Wall clock time and date at job start Wed Apr 1 2020 00:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47397 * 2 1 4 4 C 1.50702 * 109.46908 * 119.99578 * 2 1 3 5 5 H 1.08002 * 120.00235 * 119.99726 * 4 2 1 6 6 C 1.37878 * 120.00044 * 300.00055 * 4 2 1 7 7 N 1.31523 * 119.99760 * 180.02562 * 6 4 2 8 8 Si 1.86793 * 120.00019 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.47104 * 90.00187 * 8 6 4 10 10 H 1.48506 * 109.47159 * 210.00206 * 8 6 4 11 11 H 1.48500 * 109.47323 * 330.00011 * 8 6 4 12 12 N 1.46902 * 109.47272 * 239.99462 * 2 1 3 13 13 C 1.46904 * 110.99491 * 306.04884 * 12 2 1 14 14 C 1.38575 * 110.99795 * 69.99808 * 12 2 1 15 15 N 1.31212 * 126.47914 * 293.48102 * 14 12 2 16 16 N 1.28524 * 109.86288 * 180.25743 * 15 14 12 17 17 C 1.30294 * 110.05458 * 359.74040 * 16 15 14 18 18 C 1.50701 * 126.34673 * 179.97438 * 17 16 15 19 19 C 1.52997 * 117.50226 * 8.79274 * 18 17 16 20 20 C 1.52997 * 117.50020 * 300.12700 * 18 17 16 21 21 N 1.36460 * 126.46878 * 113.30456 * 14 12 2 22 22 C 1.46494 * 127.13618 * 0.02562 * 21 14 12 23 23 C 1.50696 * 109.47356 * 266.64014 * 22 21 14 24 24 C 1.35047 * 125.61367 * 90.00254 * 23 22 21 25 25 C 1.40477 * 107.10919 * 179.97438 * 24 23 22 26 26 C 1.36546 * 106.70594 * 0.02562 * 25 24 23 27 27 C 1.43200 * 125.98999 * 180.02562 * 26 25 24 28 28 N 8.02496 * 124.46802 * 341.63729 * 2 1 3 29 29 O 1.34047 * 125.61895 * 270.26675 * 23 22 21 30 30 H 1.09006 * 109.47043 * 300.00406 * 1 2 3 31 31 H 1.08994 * 109.46814 * 60.00195 * 1 2 3 32 32 H 1.09000 * 109.47397 * 180.02562 * 1 2 3 33 33 H 0.96997 * 119.99498 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.46526 * 191.68439 * 13 12 2 35 35 H 1.08997 * 109.47647 * 311.67828 * 13 12 2 36 36 H 1.08995 * 109.47260 * 71.68901 * 13 12 2 37 37 H 1.09011 * 115.54568 * 154.46042 * 18 17 16 38 38 H 1.09004 * 117.49522 * 359.97438 * 19 18 17 39 39 H 1.08997 * 117.50051 * 145.01766 * 19 18 17 40 40 H 1.08999 * 117.50084 * 214.97951 * 20 18 17 41 41 H 1.09001 * 117.50122 * 359.97438 * 20 18 17 42 42 H 1.09006 * 109.47060 * 146.64026 * 22 21 14 43 43 H 1.09002 * 109.47225 * 26.64333 * 22 21 14 44 44 H 1.07993 * 126.45086 * 359.97438 * 24 23 22 45 45 H 1.07996 * 126.64971 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 2.1380 -0.8589 3.5567 8 14 0.6259 1.2800 2.6540 9 1 -0.8021 0.8747 2.6992 10 1 0.9772 1.9956 3.9070 11 1 0.8492 2.1774 1.4922 12 7 2.0197 -0.6926 -1.1994 13 6 1.4342 -2.0356 -1.3076 14 6 1.7680 0.0523 -2.3405 15 7 0.5897 0.3324 -2.8451 16 7 0.7273 1.0383 -3.9102 17 6 1.9910 1.2534 -4.1434 18 6 2.5660 2.0370 -5.2952 19 6 1.5886 2.8160 -6.1776 20 6 2.2547 1.5447 -6.7099 21 7 2.6989 0.6358 -3.1498 22 6 4.1548 0.6022 -2.9908 23 6 4.6043 1.8172 -2.2210 24 6 4.7233 1.8978 -0.8782 25 6 5.1682 3.1964 -0.5799 26 6 5.2988 3.8500 -1.7716 27 6 5.7296 5.2045 -1.9458 28 7 6.0717 6.2792 -2.0843 29 8 4.9471 2.9975 -2.7559 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.9033 -0.5276 4.4376 34 1 1.9614 -2.6008 -2.0762 35 1 1.5260 -2.5501 -0.3511 36 1 0.3811 -1.9523 -1.5759 37 1 3.5474 2.4781 -5.1203 38 1 0.5295 2.7613 -5.9253 39 1 1.9269 3.7692 -6.5836 40 1 3.0311 1.6622 -7.4659 41 1 1.6344 0.6538 -6.8077 42 1 4.6276 0.5989 -3.9730 43 1 4.4402 -0.2985 -2.4472 44 1 4.5156 1.1118 -0.1673 45 1 5.3674 3.6000 0.4018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417467551.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:37 Heat of formation + Delta-G solvation = 189.611151 kcal Electronic energy + Delta-G solvation = -30382.043667 eV Core-core repulsion = 26405.646230 eV Total energy + Delta-G solvation = -3976.397437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.10764 -42.63528 -37.84416 -36.96388 -36.91925 -35.38892 -33.38631 -32.82108 -30.94546 -30.25991 -28.98066 -27.31192 -25.64189 -25.18040 -23.99373 -22.76423 -22.54388 -21.97522 -21.56925 -20.08626 -19.55655 -19.42596 -17.39252 -16.90876 -16.76789 -16.26511 -15.87886 -15.60350 -15.14338 -14.85715 -14.59758 -14.30128 -13.88341 -13.68176 -13.62107 -13.59502 -13.29878 -13.12291 -12.78074 -12.58590 -12.39120 -12.24357 -12.16985 -11.75842 -11.70371 -11.53678 -11.32560 -11.18205 -10.97285 -10.74728 -10.61665 -10.30861 -10.23326 -10.15410 -10.09129 -9.61522 -9.18188 -8.84883 -8.73473 -8.58988 -8.04104 -6.21782 -4.22464 0.64113 1.57941 1.89062 2.01107 2.59630 2.68128 3.00235 3.04065 3.20350 3.31675 3.32673 3.70220 3.78269 4.16934 4.28381 4.29305 4.29558 4.58547 4.67671 4.72494 4.78133 4.88064 5.08046 5.11132 5.41215 5.43614 5.45327 5.49971 5.57220 5.69605 5.76760 5.87052 5.98270 6.04029 6.13164 6.16579 6.21136 6.26792 6.40591 6.49748 6.60542 6.67230 6.70396 6.90940 7.00352 7.08579 7.39812 7.54239 7.84778 8.42830 8.82310 8.99091 9.39178 10.89955 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008707 B = 0.005157 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3215.097920 B = 5428.554021 C = 7500.531331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.197 3.803 3 H 0.038 0.962 4 C -0.509 4.509 5 H 0.087 0.913 6 C 0.080 3.920 7 N -0.892 5.892 8 Si 0.879 3.121 9 H -0.277 1.277 10 H -0.296 1.296 11 H -0.269 1.269 12 N -0.458 5.458 13 C 0.041 3.959 14 C 0.377 3.623 15 N -0.312 5.312 16 N -0.288 5.288 17 C 0.201 3.799 18 C -0.084 4.084 19 C -0.149 4.149 20 C -0.158 4.158 21 N -0.470 5.470 22 C 0.199 3.801 23 C -0.011 4.011 24 C -0.160 4.160 25 C -0.113 4.113 26 C 0.034 3.966 27 C 0.296 3.704 28 N -0.385 5.385 29 O -0.154 6.154 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.266 0.734 34 H 0.050 0.950 35 H 0.098 0.902 36 H 0.040 0.960 37 H 0.122 0.878 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.144 0.856 44 H 0.181 0.819 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.508 3.172 -15.583 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.091 3.909 3 H 0.055 0.945 4 C -0.547 4.547 5 H 0.105 0.895 6 C -0.123 4.123 7 N -0.529 5.529 8 Si 0.710 3.290 9 H -0.204 1.204 10 H -0.223 1.223 11 H -0.194 1.194 12 N -0.183 5.183 13 C -0.107 4.107 14 C 0.021 3.979 15 N -0.154 5.154 16 N -0.127 5.127 17 C -0.066 4.066 18 C -0.104 4.104 19 C -0.187 4.187 20 C -0.197 4.197 21 N -0.164 5.164 22 C 0.076 3.924 23 C -0.064 4.064 24 C -0.180 4.180 25 C -0.136 4.136 26 C -0.019 4.019 27 C -0.019 4.019 28 N -0.063 5.063 29 O -0.049 6.049 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.116 0.884 36 H 0.059 0.941 37 H 0.139 0.861 38 H 0.128 0.872 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.128 0.872 43 H 0.161 0.839 44 H 0.199 0.801 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.027 4.822 -16.007 17.771 hybrid contribution -0.149 0.526 0.776 0.950 sum 5.878 5.349 -15.231 17.180 Atomic orbital electron populations 1.22875 0.99845 1.01821 1.00291 1.19831 0.90324 0.94605 0.86159 0.94468 1.20765 1.32531 1.14200 0.87249 0.89519 1.24791 0.95437 0.96378 0.95696 1.69852 1.45050 1.40032 0.97970 0.86991 0.81090 0.83935 0.76990 1.20423 1.22318 1.19450 1.59212 1.59017 1.02507 0.97586 1.22354 0.97471 0.87404 1.03424 1.22932 0.83779 0.97387 0.93792 1.74734 1.19830 1.15095 1.05762 1.73927 1.13703 1.14125 1.10952 1.23586 0.88971 1.00814 0.93181 1.20039 1.00453 1.02914 0.87023 1.23006 0.99408 0.95583 1.00730 1.23071 1.03459 0.99258 0.93874 1.46300 1.07365 1.41289 1.21465 1.20133 0.77088 0.93359 1.01825 1.22711 1.04255 0.85828 0.93624 1.22086 1.02140 0.98698 0.95072 1.22091 0.99729 0.93873 0.97872 1.16456 1.11964 0.86354 0.87081 1.23548 0.93442 0.90130 0.94811 1.81342 1.09522 1.10497 1.04947 1.83976 1.65555 1.20069 1.35276 0.93859 0.92677 0.92329 0.92371 0.93076 0.88379 0.94118 0.86056 0.87208 0.88075 0.88000 0.88151 0.87156 0.83870 0.80127 0.81527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.17 7.88 37.16 0.29 -3.88 16 2 C 0.20 4.28 1.87 -68.86 -0.13 4.15 16 3 H 0.04 0.87 7.11 -51.93 -0.37 0.50 16 4 C -0.51 -12.55 8.38 -34.44 -0.29 -12.84 16 5 H 0.09 2.28 7.44 -52.49 -0.39 1.89 16 6 C 0.08 2.10 5.45 -17.82 -0.10 2.01 16 7 N -0.89 -24.98 13.96 55.43 0.77 -24.20 16 8 Si 0.88 20.97 24.37 -169.99 -4.14 16.82 16 9 H -0.28 -6.62 6.87 56.52 0.39 -6.23 16 10 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.27 -6.34 6.53 56.52 0.37 -5.97 16 12 N -0.46 -8.44 4.74 -176.08 -0.83 -9.28 16 13 C 0.04 0.70 8.49 60.07 0.51 1.21 16 14 C 0.38 6.72 6.27 -318.88 -2.00 4.72 16 15 N -0.31 -6.13 9.80 30.31 0.30 -5.83 16 16 N -0.29 -5.19 11.79 32.99 0.39 -4.80 16 17 C 0.20 2.97 7.59 -154.02 -1.17 1.81 16 18 C -0.08 -0.90 5.92 -91.77 -0.54 -1.45 16 19 C -0.15 -1.45 10.15 -26.69 -0.27 -1.72 16 20 C -0.16 -1.37 10.24 -26.69 -0.27 -1.65 16 21 N -0.47 -6.84 2.79 -115.37 -0.32 -7.17 16 22 C 0.20 2.12 6.52 -5.20 -0.03 2.09 16 23 C -0.01 -0.13 6.90 -35.44 -0.24 -0.38 16 24 C -0.16 -2.06 10.77 -39.87 -0.43 -2.49 16 25 C -0.11 -1.32 10.84 -39.35 -0.43 -1.74 16 26 C 0.03 0.40 7.08 -38.27 -0.27 0.13 16 27 C 0.30 3.60 15.89 -22.46 -0.36 3.24 16 28 N -0.38 -5.20 18.54 41.85 0.78 -4.42 16 29 O -0.15 -1.82 10.67 4.80 0.05 -1.77 16 30 H 0.04 1.00 3.27 -51.93 -0.17 0.83 16 31 H 0.05 1.21 6.00 -51.93 -0.31 0.89 16 32 H 0.06 1.24 6.59 -51.93 -0.34 0.90 16 33 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 1.79 6.62 -51.93 -0.34 1.45 16 36 H 0.04 0.72 6.67 -51.93 -0.35 0.37 16 37 H 0.12 1.14 8.14 -51.92 -0.42 0.72 16 38 H 0.11 1.25 7.92 -51.93 -0.41 0.83 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.11 0.82 8.01 -51.93 -0.42 0.40 16 43 H 0.14 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.18 2.56 8.06 -52.49 -0.42 2.13 16 45 H 0.17 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 380.31 15.07 5.73 5.73 Total: -1.00 -30.57 380.31 -8.67 -39.24 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.66 Total: 2.45 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -5.73 Total: -6.78 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 1.08 Total: -55.70 kcal Atomic # 8 Polarization: -1.82 SS G_CDS: 0.05 Total: -1.77 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.14 Total: 16.82 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.57 -8.67 -39.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417467551.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.851 kcal (2) G-P(sol) polarization free energy of solvation -30.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 189.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds