Wall clock time and date at job start Wed Apr 1 2020 00:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47145 * 2 1 4 4 C 1.38998 * 120.00366 * 179.97438 * 3 2 1 5 5 C 1.39142 * 119.70339 * 0.02562 * 4 3 2 6 6 C 1.38300 * 119.09816 * 180.25327 * 5 4 3 7 7 C 1.50700 * 120.74680 * 179.71661 * 6 5 4 8 8 N 1.46503 * 109.46830 * 90.00102 * 7 6 5 9 9 C 1.34774 * 120.00066 * 179.97438 * 8 7 6 10 10 O 1.21578 * 119.99859 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00125 * 179.97438 * 9 8 7 12 12 C 1.39241 * 119.99937 * 174.85568 * 11 9 8 13 13 C 1.39685 * 119.57456 * 185.40778 * 12 11 9 14 14 C 1.38653 * 119.49322 * 179.73211 * 13 12 11 15 15 C 1.38345 * 118.67059 * 0.53091 * 14 13 12 16 16 C 1.40569 * 119.13310 * 359.73324 * 15 14 13 17 17 C 1.41335 * 119.79025 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99811 * 359.97438 * 17 16 15 19 19 C 1.40029 * 120.00219 * 179.97438 * 17 16 15 20 20 N 1.30733 * 119.99770 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99910 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47162 * 90.00123 * 21 19 17 23 23 H 1.48502 * 109.46808 * 210.00058 * 21 19 17 24 24 H 1.48502 * 109.47347 * 329.99604 * 21 19 17 25 25 N 1.31903 * 119.57807 * 5.68048 * 12 11 9 26 26 C 1.38882 * 118.50257 * 359.43637 * 6 5 4 27 27 C 1.38026 * 119.33070 * 0.58841 * 26 6 5 28 28 N 1.31968 * 120.85541 * 359.67405 * 27 26 6 29 29 H 1.08994 * 109.47212 * 59.99482 * 1 2 3 30 30 H 1.09003 * 109.47156 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47271 * 299.99865 * 1 2 3 32 32 H 1.08995 * 109.46971 * 240.00010 * 2 1 3 33 33 H 1.08998 * 109.47291 * 119.99781 * 2 1 3 34 34 H 0.97006 * 119.99999 * 0.02562 * 3 2 1 35 35 H 1.07998 * 120.44793 * 359.97438 * 5 4 3 36 36 H 1.09000 * 109.47206 * 209.99529 * 7 6 5 37 37 H 1.08993 * 109.47306 * 330.00158 * 7 6 5 38 38 H 0.97002 * 119.99705 * 359.97438 * 8 7 6 39 39 H 0.97000 * 119.99950 * 354.86429 * 11 9 8 40 40 H 1.07997 * 120.25337 * 359.97438 * 13 12 11 41 41 H 1.08000 * 120.66390 * 180.24260 * 14 13 12 42 42 H 1.08004 * 120.43453 * 179.74936 * 15 14 13 43 43 H 0.97000 * 120.00140 * 180.02562 * 20 19 17 44 44 H 1.08001 * 120.33651 * 180.28741 * 26 6 5 45 45 H 1.07996 * 119.57336 * 179.70012 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3849 1.6353 0.0005 5 6 4.2836 0.5731 0.0005 6 6 5.6406 0.8402 0.0064 7 6 6.6467 -0.2817 0.0130 8 7 6.9791 -0.6476 -1.3661 9 6 7.8653 -1.6341 -1.6066 10 8 8.3884 -2.2208 -0.6791 11 7 8.1707 -1.9711 -2.8753 12 6 9.1637 -2.9147 -3.1252 13 6 9.5523 -3.1745 -4.4415 14 6 10.5451 -4.1104 -4.6881 15 6 11.1162 -4.7706 -3.6148 16 6 10.6778 -4.4689 -2.3138 17 6 11.2521 -5.1346 -1.2072 18 1 12.0249 -5.8728 -1.3627 19 6 10.8191 -4.8371 0.0908 20 7 9.8832 -3.9438 0.2790 21 14 11.5787 -5.7165 1.5533 22 1 12.7544 -4.9488 2.0366 23 1 10.5751 -5.8229 2.6427 24 1 12.0102 -7.0771 1.1434 25 7 9.7214 -3.5557 -2.1163 26 6 6.0551 2.1657 0.0001 27 6 5.1085 3.1702 0.0006 28 7 3.8198 2.8858 0.0006 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.3879 2.1185 0.0004 35 1 3.9264 -0.4461 0.0005 36 1 7.5495 0.0428 0.5305 37 1 6.2243 -1.1455 0.5263 38 1 6.5614 -0.1797 -2.1061 39 1 7.6989 -1.5561 -3.6143 40 1 9.0857 -2.6475 -5.2607 41 1 10.8629 -4.3232 -5.6981 42 1 11.8890 -5.5081 -3.7745 43 1 9.5835 -3.7374 1.1781 44 1 7.1076 2.4081 -0.0002 45 1 5.4265 4.2023 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467203366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:31 Heat of formation + Delta-G solvation = 52.318216 kcal Electronic energy + Delta-G solvation = -28350.421104 eV Core-core repulsion = 24368.070199 eV Total energy + Delta-G solvation = -3982.350905 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.42867 -40.95787 -39.48579 -37.43557 -36.29089 -35.68839 -34.80764 -33.28671 -32.32428 -32.16005 -30.79917 -29.43349 -27.93253 -27.15016 -24.86846 -23.88953 -23.10567 -22.76975 -22.48928 -21.43225 -19.81501 -19.05183 -18.15977 -17.97484 -17.63606 -16.70853 -16.56937 -16.26604 -16.24766 -16.16366 -15.88160 -15.61997 -15.48401 -15.28926 -14.75277 -14.70744 -14.54663 -14.30148 -13.69393 -13.56640 -13.37479 -13.19057 -12.88129 -12.77385 -12.69920 -12.60009 -12.52551 -12.46867 -12.28739 -11.74248 -11.48995 -11.19793 -10.91619 -10.84400 -10.57719 -10.46931 -9.93192 -9.82684 -9.08559 -8.76111 -8.67124 -7.99375 -6.37881 0.19044 0.42873 0.99394 1.31074 1.41528 1.53419 1.56100 1.88900 2.19668 2.29122 2.57565 2.94134 3.06556 3.42447 3.52588 3.77792 4.04153 4.06652 4.10539 4.20808 4.29883 4.30110 4.38134 4.48497 4.62805 4.65486 4.77403 4.84723 4.89941 4.92861 4.94415 4.99565 5.03292 5.08979 5.22935 5.30303 5.46336 5.59439 5.64839 5.69818 5.87791 5.95118 6.04627 6.05669 6.33067 6.44666 6.61569 6.84897 7.10302 7.20797 7.24877 8.01385 8.40723 8.61366 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012388 B = 0.002508 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.639300 B =11160.094229 C =11884.209383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.118 3.882 3 N -0.723 5.723 4 C 0.389 3.611 5 C -0.226 4.226 6 C -0.015 4.015 7 C 0.191 3.809 8 N -0.731 5.731 9 C 0.660 3.340 10 O -0.513 6.513 11 N -0.661 5.661 12 C 0.365 3.635 13 C -0.346 4.346 14 C -0.034 4.034 15 C -0.331 4.331 16 C 0.236 3.764 17 C -0.465 4.465 18 H 0.085 0.915 19 C 0.009 3.991 20 N -0.683 5.683 21 Si 0.974 3.026 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.257 1.257 25 N -0.506 5.506 26 C -0.218 4.218 27 C 0.146 3.854 28 N -0.561 5.561 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.407 0.593 35 H 0.135 0.865 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.402 0.598 39 H 0.417 0.583 40 H 0.131 0.869 41 H 0.137 0.863 42 H 0.104 0.896 43 H 0.269 0.731 44 H 0.144 0.856 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.063 12.757 -0.439 21.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.006 4.006 3 N -0.357 5.357 4 C 0.153 3.847 5 C -0.252 4.252 6 C -0.024 4.024 7 C 0.067 3.933 8 N -0.391 5.391 9 C 0.358 3.642 10 O -0.381 6.381 11 N -0.311 5.311 12 C 0.125 3.875 13 C -0.372 4.372 14 C -0.058 4.058 15 C -0.354 4.354 16 C 0.111 3.889 17 C -0.496 4.496 18 H 0.103 0.897 19 C -0.216 4.216 20 N -0.302 5.302 21 Si 0.795 3.205 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.180 1.180 25 N -0.225 5.225 26 C -0.241 4.241 27 C -0.011 4.011 28 N -0.280 5.280 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.244 0.756 35 H 0.153 0.847 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.238 0.762 39 H 0.254 0.746 40 H 0.149 0.851 41 H 0.155 0.845 42 H 0.122 0.878 43 H 0.080 0.920 44 H 0.161 0.839 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -17.667 12.956 1.522 21.961 hybrid contribution 0.660 -0.600 -0.901 1.268 sum -17.007 12.355 0.621 21.030 Atomic orbital electron populations 1.21931 0.92491 1.04069 1.02982 1.21482 0.96147 0.81445 1.01503 1.44622 1.01880 1.08793 1.80384 1.18526 0.86408 0.88969 0.90795 1.21372 0.92658 0.99708 1.11415 1.19924 0.93127 0.94415 0.94887 1.19786 0.96111 0.94560 0.82824 1.44928 1.47186 1.38619 1.08390 1.16648 0.81492 0.81811 0.84222 1.91387 1.52235 1.52409 1.42042 1.42369 1.38683 1.42611 1.07449 1.18834 0.88909 0.89240 0.90515 1.20910 1.10085 1.11765 0.94400 1.21019 0.93443 0.93154 0.98169 1.21798 1.09579 1.09974 0.94050 1.18887 0.88572 0.89004 0.92474 1.19881 1.18761 1.19922 0.91070 0.89708 1.27035 0.95690 0.96140 1.02766 1.70547 1.17164 1.19896 1.22616 0.85350 0.78504 0.79475 0.77202 1.19197 1.19853 1.18024 1.68650 1.12779 1.10878 1.30191 1.21950 1.02055 0.92238 1.07893 1.22822 0.86180 1.00765 0.91344 1.67221 1.19175 1.20226 1.21332 0.91538 0.89592 0.91582 0.91998 0.92078 0.75638 0.84710 0.91681 0.92057 0.76238 0.74621 0.85100 0.84517 0.87811 0.92023 0.83855 0.79986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 10.03 71.98 0.72 -0.51 16 2 C 0.12 1.46 5.61 86.38 0.48 1.95 16 3 N -0.72 -11.59 5.73 -345.08 -1.98 -13.57 16 4 C 0.39 8.19 7.65 133.07 1.02 9.20 16 5 C -0.23 -4.86 9.03 22.50 0.20 -4.66 16 6 C -0.02 -0.34 5.28 -19.70 -0.10 -0.44 16 7 C 0.19 5.31 5.84 85.63 0.50 5.81 16 8 N -0.73 -21.44 5.55 -482.32 -2.68 -24.12 16 9 C 0.66 27.25 8.52 179.06 1.53 28.77 16 10 O -0.51 -27.09 12.11 -3.96 -0.05 -27.14 16 11 N -0.66 -25.88 5.39 -322.13 -1.74 -27.62 16 12 C 0.36 17.91 7.43 133.26 0.99 18.90 16 13 C -0.35 -14.88 9.96 22.72 0.23 -14.66 16 14 C -0.03 -1.48 10.15 22.39 0.23 -1.25 16 15 C -0.33 -16.93 9.83 22.86 0.22 -16.70 16 16 C 0.24 13.84 6.55 40.19 0.26 14.11 16 17 C -0.47 -26.88 9.14 23.47 0.21 -26.67 16 18 H 0.08 4.59 7.85 -2.91 -0.02 4.57 16 19 C 0.01 0.52 5.50 85.29 0.47 0.99 16 20 N -0.68 -39.91 8.99 21.84 0.20 -39.72 16 21 Si 0.97 41.26 29.56 68.60 2.03 43.29 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 25 N -0.51 -29.49 5.74 -186.37 -1.07 -30.55 16 26 C -0.22 -4.31 9.81 22.37 0.22 -4.09 16 27 C 0.15 2.71 11.17 84.62 0.95 3.65 16 28 N -0.56 -12.22 10.39 -193.27 -2.01 -14.23 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.06 0.80 7.93 -2.39 -0.02 0.78 16 33 H 0.06 0.80 7.93 -2.39 -0.02 0.78 16 34 H 0.41 5.70 8.60 -92.70 -0.80 4.90 16 35 H 0.14 2.74 6.71 -2.91 -0.02 2.72 16 36 H 0.06 1.97 8.10 -2.39 -0.02 1.96 16 37 H 0.06 1.87 8.10 -2.39 -0.02 1.85 16 38 H 0.40 9.19 8.48 -92.71 -0.79 8.40 16 39 H 0.42 11.98 8.71 -92.71 -0.81 11.17 16 40 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 41 H 0.14 4.79 8.06 -2.91 -0.02 4.76 16 42 H 0.10 4.95 8.06 -2.91 -0.02 4.92 16 43 H 0.27 14.83 8.29 -92.71 -0.77 14.06 16 44 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 45 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -77.76 381.68 -0.50 -78.25 By element: Atomic # 1 Polarization: 42.34 SS G_CDS: -1.33 Total: 41.01 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 8.13 Total: 14.40 kcal Atomic # 7 Polarization: -140.54 SS G_CDS: -9.27 Total: -149.81 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.05 Total: -27.14 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -77.76 -0.50 -78.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467203366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.571 kcal (2) G-P(sol) polarization free energy of solvation -77.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds