Wall clock time and date at job start Wed Apr 1 2020 00:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47207 * 2 1 4 4 N 1.46506 * 109.46656 * 119.99504 * 2 1 3 5 5 C 1.34768 * 119.99967 * 274.99714 * 4 2 1 6 6 O 1.21584 * 120.00380 * 0.02562 * 5 4 2 7 7 N 1.34783 * 120.00069 * 180.02562 * 5 4 2 8 8 C 1.39954 * 120.00177 * 174.81819 * 7 5 4 9 9 C 1.39285 * 119.94374 * 146.38690 * 8 7 5 10 10 C 1.38495 * 120.42940 * 179.97438 * 9 8 7 11 11 C 1.37686 * 120.31738 * 359.97438 * 10 9 8 12 12 C 1.40742 * 119.88576 * 0.03274 * 11 10 9 13 13 C 1.41399 * 120.20972 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00305 * 151.76849 * 13 12 11 15 15 C 1.39935 * 120.00093 * 331.76527 * 13 12 11 16 16 N 1.30826 * 119.99891 * 348.99350 * 15 13 12 17 17 Si 1.86797 * 120.00046 * 168.99679 * 15 13 12 18 18 H 1.48501 * 109.47621 * 59.99971 * 17 15 13 19 19 H 1.48499 * 109.47180 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47116 * 299.99872 * 17 15 13 21 21 C 1.38234 * 119.95036 * 326.11390 * 8 7 5 22 22 C 1.50693 * 109.46944 * 239.99334 * 2 1 3 23 23 N 1.30503 * 126.37396 * 285.02119 * 22 2 1 24 24 N 1.28579 * 109.66699 * 179.97438 * 23 22 2 25 25 C 1.30672 * 109.63337 * 359.96505 * 24 23 22 26 26 N 1.35164 * 107.33572 * 359.87260 * 25 24 23 27 27 C 1.46801 * 111.15238 * 180.02562 * 26 25 24 28 28 C 1.54426 * 105.55359 * 17.22688 * 27 26 25 29 29 C 1.51345 * 142.71773 * 180.25657 * 25 24 23 30 30 H 1.09005 * 109.47188 * 60.00279 * 1 2 3 31 31 H 1.08998 * 109.47265 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47575 * 300.00813 * 1 2 3 33 33 H 0.97003 * 119.99967 * 95.00372 * 4 2 1 34 34 H 0.96997 * 119.99503 * 354.82654 * 7 5 4 35 35 H 1.08001 * 119.78825 * 359.97438 * 9 8 7 36 36 H 1.07995 * 119.83995 * 180.02562 * 10 9 8 37 37 H 1.07998 * 120.05059 * 180.02562 * 11 10 9 38 38 H 0.97007 * 120.00167 * 179.97438 * 16 15 13 39 39 H 1.08003 * 120.15447 * 359.97438 * 21 8 7 40 40 H 1.09003 * 110.23226 * 136.24496 * 27 26 25 41 41 H 1.08998 * 110.23011 * 258.20525 * 27 26 25 42 42 H 1.08996 * 110.96061 * 92.51050 * 28 27 26 43 43 H 1.09007 * 110.96287 * 216.21112 * 28 27 26 44 44 H 1.09005 * 110.46942 * 282.14463 * 29 25 24 45 45 H 1.08994 * 110.47599 * 44.75079 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1469 -0.0181 2.3571 6 8 1.8575 1.1615 2.4118 7 7 2.5966 -0.6533 3.4576 8 6 2.8335 0.0673 4.6338 9 6 2.6103 -0.5302 5.8720 10 6 2.8419 0.1733 7.0423 11 6 3.2962 1.4722 6.9941 12 6 3.5261 2.0890 5.7501 13 6 3.9932 3.4224 5.6926 14 1 4.5864 3.7510 4.8521 15 6 3.6868 4.3162 6.7247 16 7 2.7985 3.9918 7.6287 17 14 4.5460 5.9726 6.8116 18 1 4.2626 6.7429 5.5741 19 1 4.0483 6.7271 7.9898 20 1 6.0106 5.7643 6.9405 21 6 3.2939 1.3688 4.5649 22 6 2.0323 -0.7105 -1.2303 23 7 2.0335 -1.9997 -1.4333 24 7 2.5338 -2.2552 -2.5899 25 6 2.8739 -1.1387 -3.1775 26 7 2.5629 -0.1289 -2.3346 27 6 2.9120 1.1730 -2.9160 28 6 3.0908 0.9167 -4.4283 29 6 3.4771 -0.5824 -4.4492 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2490 -1.6317 1.1528 34 1 2.7561 -1.6098 3.4343 35 1 2.2543 -1.5487 5.9199 36 1 2.6660 -0.2994 7.9972 37 1 3.4758 2.0166 7.9093 38 1 2.5863 4.6113 8.3445 39 1 3.4719 1.8313 3.6052 40 1 2.1076 1.8890 -2.7476 41 1 3.8422 1.5416 -2.4836 42 1 2.1594 1.0925 -4.9663 43 1 3.8955 1.5292 -4.8352 44 1 4.5601 -0.7066 -4.4434 45 1 3.0414 -1.0682 -5.3222 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466577325.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:33 Heat of formation + Delta-G solvation = 63.014149 kcal Electronic energy + Delta-G solvation = -28618.011711 eV Core-core repulsion = 24636.124616 eV Total energy + Delta-G solvation = -3981.887095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.55299 -41.55860 -39.30203 -38.28572 -37.06721 -36.08857 -34.87652 -33.45270 -31.86670 -31.72849 -30.49498 -29.48151 -28.53122 -27.23515 -25.37151 -23.80514 -23.18553 -22.71937 -22.26769 -21.65291 -21.32301 -19.65660 -19.46457 -18.21077 -17.66875 -17.24771 -17.09059 -16.55435 -16.34323 -16.30172 -15.92243 -15.71892 -15.16691 -14.88930 -14.70579 -14.56664 -14.36185 -14.23320 -14.03445 -13.96524 -13.56292 -13.25124 -13.09663 -12.82169 -12.77974 -12.58696 -12.53587 -12.50986 -12.26077 -12.21489 -12.00777 -11.59395 -11.50711 -11.35732 -11.11051 -11.05855 -10.73676 -10.43118 -10.18297 -9.34742 -8.68732 -8.55284 -6.36527 0.56296 0.93511 1.02590 1.22836 1.36919 1.49352 1.51911 1.60114 1.77545 2.10327 2.23028 2.62923 2.78267 3.06036 3.17157 3.41383 3.66410 3.75513 3.82919 3.92463 3.98686 4.31399 4.38329 4.45316 4.47959 4.50153 4.64263 4.69084 4.75755 4.81290 4.97232 5.02472 5.05591 5.07550 5.11500 5.13410 5.14340 5.16380 5.26945 5.35215 5.66913 5.73310 5.82820 6.04492 6.12055 6.14996 6.37901 6.70684 6.96321 6.96482 7.02959 7.48655 7.55187 8.39330 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.002476 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.823138 B =11304.937389 C =12633.068510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.259 3.741 3 H 0.094 0.906 4 N -0.722 5.722 5 C 0.703 3.297 6 O -0.607 6.607 7 N -0.669 5.669 8 C 0.174 3.826 9 C -0.248 4.248 10 C -0.092 4.092 11 C -0.194 4.194 12 C 0.088 3.912 13 C -0.500 4.500 14 H 0.066 0.934 15 C 0.031 3.969 16 N -0.832 5.832 17 Si 0.986 3.014 18 H -0.264 1.264 19 H -0.264 1.264 20 H -0.258 1.258 21 C -0.231 4.231 22 C 0.180 3.820 23 N -0.303 5.303 24 N -0.328 5.328 25 C 0.162 3.838 26 N -0.488 5.488 27 C 0.081 3.919 28 C -0.111 4.111 29 C -0.040 4.040 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.412 0.588 34 H 0.417 0.583 35 H 0.130 0.870 36 H 0.123 0.877 37 H 0.106 0.894 38 H 0.287 0.713 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.138 0.862 44 H 0.120 0.880 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.508 -5.209 -23.523 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.151 3.849 3 H 0.112 0.888 4 N -0.380 5.380 5 C 0.404 3.596 6 O -0.486 6.486 7 N -0.317 5.317 8 C 0.081 3.919 9 C -0.270 4.270 10 C -0.111 4.111 11 C -0.214 4.214 12 C 0.085 3.915 13 C -0.530 4.530 14 H 0.084 0.916 15 C -0.182 4.182 16 N -0.459 5.459 17 Si 0.806 3.194 18 H -0.189 1.189 19 H -0.188 1.188 20 H -0.182 1.182 21 C -0.253 4.253 22 C -0.088 4.088 23 N -0.143 5.143 24 N -0.168 5.168 25 C -0.107 4.107 26 N -0.179 5.179 27 C -0.039 4.039 28 C -0.149 4.149 29 C -0.079 4.079 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.249 0.751 34 H 0.255 0.745 35 H 0.148 0.852 36 H 0.141 0.859 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.156 0.844 44 H 0.138 0.862 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.141 -5.460 -22.964 23.605 hybrid contribution 0.426 1.030 0.300 1.154 sum 0.285 -4.430 -22.664 23.095 Atomic orbital electron populations 1.22098 0.91976 1.03460 1.03250 1.18750 0.95055 0.94336 0.76753 0.88778 1.44861 1.71666 1.14331 1.07101 1.15961 0.78109 0.84716 0.80819 1.90974 1.57079 1.15946 1.84585 1.42335 1.68536 1.11863 1.08949 1.17274 0.98088 0.91803 0.84761 1.20458 1.14834 1.01410 0.90259 1.20839 0.98645 0.94094 0.97510 1.21370 1.07596 0.94709 0.97729 1.17841 0.89098 0.93165 0.91368 1.19713 1.31361 0.95743 1.06231 0.91568 1.26744 0.93766 1.04247 0.93439 1.69856 1.25488 1.38327 1.12204 0.85211 0.79329 0.76011 0.78836 1.18872 1.18811 1.18205 1.20928 1.11295 0.95998 0.97043 1.24224 1.02409 0.90516 0.91654 1.74251 1.18748 1.10969 1.10366 1.73883 1.17036 1.23745 1.02147 1.26993 1.00998 0.84900 0.97767 1.47458 1.44371 1.12464 1.13578 1.23013 1.04004 0.80834 0.96049 1.22940 1.06176 0.94347 0.91412 1.21086 1.02256 0.95138 0.89458 0.89816 0.91175 0.91965 0.75120 0.74530 0.85171 0.85861 0.87560 0.90246 0.89517 0.87148 0.87681 0.87880 0.84392 0.86190 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.47 71.98 0.68 -2.82 16 2 C 0.26 6.74 3.12 44.24 0.14 6.87 16 3 H 0.09 2.63 7.58 -2.39 -0.02 2.61 16 4 N -0.72 -20.68 5.07 -461.43 -2.34 -23.02 16 5 C 0.70 26.44 8.26 179.06 1.48 27.92 16 6 O -0.61 -28.68 13.72 -3.98 -0.05 -28.73 16 7 N -0.67 -24.33 5.35 -317.33 -1.70 -26.03 16 8 C 0.17 8.03 6.26 38.09 0.24 8.27 16 9 C -0.25 -10.67 9.97 22.58 0.23 -10.44 16 10 C -0.09 -4.28 10.02 22.20 0.22 -4.06 16 11 C -0.19 -10.59 8.66 22.75 0.20 -10.39 16 12 C 0.09 5.11 5.55 -21.31 -0.12 4.99 16 13 C -0.50 -29.09 9.06 23.46 0.21 -28.87 16 14 H 0.07 3.77 7.87 -2.91 -0.02 3.75 16 15 C 0.03 1.68 5.25 85.25 0.45 2.12 16 16 N -0.83 -45.66 10.81 21.82 0.24 -45.42 16 17 Si 0.99 40.31 29.57 68.60 2.03 42.34 16 18 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 20 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 21 C -0.23 -12.58 8.39 22.85 0.19 -12.38 16 22 C 0.18 4.48 7.09 137.94 0.98 5.46 16 23 N -0.30 -8.76 11.92 -50.10 -0.60 -9.35 16 24 N -0.33 -9.15 12.22 -49.74 -0.61 -9.76 16 25 C 0.16 3.15 8.69 138.24 1.20 4.35 16 26 N -0.49 -9.23 3.62 -499.99 -1.81 -11.05 16 27 C 0.08 0.72 7.77 86.81 0.67 1.40 16 28 C -0.11 -0.19 7.18 31.70 0.23 0.04 16 29 C -0.04 -0.26 6.86 30.67 0.21 -0.05 16 30 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.41 10.33 8.38 -92.71 -0.78 9.56 16 34 H 0.42 11.46 8.83 -92.71 -0.82 10.64 16 35 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 36 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 37 H 0.11 6.01 6.18 -2.91 -0.02 6.00 16 38 H 0.29 14.21 8.30 -92.70 -0.77 13.44 16 39 H 0.09 4.97 6.44 -2.91 -0.02 4.95 16 40 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 43 H 0.14 -0.54 8.14 -2.38 -0.02 -0.56 16 44 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 45 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -82.09 378.19 1.82 -80.27 By element: Atomic # 1 Polarization: 38.88 SS G_CDS: -0.54 Total: 38.34 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 7.21 Total: -7.58 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -6.82 Total: -124.63 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.05 Total: -28.73 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -82.09 1.82 -80.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466577325.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.283 kcal (2) G-P(sol) polarization free energy of solvation -82.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds