Wall clock time and date at job start Wed Apr 1 2020 00:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47145 * 2 1 4 4 C 1.38998 * 120.00366 * 179.97438 * 3 2 1 5 5 C 1.39142 * 119.70339 * 0.02562 * 4 3 2 6 6 C 1.38300 * 119.09816 * 180.25327 * 5 4 3 7 7 C 1.50700 * 120.74680 * 179.71661 * 6 5 4 8 8 N 1.46503 * 109.46830 * 90.00102 * 7 6 5 9 9 C 1.34774 * 120.00066 * 179.97438 * 8 7 6 10 10 O 1.21578 * 119.99859 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00125 * 179.97438 * 9 8 7 12 12 C 1.39241 * 119.99937 * 174.85568 * 11 9 8 13 13 C 1.39685 * 119.57456 * 185.40778 * 12 11 9 14 14 C 1.38653 * 119.49322 * 179.73211 * 13 12 11 15 15 C 1.38345 * 118.67059 * 0.53091 * 14 13 12 16 16 C 1.40569 * 119.13310 * 359.73324 * 15 14 13 17 17 C 1.41335 * 119.79025 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99811 * 359.97438 * 17 16 15 19 19 C 1.40029 * 120.00219 * 179.97438 * 17 16 15 20 20 N 1.30733 * 119.99770 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99910 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47162 * 90.00123 * 21 19 17 23 23 H 1.48502 * 109.46808 * 210.00058 * 21 19 17 24 24 H 1.48502 * 109.47347 * 329.99604 * 21 19 17 25 25 N 1.31903 * 119.57807 * 5.68048 * 12 11 9 26 26 C 1.38882 * 118.50257 * 359.43637 * 6 5 4 27 27 C 1.38026 * 119.33070 * 0.58841 * 26 6 5 28 28 N 1.31968 * 120.85541 * 359.67405 * 27 26 6 29 29 H 1.08994 * 109.47212 * 59.99482 * 1 2 3 30 30 H 1.09003 * 109.47156 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47271 * 299.99865 * 1 2 3 32 32 H 1.08995 * 109.46971 * 240.00010 * 2 1 3 33 33 H 1.08998 * 109.47291 * 119.99781 * 2 1 3 34 34 H 0.97006 * 119.99999 * 0.02562 * 3 2 1 35 35 H 1.07998 * 120.44793 * 359.97438 * 5 4 3 36 36 H 1.09000 * 109.47206 * 209.99529 * 7 6 5 37 37 H 1.08993 * 109.47306 * 330.00158 * 7 6 5 38 38 H 0.97002 * 119.99705 * 359.97438 * 8 7 6 39 39 H 0.97000 * 119.99950 * 354.86429 * 11 9 8 40 40 H 1.07997 * 120.25337 * 359.97438 * 13 12 11 41 41 H 1.08000 * 120.66390 * 180.24260 * 14 13 12 42 42 H 1.08004 * 120.43453 * 179.74936 * 15 14 13 43 43 H 0.97000 * 120.00140 * 180.02562 * 20 19 17 44 44 H 1.08001 * 120.33651 * 180.28741 * 26 6 5 45 45 H 1.07996 * 119.57336 * 179.70012 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3849 1.6353 0.0005 5 6 4.2836 0.5731 0.0005 6 6 5.6406 0.8402 0.0064 7 6 6.6467 -0.2817 0.0130 8 7 6.9791 -0.6476 -1.3661 9 6 7.8653 -1.6341 -1.6066 10 8 8.3884 -2.2208 -0.6791 11 7 8.1707 -1.9711 -2.8753 12 6 9.1637 -2.9147 -3.1252 13 6 9.5523 -3.1745 -4.4415 14 6 10.5451 -4.1104 -4.6881 15 6 11.1162 -4.7706 -3.6148 16 6 10.6778 -4.4689 -2.3138 17 6 11.2521 -5.1346 -1.2072 18 1 12.0249 -5.8728 -1.3627 19 6 10.8191 -4.8371 0.0908 20 7 9.8832 -3.9438 0.2790 21 14 11.5787 -5.7165 1.5533 22 1 12.7544 -4.9488 2.0366 23 1 10.5751 -5.8229 2.6427 24 1 12.0102 -7.0771 1.1434 25 7 9.7214 -3.5557 -2.1163 26 6 6.0551 2.1657 0.0001 27 6 5.1085 3.1702 0.0006 28 7 3.8198 2.8858 0.0006 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.3879 2.1185 0.0004 35 1 3.9264 -0.4461 0.0005 36 1 7.5495 0.0428 0.5305 37 1 6.2243 -1.1455 0.5263 38 1 6.5614 -0.1797 -2.1061 39 1 7.6989 -1.5561 -3.6143 40 1 9.0857 -2.6475 -5.2607 41 1 10.8629 -4.3232 -5.6981 42 1 11.8890 -5.5081 -3.7745 43 1 9.5835 -3.7374 1.1781 44 1 7.1076 2.4081 -0.0002 45 1 5.4265 4.2023 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467203366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:32 Heat of formation + Delta-G solvation = 74.819999 kcal Electronic energy + Delta-G solvation = -28349.445354 eV Core-core repulsion = 24368.070199 eV Total energy + Delta-G solvation = -3981.375155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.49543 -39.38107 -37.71990 -36.68666 -35.00759 -33.94066 -32.95243 -32.15601 -31.64673 -30.24451 -28.98257 -28.73841 -26.59193 -25.36690 -24.16674 -22.32138 -22.06691 -21.54491 -21.09316 -19.80172 -18.15305 -17.63287 -17.09741 -16.69326 -16.18089 -15.84678 -15.55622 -15.03768 -14.98190 -14.66729 -14.49150 -14.36286 -14.29230 -13.89577 -13.67628 -13.16699 -12.86624 -12.78879 -12.75044 -12.31160 -12.25736 -12.09771 -11.93545 -11.88787 -11.63395 -11.12005 -10.91499 -10.60983 -10.42612 -10.41268 -9.89654 -9.82261 -9.66473 -9.62111 -9.07510 -8.98966 -8.48380 -7.92084 -7.91342 -7.17585 -6.90547 -6.07095 -4.35025 1.08096 1.26544 2.87133 2.87874 3.16426 3.20231 3.22576 3.30643 3.31233 3.84138 4.10364 4.23775 4.40166 4.54881 4.59798 4.66980 4.85536 4.86690 4.96144 4.99525 5.14047 5.15442 5.38040 5.47841 5.54337 5.60372 5.66956 5.79061 5.90762 6.09030 6.13699 6.31333 6.44571 6.51431 6.64356 6.78585 6.83097 6.88645 6.94363 7.27442 7.31932 7.39200 7.65850 7.77652 7.85521 8.00131 8.21102 8.33552 8.68890 8.83939 9.10279 9.61265 10.31019 10.53820 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012388 B = 0.002508 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.639300 B =11160.094229 C =11884.209383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.122 3.878 3 N -0.729 5.729 4 C 0.397 3.603 5 C -0.220 4.220 6 C -0.013 4.013 7 C 0.185 3.815 8 N -0.755 5.755 9 C 0.664 3.336 10 O -0.461 6.461 11 N -0.672 5.672 12 C 0.387 3.613 13 C -0.358 4.358 14 C -0.036 4.036 15 C -0.307 4.307 16 C 0.271 3.729 17 C -0.425 4.425 18 H 0.082 0.918 19 C 0.056 3.944 20 N -0.648 5.648 21 Si 0.894 3.106 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.264 1.264 25 N -0.471 5.471 26 C -0.215 4.215 27 C 0.145 3.855 28 N -0.546 5.546 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.403 0.597 35 H 0.132 0.868 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.385 0.615 39 H 0.395 0.605 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.271 0.729 44 H 0.134 0.866 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.982 11.692 0.593 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.003 4.003 3 N -0.363 5.363 4 C 0.162 3.838 5 C -0.245 4.245 6 C -0.021 4.021 7 C 0.060 3.940 8 N -0.416 5.416 9 C 0.363 3.637 10 O -0.325 6.325 11 N -0.321 5.321 12 C 0.147 3.853 13 C -0.384 4.384 14 C -0.060 4.060 15 C -0.330 4.330 16 C 0.146 3.854 17 C -0.456 4.456 18 H 0.100 0.900 19 C -0.173 4.173 20 N -0.267 5.267 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.188 1.188 25 N -0.190 5.190 26 C -0.238 4.238 27 C -0.012 4.012 28 N -0.264 5.264 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.238 0.762 35 H 0.150 0.850 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.217 0.783 39 H 0.228 0.772 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.083 0.917 44 H 0.152 0.848 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.510 11.840 2.615 20.484 hybrid contribution 0.437 -0.384 -1.050 1.201 sum -16.073 11.455 1.564 19.800 Atomic orbital electron populations 1.21969 0.94218 1.03316 1.02649 1.21357 0.94745 0.82426 1.01756 1.44487 1.02631 1.07847 1.81316 1.18326 0.85460 0.89099 0.90908 1.21349 0.92771 0.99354 1.11043 1.20163 0.93566 0.94794 0.93596 1.19867 0.96015 0.94171 0.83937 1.45241 1.48871 1.40312 1.07131 1.16406 0.81256 0.81384 0.84684 1.91395 1.50149 1.50411 1.40570 1.42537 1.39487 1.43478 1.06584 1.18337 0.88205 0.88758 0.89985 1.20436 1.11144 1.12746 0.94119 1.20540 0.94292 0.94275 0.96901 1.21615 1.08540 1.08759 0.94106 1.18393 0.87820 0.88293 0.90927 1.19567 1.17476 1.18608 0.89909 0.90023 1.26190 0.95403 0.95540 1.00179 1.70343 1.15665 1.18311 1.22348 0.86547 0.79547 0.80693 0.81335 1.19716 1.20375 1.18827 1.68689 1.12058 1.10075 1.28144 1.21832 1.01338 0.92680 1.07985 1.22361 0.86734 0.99539 0.92609 1.67131 1.18441 1.20029 1.20753 0.91897 0.90565 0.91924 0.91782 0.91809 0.76191 0.85017 0.90545 0.90810 0.78266 0.77247 0.89195 0.88662 0.88618 0.91674 0.84818 0.82753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.77 10.03 37.16 0.37 -0.40 16 2 C 0.12 0.82 5.61 -4.04 -0.02 0.79 16 3 N -0.73 -6.27 5.73 -60.42 -0.35 -6.62 16 4 C 0.40 4.40 7.65 -155.02 -1.19 3.22 16 5 C -0.22 -2.44 9.03 -39.22 -0.35 -2.79 16 6 C -0.01 -0.15 5.28 -104.36 -0.55 -0.70 16 7 C 0.18 2.53 5.84 -5.19 -0.03 2.50 16 8 N -0.75 -11.23 5.55 -66.42 -0.37 -11.59 16 9 C 0.66 13.60 8.52 -86.92 -0.74 12.85 16 10 O -0.46 -11.74 12.11 5.30 0.06 -11.67 16 11 N -0.67 -13.44 5.39 -15.79 -0.09 -13.52 16 12 C 0.39 9.56 7.43 -155.00 -1.15 8.40 16 13 C -0.36 -8.13 9.96 -38.89 -0.39 -8.52 16 14 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 15 C -0.31 -7.82 9.83 -38.66 -0.38 -8.20 16 16 C 0.27 7.70 6.55 -85.00 -0.56 7.14 16 17 C -0.43 -11.81 9.14 -37.73 -0.34 -12.16 16 18 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 19 C 0.06 1.50 5.50 -17.35 -0.10 1.40 16 20 N -0.65 -18.12 8.99 55.55 0.50 -17.62 16 21 Si 0.89 19.42 29.56 -169.99 -5.02 14.39 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 25 N -0.47 -13.38 5.74 -10.26 -0.06 -13.44 16 26 C -0.22 -2.27 9.81 -39.42 -0.39 -2.66 16 27 C 0.14 1.48 11.17 -17.57 -0.20 1.28 16 28 N -0.55 -6.37 10.39 -12.44 -0.13 -6.50 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 32 H 0.06 0.45 7.93 -51.93 -0.41 0.03 16 33 H 0.06 0.44 7.93 -51.93 -0.41 0.03 16 34 H 0.40 3.09 8.60 -40.82 -0.35 2.74 16 35 H 0.13 1.36 6.71 -52.49 -0.35 1.01 16 36 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 37 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 38 H 0.39 4.69 8.48 -40.82 -0.35 4.34 16 39 H 0.39 6.10 8.71 -40.82 -0.36 5.74 16 40 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 41 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 43 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 44 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 45 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 381.68 15.07 5.75 5.75 Total: -1.00 -34.46 381.68 -12.11 -46.57 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -6.00 Total: 13.30 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -6.41 Total: 0.95 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -0.49 Total: -69.29 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.06 Total: -11.67 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.46 -12.11 -46.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467203366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.391 kcal (2) G-P(sol) polarization free energy of solvation -34.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds