Wall clock time and date at job start Wed Apr 1 2020 01:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47111 * 2 1 4 4 C 1.36936 * 119.99577 * 264.28558 * 3 2 1 5 5 H 1.07997 * 119.99958 * 188.63796 * 4 3 2 6 6 C 1.38810 * 119.99876 * 8.64446 * 4 3 2 7 7 N 1.31617 * 120.00601 * 24.60089 * 6 4 3 8 8 Si 1.86812 * 119.99816 * 204.60096 * 6 4 3 9 9 H 1.48497 * 109.46735 * 85.02145 * 8 6 4 10 10 H 1.48498 * 109.47196 * 205.02469 * 8 6 4 11 11 H 1.48500 * 109.46649 * 325.02439 * 8 6 4 12 12 C 1.46496 * 120.00196 * 84.28765 * 3 2 1 13 13 C 1.52995 * 109.47349 * 269.99770 * 12 3 2 14 14 C 1.52999 * 109.47267 * 179.97438 * 13 12 3 15 15 N 1.46503 * 109.47291 * 180.02562 * 14 13 12 16 16 C 1.34769 * 119.99930 * 180.02562 * 15 14 13 17 17 O 1.21275 * 120.00414 * 0.27011 * 16 15 14 18 18 C 1.50707 * 119.99694 * 179.97438 * 16 15 14 19 19 C 1.53006 * 109.46811 * 179.97438 * 18 16 15 20 20 N 1.46499 * 109.46501 * 179.97438 * 19 18 16 21 21 C 1.36308 * 121.38597 * 269.73838 * 20 19 18 22 22 C 1.50706 * 121.64263 * 0.02708 * 21 20 19 23 23 C 1.32561 * 116.71390 * 179.79497 * 21 20 19 24 24 S 1.77234 * 105.31653 * 0.43058 * 23 21 20 25 25 C 1.34248 * 121.37891 * 90.03519 * 20 19 18 26 26 O 1.21833 * 127.05838 * 359.92654 * 25 20 19 27 27 H 1.09008 * 109.47057 * 300.00049 * 1 2 3 28 28 H 1.08995 * 109.47127 * 59.99842 * 1 2 3 29 29 H 1.09001 * 109.47245 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47254 * 239.99451 * 2 1 3 31 31 H 1.09009 * 109.46801 * 119.99695 * 2 1 3 32 32 H 0.97000 * 120.00077 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47016 * 149.99642 * 12 3 2 34 34 H 1.09001 * 109.47118 * 30.00618 * 12 3 2 35 35 H 1.09006 * 109.46958 * 60.00287 * 13 12 3 36 36 H 1.08996 * 109.47078 * 300.00164 * 13 12 3 37 37 H 1.09006 * 109.46779 * 60.00322 * 14 13 12 38 38 H 1.08996 * 109.47324 * 300.00159 * 14 13 12 39 39 H 0.97006 * 119.99846 * 359.97438 * 15 14 13 40 40 H 1.08996 * 109.47088 * 299.99720 * 18 16 15 41 41 H 1.08999 * 109.47081 * 60.00377 * 18 16 15 42 42 H 1.08996 * 109.47400 * 299.99939 * 19 18 16 43 43 H 1.08999 * 109.46656 * 60.00525 * 19 18 16 44 44 H 1.08999 * 109.46855 * 89.99973 * 22 21 20 45 45 H 1.09001 * 109.47294 * 209.99822 * 22 21 20 46 46 H 1.09001 * 109.47089 * 329.99968 * 22 21 20 47 47 H 1.07999 * 127.34218 * 180.16722 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3579 1.9873 -1.1801 5 1 2.8471 2.9501 -1.1714 6 6 2.0731 1.3643 -2.3874 7 7 1.0959 0.4857 -2.4602 8 14 3.0771 1.7728 -3.9089 9 1 4.3046 0.9375 -3.9308 10 1 2.2690 1.4973 -5.1239 11 1 3.4557 3.2085 -3.8812 12 6 2.1435 2.1140 1.2624 13 6 0.8339 2.8475 1.5583 14 6 0.9643 3.6122 2.8770 15 7 -0.2899 4.3142 3.1607 16 6 -0.4077 5.0585 4.2780 17 8 0.5261 5.1512 5.0462 18 6 -1.6978 5.7810 4.5694 19 6 -1.5673 6.5457 5.8883 20 7 -2.8211 7.2485 6.1712 21 6 -3.0354 8.5218 5.7345 22 6 -1.9966 9.2703 4.9395 23 6 -4.2043 9.0676 6.0393 24 16 -5.0700 7.8315 6.9689 25 6 -3.8045 6.6673 6.8765 26 8 -3.8024 5.5459 7.3528 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 0.8972 0.0500 -3.3038 33 1 2.9552 2.8371 1.1838 34 1 2.3580 1.4134 2.0694 35 1 0.0221 2.1243 1.6369 36 1 0.6195 3.5481 0.7513 37 1 1.7762 4.3354 2.7988 38 1 1.1785 2.9114 3.6838 39 1 -1.0353 4.2438 2.5439 40 1 -1.9121 6.4817 3.7625 41 1 -2.5095 5.0579 4.6480 42 1 -1.3532 5.8447 6.6951 43 1 -0.7555 7.2688 5.8101 44 1 -2.1489 9.0840 3.8764 45 1 -2.0872 10.3383 5.1379 46 1 -1.0025 8.9299 5.2293 47 1 -4.5530 10.0564 5.7804 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479845292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:56 Heat of formation + Delta-G solvation = -19.080243 kcal Electronic energy + Delta-G solvation = -26845.386873 eV Core-core repulsion = 22963.091099 eV Total energy + Delta-G solvation = -3882.295775 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.45992 -39.70222 -37.93119 -36.63815 -35.03858 -33.79175 -32.21991 -31.61166 -30.42215 -29.10879 -28.40504 -25.85511 -24.80604 -23.64460 -23.01537 -21.16551 -20.84676 -20.48128 -19.94812 -18.45797 -17.81678 -16.94410 -16.72925 -16.47743 -16.03191 -15.74534 -15.34719 -14.88212 -14.83878 -14.56424 -14.16935 -14.09911 -13.80324 -13.58476 -13.39218 -13.19927 -13.00357 -12.71145 -12.66159 -11.89040 -11.84260 -11.75068 -11.60949 -11.51281 -11.44373 -11.32818 -10.90108 -10.74112 -10.45470 -10.41414 -10.34756 -10.14491 -9.90228 -9.78872 -9.59869 -9.36212 -9.04402 -8.37800 -8.34527 -6.91792 -5.78767 -3.09910 0.58463 0.97571 1.40678 1.76339 2.31032 2.48913 3.16689 3.37454 3.45224 3.45934 4.04408 4.31271 4.33092 4.48203 4.57318 4.67562 4.86180 4.92629 5.02119 5.07197 5.16622 5.22287 5.25455 5.32356 5.44825 5.50575 5.71118 5.75036 5.84486 6.06240 6.14417 6.33388 6.37432 6.49352 6.58453 6.72106 6.84126 6.91535 6.94449 7.09296 7.15904 7.43239 7.64794 7.75878 8.07429 8.09532 8.34825 9.22555 9.85757 10.30746 11.25077 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019335 B = 0.001793 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.827824 B =15612.809561 C =15926.939137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.166 3.834 3 N -0.597 5.597 4 C -0.248 4.248 5 H 0.073 0.927 6 C -0.004 4.004 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.289 1.289 10 H -0.294 1.294 11 H -0.283 1.283 12 C 0.156 3.844 13 C -0.155 4.155 14 C 0.119 3.881 15 N -0.722 5.722 16 C 0.516 3.484 17 O -0.546 6.546 18 C -0.159 4.159 19 C 0.116 3.884 20 N -0.533 5.533 21 C 0.104 3.896 22 C -0.105 4.105 23 C -0.240 4.240 24 S -0.002 6.002 25 C 0.479 3.521 26 O -0.469 6.469 27 H 0.012 0.988 28 H 0.090 0.910 29 H 0.018 0.982 30 H 0.087 0.913 31 H 0.002 0.998 32 H 0.251 0.749 33 H 0.046 0.954 34 H 0.040 0.960 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.402 0.598 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.278 18.116 15.478 25.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 N -0.318 5.318 4 C -0.377 4.377 5 H 0.091 0.909 6 C -0.201 4.201 7 N -0.543 5.543 8 Si 0.727 3.273 9 H -0.216 1.216 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.028 3.972 13 C -0.196 4.196 14 C -0.005 4.005 15 N -0.373 5.373 16 C 0.301 3.699 17 O -0.424 6.424 18 C -0.200 4.200 19 C -0.009 4.009 20 N -0.254 5.254 21 C -0.007 4.007 22 C -0.164 4.164 23 C -0.379 4.379 24 S 0.241 5.759 25 C 0.161 3.839 26 O -0.348 6.348 27 H 0.031 0.969 28 H 0.108 0.892 29 H 0.037 0.963 30 H 0.105 0.895 31 H 0.020 0.980 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.236 0.764 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.106 0.894 45 H 0.110 0.890 46 H 0.099 0.901 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -10.827 17.272 16.762 26.392 hybrid contribution 1.078 0.183 -1.837 2.138 sum -9.749 17.454 14.925 24.949 Atomic orbital electron populations 1.22414 0.99387 0.98174 1.00963 1.20804 0.92446 0.84499 0.98183 1.44257 1.75754 1.10230 1.01583 1.19274 1.31243 1.03615 0.83583 0.90916 1.24723 0.97993 1.00078 0.97321 1.70149 1.27304 1.31941 1.24887 0.86386 0.80371 0.77806 0.82781 1.21624 1.22013 1.20820 1.20665 0.93590 0.94173 0.88787 1.22729 1.02982 0.99733 0.94146 1.21552 0.85011 0.95415 0.98519 1.46171 1.17727 1.49703 1.23683 1.20219 0.88921 0.79343 0.81382 1.90718 1.40819 1.63188 1.47659 1.21982 0.97811 1.01113 0.99080 1.21639 0.83759 0.97420 0.98056 1.46160 1.17880 1.13164 1.48175 1.19495 0.97621 0.84811 0.98764 1.20850 0.96054 1.00084 0.99392 1.24907 0.96596 1.04759 1.11591 1.85221 1.21848 1.08979 1.59860 1.21646 0.87443 0.91733 0.83099 1.90999 1.76818 1.17253 1.49730 0.96871 0.89173 0.96299 0.89494 0.97963 0.93830 0.93541 0.94206 0.91581 0.91446 0.91693 0.91842 0.76395 0.88216 0.88185 0.87724 0.87733 0.89392 0.89018 0.90145 0.79102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.58 37.16 0.36 -3.00 16 2 C 0.17 3.91 5.64 -4.04 -0.02 3.89 16 3 N -0.60 -14.18 2.54 -173.24 -0.44 -14.62 16 4 C -0.25 -6.47 9.70 -15.06 -0.15 -6.62 16 5 H 0.07 1.87 7.93 -52.49 -0.42 1.45 16 6 C 0.00 -0.11 4.91 -17.43 -0.09 -0.20 16 7 N -0.90 -24.44 8.54 55.49 0.47 -23.97 16 8 Si 0.90 21.11 29.62 -169.99 -5.04 16.07 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.16 3.00 5.71 -4.05 -0.02 2.98 16 13 C -0.16 -2.56 5.53 -26.73 -0.15 -2.71 16 14 C 0.12 1.67 5.67 -4.04 -0.02 1.65 16 15 N -0.72 -8.60 5.56 -60.29 -0.33 -8.94 16 16 C 0.52 6.18 7.83 -10.99 -0.09 6.09 16 17 O -0.55 -8.40 15.98 5.56 0.09 -8.31 16 18 C -0.16 -1.36 6.02 -27.88 -0.17 -1.53 16 19 C 0.12 1.03 4.56 -4.04 -0.02 1.01 16 20 N -0.53 -4.60 2.60 -117.28 -0.31 -4.91 16 21 C 0.10 0.64 6.59 -82.51 -0.54 0.09 16 22 C -0.10 -0.35 9.70 36.01 0.35 -0.01 16 23 C -0.24 -1.35 11.25 28.82 0.32 -1.03 16 24 S 0.00 -0.02 22.97 -107.50 -2.47 -2.49 16 25 C 0.48 5.32 8.27 53.82 0.45 5.77 16 26 O -0.47 -6.84 17.55 5.07 0.09 -6.75 16 27 H 0.01 0.26 5.98 -51.92 -0.31 -0.05 16 28 H 0.09 2.29 6.28 -51.93 -0.33 1.97 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 2.30 5.87 -51.93 -0.31 1.99 16 31 H 0.00 0.05 7.98 -51.92 -0.41 -0.37 16 32 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 33 H 0.05 0.87 8.03 -51.93 -0.42 0.46 16 34 H 0.04 0.72 7.95 -51.93 -0.41 0.31 16 35 H 0.07 1.15 5.93 -51.93 -0.31 0.84 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.40 4.02 8.47 -40.82 -0.35 3.68 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.10 1.14 7.76 -51.93 -0.40 0.74 16 43 H 0.10 0.78 6.07 -51.93 -0.32 0.47 16 44 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.09 0.15 8.10 -51.93 -0.42 -0.27 16 46 H 0.08 0.30 6.18 -51.93 -0.32 -0.02 16 47 H 0.19 0.51 8.06 -52.49 -0.42 0.09 16 LS Contribution 393.54 15.07 5.93 5.93 Total: -1.00 -31.89 393.54 -9.02 -40.91 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.23 Total: 0.66 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 0.21 Total: 6.40 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.61 Total: -52.43 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: 0.18 Total: -15.06 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.04 Total: 16.07 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.47 Total: -2.49 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.89 -9.02 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479845292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.831 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds