099.145980 eV Total energy + Delta-G solvation = -3976.671941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.10713 -42.52148 -37.57389 -36.93986 -36.72345 -35.34393 -33.44439 -32.88660 -30.92452 -29.43486 -29.23392 -27.34519 -25.61880 -24.47986 -23.81565 -22.79838 -22.47270 -21.97352 -21.63407 -20.12342 -19.57688 -19.27569 -17.38384 -16.84877 -16.39682 -16.21664 -15.74854 -15.45946 -15.01871 -14.66180 -14.50413 -14.38424 -14.01087 -13.73175 -13.64241 -13.53380 -13.21466 -13.19137 -12.80229 -12.50711 -12.40663 -12.28093 -11.88601 -11.62780 -11.20832 -11.14053 -11.03556 -10.89978 -10.74590 -10.66605 -10.37898 -10.28708 -10.27232 -10.11525 -10.07960 -9.89607 -9.23883 -8.87788 -8.65084 -8.47388 -7.53505 -6.08249 -4.16433 0.61352 1.59276 1.91120 2.09361 2.64031 2.67271 3.00720 3.21483 3.26172 3.32417 3.32708 3.69191 3.85312 4.21463 4.26412 4.32381 4.50457 4.60385 4.61804 4.76152 4.80238 4.91634 4.98533 5.23685 5.34207 5.41485 5.51386 5.52410 5.56753 5.64982 5.78195 5.90446 6.04260 6.07290 6.10901 6.14925 6.24684 6.41597 6.62420 6.77895 6.92292 6.97822 7.07295 7.15611 7.37964 7.61462 7.68533 7.91370 8.20253 8.38127 8.85120 9.24497 9.48520 10.98030 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009721 B = 0.004094 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.583111 B = 6837.212244 C = 8670.850181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.231 3.769 3 H 0.025 0.975 4 C -0.517 4.517 5 H 0.065 0.935 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.460 5.460 13 C 0.041 3.959 14 C 0.390 3.610 15 N -0.311 5.311 16 N -0.281 5.281 17 C 0.189 3.811 18 C -0.080 4.080 19 C -0.150 4.150 20 C -0.161 4.161 21 N -0.485 5.485 22 C 0.199 3.801 23 C -0.003 4.003 24 C -0.162 4.162 25 C -0.114 4.114 26 C 0.037 3.963 27 C 0.295 3.705 28 N -0.383 5.383 29 O -0.152 6.152 30 H 0.020 0.980 31 H 0.089 0.911 32 H 0.026 0.974 33 H 0.264 0.736 34 H 0.043 0.957 35 H 0.095 0.905 36 H 0.034 0.966 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.134 0.866 43 H 0.111 0.889 44 H 0.173 0.827 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.529 -8.284 16.237 18.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.127 3.873 3 H 0.043 0.957 4 C -0.556 4.556 5 H 0.083 0.917 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.186 5.186 13 C -0.106 4.106 14 C 0.035 3.965 15 N -0.154 5.154 16 N -0.120 5.120 17 C -0.078 4.078 18 C -0.100 4.100 19 C -0.188 4.188 20 C -0.199 4.199 21 N -0.182 5.182 22 C 0.075 3.925 23 C -0.057 4.057 24 C -0.181 4.181 25 C -0.137 4.137 26 C -0.016 4.016 27 C -0.021 4.021 28 N -0.062 5.062 29 O -0.047 6.047 30 H 0.039 0.961 31 H 0.107 0.893 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.114 0.886 36 H 0.052 0.948 37 H 0.137 0.863 38 H 0.128 0.872 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.151 0.849 43 H 0.129 0.871 44 H 0.191 0.809 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.436 -7.599 16.707 18.411 hybrid contribution 1.115 -1.115 -0.976 1.855 sum 2.552 -8.714 15.731 18.164 Atomic orbital electron populations 1.21812 0.97015 0.99080 1.01190 1.19348 0.92949 0.92881 0.82149 0.95730 1.20987 1.32353 1.12820 0.89443 0.91735 1.24892 0.94975 0.94963 0.98952 1.69908 1.35844 1.22463 1.23823 0.86553 0.79051 0.79654 0.82075 1.20207 1.21284 1.20244 1.59258 1.10446 1.49660 0.99226 1.22324 0.85260 1.01365 1.01650 1.23114 1.00117 0.88366 0.84881 1.74856 1.19833 1.10373 1.10307 1.73930 1.18169 1.22134 0.97765 1.23492 1.03682 0.86341 0.94277 1.19973 1.08215 0.97306 0.84542 1.23000 0.94476 0.99311 1.01972 1.23072 0.95697 1.01644 0.99490 1.46189 1.51879 1.11364 1.08771 1.20117 0.91213 0.77049 1.04135 1.22728 0.91928 1.01255 0.89757 1.21842 0.98376 0.98308 0.99621 1.22022 0.96434 1.01177 0.94086 1.16453 0.90932 0.99976 0.94280 1.23577 0.91157 0.93946 0.93387 1.81368 1.10208 1.08659 1.05934 1.83999 1.28968 1.49626 1.42070 0.96124 0.89295 0.95495 0.92642 0.93827 0.88604 0.94766 0.86343 0.87167 0.88173 0.88156 0.88176 0.84866 0.87130 0.80924 0.81616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.80 37.16 0.33 -2.99 16 2 C 0.23 5.59 1.73 -68.86 -0.12 5.47 16 3 H 0.02 0.69 7.92 -51.93 -0.41 0.28 16 4 C -0.52 -12.99 7.95 -34.44 -0.27 -13.26 16 5 H 0.06 1.53 6.40 -52.49 -0.34 1.20 16 6 C 0.07 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.88 -24.47 11.32 55.43 0.63 -23.84 16 8 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 N -0.46 -8.96 4.66 -176.08 -0.82 -9.78 16 13 C 0.04 0.68 9.06 60.07 0.54 1.22 16 14 C 0.39 7.47 6.05 -318.88 -1.93 5.54 16 15 N -0.31 -6.86 9.97 30.31 0.30 -6.56 16 16 N -0.28 -5.54 11.79 32.99 0.39 -5.15 16 17 C 0.19 2.96 7.59 -154.01 -1.17 1.79 16 18 C -0.08 -0.90 5.84 -91.77 -0.54 -1.44 16 19 C -0.15 -1.55 10.15 -26.69 -0.27 -1.82 16 20 C -0.16 -1.50 10.24 -26.69 -0.27 -1.77 16 21 N -0.48 -7.29 2.79 -115.37 -0.32 -7.61 16 22 C 0.20 2.03 6.54 -5.19 -0.03 2.00 16 23 C 0.00 -0.04 6.90 -35.44 -0.24 -0.28 16 24 C -0.16 -1.79 10.77 -39.87 -0.43 -2.22 16 25 C -0.11 -1.17 10.84 -39.35 -0.43 -1.60 16 26 C 0.04 0.41 7.08 -38.27 -0.27 0.14 16 27 C 0.29 3.45 15.89 -22.45 -0.36 3.09 16 28 N -0.38 -5.05 18.54 41.87 0.78 -4.27 16 29 O -0.15 -1.77 10.67 4.81 0.05 -1.72 16 30 H 0.02 0.51 6.20 -51.93 -0.32 0.18 16 31 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 34 H 0.04 0.55 6.54 -51.93 -0.34 0.21 16 35 H 0.10 1.58 6.32 -51.93 -0.33 1.25 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.12 1.14 8.11 -51.93 -0.42 0.71 16 38 H 0.11 1.35 7.92 -51.93 -0.41 0.94 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.13 1.15 6.51 -51.93 -0.34 0.81 16 43 H 0.11 0.79 7.85 -51.93 -0.41 0.38 16 44 H 0.17 1.89 8.06 -52.48 -0.42 1.47 16 45 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 386.29 15.07 5.82 5.82 Total: -1.00 -31.74 386.29 -9.48 -41.21 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.72 Total: 1.40 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -5.56 Total: -4.53 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: 0.95 Total: -57.21 kcal Atomic # 8 Polarization: -1.77 SS G_CDS: 0.05 Total: -1.72 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.74 -9.48 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417467550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.494 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 192.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds