Wall clock time and date at job start Wed Apr 1 2020 00:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47207 * 2 1 4 4 N 1.46506 * 109.46656 * 119.99504 * 2 1 3 5 5 C 1.34768 * 119.99967 * 274.99714 * 4 2 1 6 6 O 1.21584 * 120.00380 * 0.02562 * 5 4 2 7 7 N 1.34783 * 120.00069 * 180.02562 * 5 4 2 8 8 C 1.39954 * 120.00177 * 174.81819 * 7 5 4 9 9 C 1.39285 * 119.94374 * 146.38690 * 8 7 5 10 10 C 1.38495 * 120.42940 * 179.97438 * 9 8 7 11 11 C 1.37686 * 120.31738 * 359.97438 * 10 9 8 12 12 C 1.40742 * 119.88576 * 0.03274 * 11 10 9 13 13 C 1.41399 * 120.20972 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00305 * 151.76849 * 13 12 11 15 15 C 1.39935 * 120.00093 * 331.76527 * 13 12 11 16 16 N 1.30826 * 119.99891 * 348.99350 * 15 13 12 17 17 Si 1.86797 * 120.00046 * 168.99679 * 15 13 12 18 18 H 1.48501 * 109.47621 * 59.99971 * 17 15 13 19 19 H 1.48499 * 109.47180 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47116 * 299.99872 * 17 15 13 21 21 C 1.38234 * 119.95036 * 326.11390 * 8 7 5 22 22 C 1.50693 * 109.46944 * 239.99334 * 2 1 3 23 23 N 1.30503 * 126.37396 * 285.02119 * 22 2 1 24 24 N 1.28579 * 109.66699 * 179.97438 * 23 22 2 25 25 C 1.30672 * 109.63337 * 359.96505 * 24 23 22 26 26 N 1.35164 * 107.33572 * 359.87260 * 25 24 23 27 27 C 1.46801 * 111.15238 * 180.02562 * 26 25 24 28 28 C 1.54426 * 105.55359 * 17.22688 * 27 26 25 29 29 C 1.51345 * 142.71773 * 180.25657 * 25 24 23 30 30 H 1.09005 * 109.47188 * 60.00279 * 1 2 3 31 31 H 1.08998 * 109.47265 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47575 * 300.00813 * 1 2 3 33 33 H 0.97003 * 119.99967 * 95.00372 * 4 2 1 34 34 H 0.96997 * 119.99503 * 354.82654 * 7 5 4 35 35 H 1.08001 * 119.78825 * 359.97438 * 9 8 7 36 36 H 1.07995 * 119.83995 * 180.02562 * 10 9 8 37 37 H 1.07998 * 120.05059 * 180.02562 * 11 10 9 38 38 H 0.97007 * 120.00167 * 179.97438 * 16 15 13 39 39 H 1.08003 * 120.15447 * 359.97438 * 21 8 7 40 40 H 1.09003 * 110.23226 * 136.24496 * 27 26 25 41 41 H 1.08998 * 110.23011 * 258.20525 * 27 26 25 42 42 H 1.08996 * 110.96061 * 92.51050 * 28 27 26 43 43 H 1.09007 * 110.96287 * 216.21112 * 28 27 26 44 44 H 1.09005 * 110.46942 * 282.14463 * 29 25 24 45 45 H 1.08994 * 110.47599 * 44.75079 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1469 -0.0181 2.3571 6 8 1.8575 1.1615 2.4118 7 7 2.5966 -0.6533 3.4576 8 6 2.8335 0.0673 4.6338 9 6 2.6103 -0.5302 5.8720 10 6 2.8419 0.1733 7.0423 11 6 3.2962 1.4722 6.9941 12 6 3.5261 2.0890 5.7501 13 6 3.9932 3.4224 5.6926 14 1 4.5864 3.7510 4.8521 15 6 3.6868 4.3162 6.7247 16 7 2.7985 3.9918 7.6287 17 14 4.5460 5.9726 6.8116 18 1 4.2626 6.7429 5.5741 19 1 4.0483 6.7271 7.9898 20 1 6.0106 5.7643 6.9405 21 6 3.2939 1.3688 4.5649 22 6 2.0323 -0.7105 -1.2303 23 7 2.0335 -1.9997 -1.4333 24 7 2.5338 -2.2552 -2.5899 25 6 2.8739 -1.1387 -3.1775 26 7 2.5629 -0.1289 -2.3346 27 6 2.9120 1.1730 -2.9160 28 6 3.0908 0.9167 -4.4283 29 6 3.4771 -0.5824 -4.4492 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2490 -1.6317 1.1528 34 1 2.7561 -1.6098 3.4343 35 1 2.2543 -1.5487 5.9199 36 1 2.6660 -0.2994 7.9972 37 1 3.4758 2.0166 7.9093 38 1 2.5863 4.6113 8.3445 39 1 3.4719 1.8313 3.6052 40 1 2.1076 1.8890 -2.7476 41 1 3.8422 1.5416 -2.4836 42 1 2.1594 1.0925 -4.9663 43 1 3.8955 1.5292 -4.8352 44 1 4.5601 -0.7066 -4.4434 45 1 3.0414 -1.0682 -5.3222 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466577325.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:34 Heat of formation + Delta-G solvation = 85.698670 kcal Electronic energy + Delta-G solvation = -28617.028036 eV Core-core repulsion = 24636.124616 eV Total energy + Delta-G solvation = -3980.903420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.72593 -40.00998 -37.76764 -37.43844 -35.72230 -34.32212 -33.07850 -32.55574 -30.80545 -29.76715 -29.69042 -27.89187 -27.73929 -25.25151 -24.29492 -23.04703 -21.91693 -21.41653 -20.87666 -20.42219 -19.97494 -18.20948 -17.74399 -17.43154 -16.37576 -16.15175 -15.48225 -15.25677 -14.95496 -14.79941 -14.55466 -14.43022 -14.07057 -13.95630 -13.71008 -13.65069 -13.19787 -12.91517 -12.81959 -12.31773 -12.24841 -12.08973 -11.98436 -11.77523 -11.65837 -11.54235 -11.26776 -11.08905 -10.64887 -10.60378 -10.47161 -10.42585 -10.15391 -9.73646 -9.60159 -9.36694 -9.18283 -9.03265 -8.87797 -7.36832 -6.82401 -6.61782 -4.30304 1.42104 1.99606 2.51652 2.78541 2.91794 3.04967 3.10945 3.14316 3.24585 3.26906 3.67899 3.77385 3.93645 4.00448 4.10304 4.21913 4.54678 4.70767 4.72792 4.79756 4.82009 4.99113 5.01387 5.11572 5.22933 5.29599 5.40179 5.62328 5.74451 5.77564 5.84586 6.09447 6.27652 6.42295 6.44301 6.49783 6.80072 6.82765 7.08498 7.13534 7.29587 7.38622 7.72793 7.85453 8.04166 8.14040 8.29873 8.42752 8.46411 8.71170 8.93111 9.01175 9.06572 10.31380 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.002476 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.823138 B =11304.937389 C =12633.068510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.257 3.743 3 H 0.103 0.897 4 N -0.741 5.741 5 C 0.702 3.298 6 O -0.564 6.564 7 N -0.679 5.679 8 C 0.167 3.833 9 C -0.258 4.258 10 C -0.094 4.094 11 C -0.169 4.169 12 C 0.119 3.881 13 C -0.458 4.458 14 H 0.075 0.925 15 C 0.073 3.927 16 N -0.802 5.802 17 Si 0.911 3.089 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.265 1.265 21 C -0.207 4.207 22 C 0.192 3.808 23 N -0.277 5.277 24 N -0.279 5.279 25 C 0.155 3.845 26 N -0.487 5.487 27 C 0.097 3.903 28 C -0.128 4.128 29 C -0.040 4.040 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.402 0.598 34 H 0.396 0.604 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.279 0.721 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.197 -5.081 -21.746 22.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.148 3.852 3 H 0.121 0.879 4 N -0.399 5.399 5 C 0.403 3.597 6 O -0.439 6.439 7 N -0.325 5.325 8 C 0.075 3.925 9 C -0.280 4.280 10 C -0.113 4.113 11 C -0.189 4.189 12 C 0.116 3.884 13 C -0.489 4.489 14 H 0.093 0.907 15 C -0.143 4.143 16 N -0.428 5.428 17 Si 0.736 3.264 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.190 1.190 21 C -0.229 4.229 22 C -0.075 4.075 23 N -0.117 5.117 24 N -0.120 5.120 25 C -0.113 4.113 26 N -0.178 5.178 27 C -0.025 4.025 28 C -0.166 4.166 29 C -0.079 4.079 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.237 0.763 34 H 0.229 0.771 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.139 0.861 38 H 0.090 0.910 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.452 -5.267 -21.135 21.787 hybrid contribution 0.553 1.118 -0.124 1.253 sum 0.101 -4.150 -21.259 21.661 Atomic orbital electron populations 1.22190 0.92907 1.03385 1.03187 1.18735 0.94389 0.94939 0.77130 0.87905 1.45033 1.72882 1.14056 1.07942 1.15871 0.78538 0.85256 0.80082 1.90994 1.55246 1.13833 1.83818 1.42562 1.68806 1.11023 1.10079 1.17224 0.99867 0.92574 0.82815 1.20046 1.16796 0.99867 0.91295 1.20473 1.00228 0.95132 0.95446 1.21401 1.05454 0.93244 0.98754 1.17493 0.88178 0.92452 0.90292 1.19483 1.29632 0.94673 1.05073 0.90729 1.25868 0.93547 1.00465 0.94413 1.69798 1.24683 1.36665 1.11653 0.86331 0.80438 0.81197 0.78462 1.19120 1.20400 1.18974 1.20977 1.09328 0.94273 0.98288 1.24513 1.01338 0.90600 0.91069 1.74368 1.17890 1.09907 1.09540 1.74000 1.14819 1.21595 1.01578 1.26002 1.03104 0.85769 0.96385 1.47158 1.45381 1.10816 1.14483 1.22531 1.03384 0.82451 0.94131 1.22864 1.04389 0.95677 0.93700 1.20721 1.01534 0.94038 0.91648 0.91901 0.91336 0.90080 0.76311 0.77058 0.89256 0.89002 0.86100 0.91022 0.87554 0.88142 0.88241 0.89036 0.87550 0.87836 0.87904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.47 37.16 0.35 -1.51 16 2 C 0.26 3.33 3.12 -69.08 -0.22 3.11 16 3 H 0.10 1.40 7.58 -51.93 -0.39 1.01 16 4 N -0.74 -10.63 5.07 -59.82 -0.30 -10.93 16 5 C 0.70 13.09 8.26 -86.92 -0.72 12.37 16 6 O -0.56 -12.88 13.72 5.29 0.07 -12.80 16 7 N -0.68 -12.58 5.35 -14.27 -0.08 -12.66 16 8 C 0.17 3.86 6.26 -83.76 -0.52 3.34 16 9 C -0.26 -5.79 9.97 -39.10 -0.39 -6.18 16 10 C -0.09 -2.22 10.02 -39.69 -0.40 -2.62 16 11 C -0.17 -4.48 8.66 -38.84 -0.34 -4.82 16 12 C 0.12 3.30 5.55 -106.85 -0.59 2.71 16 13 C -0.46 -12.68 9.06 -37.74 -0.34 -13.03 16 14 H 0.07 2.00 7.87 -52.49 -0.41 1.59 16 15 C 0.07 1.91 5.25 -17.34 -0.09 1.82 16 16 N -0.80 -21.42 10.81 55.55 0.60 -20.82 16 17 Si 0.91 19.32 29.57 -169.99 -5.03 14.29 16 18 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 C -0.21 -5.43 8.39 -38.69 -0.32 -5.75 16 22 C 0.19 2.41 7.09 -154.89 -1.10 1.31 16 23 N -0.28 -4.00 11.92 32.81 0.39 -3.60 16 24 N -0.28 -3.93 12.22 32.93 0.40 -3.53 16 25 C 0.16 1.61 8.69 -154.85 -1.35 0.27 16 26 N -0.49 -4.88 3.62 -109.39 -0.40 -5.28 16 27 C 0.10 0.54 7.77 -3.13 -0.02 0.51 16 28 C -0.13 -0.35 7.18 -25.03 -0.18 -0.53 16 29 C -0.04 -0.19 6.86 -26.61 -0.18 -0.37 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.40 5.14 8.38 -40.82 -0.34 4.80 16 34 H 0.40 5.81 8.83 -40.82 -0.36 5.45 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 36 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 37 H 0.12 3.30 6.18 -52.49 -0.32 2.97 16 38 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 39 H 0.11 2.87 6.44 -52.48 -0.34 2.54 16 40 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 43 H 0.11 0.05 8.14 -51.92 -0.42 -0.38 16 44 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -35.41 378.19 -11.00 -46.42 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -5.96 Total: 12.59 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -6.41 Total: -9.38 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.62 Total: -56.82 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.07 Total: -12.80 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.41 -11.00 -46.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466577325.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.116 kcal (2) G-P(sol) polarization free energy of solvation -35.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds