Wall clock time and date at job start Wed Apr 1 2020 01:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47111 * 2 1 4 4 C 1.36936 * 119.99577 * 264.28558 * 3 2 1 5 5 H 1.07997 * 119.99958 * 188.63796 * 4 3 2 6 6 C 1.38810 * 119.99876 * 8.64446 * 4 3 2 7 7 N 1.31617 * 120.00601 * 24.60089 * 6 4 3 8 8 Si 1.86812 * 119.99816 * 204.60096 * 6 4 3 9 9 H 1.48497 * 109.46735 * 85.02145 * 8 6 4 10 10 H 1.48498 * 109.47196 * 205.02469 * 8 6 4 11 11 H 1.48500 * 109.46649 * 325.02439 * 8 6 4 12 12 C 1.46496 * 120.00196 * 84.28765 * 3 2 1 13 13 C 1.52995 * 109.47349 * 269.99770 * 12 3 2 14 14 C 1.52999 * 109.47267 * 179.97438 * 13 12 3 15 15 N 1.46503 * 109.47291 * 180.02562 * 14 13 12 16 16 C 1.34769 * 119.99930 * 180.02562 * 15 14 13 17 17 O 1.21275 * 120.00414 * 0.27011 * 16 15 14 18 18 C 1.50707 * 119.99694 * 179.97438 * 16 15 14 19 19 C 1.53006 * 109.46811 * 179.97438 * 18 16 15 20 20 N 1.46499 * 109.46501 * 179.97438 * 19 18 16 21 21 C 1.36308 * 121.38597 * 269.73838 * 20 19 18 22 22 C 1.50706 * 121.64263 * 0.02708 * 21 20 19 23 23 C 1.32561 * 116.71390 * 179.79497 * 21 20 19 24 24 S 1.77234 * 105.31653 * 0.43058 * 23 21 20 25 25 C 1.34248 * 121.37891 * 90.03519 * 20 19 18 26 26 O 1.21833 * 127.05838 * 359.92654 * 25 20 19 27 27 H 1.09008 * 109.47057 * 300.00049 * 1 2 3 28 28 H 1.08995 * 109.47127 * 59.99842 * 1 2 3 29 29 H 1.09001 * 109.47245 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47254 * 239.99451 * 2 1 3 31 31 H 1.09009 * 109.46801 * 119.99695 * 2 1 3 32 32 H 0.97000 * 120.00077 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47016 * 149.99642 * 12 3 2 34 34 H 1.09001 * 109.47118 * 30.00618 * 12 3 2 35 35 H 1.09006 * 109.46958 * 60.00287 * 13 12 3 36 36 H 1.08996 * 109.47078 * 300.00164 * 13 12 3 37 37 H 1.09006 * 109.46779 * 60.00322 * 14 13 12 38 38 H 1.08996 * 109.47324 * 300.00159 * 14 13 12 39 39 H 0.97006 * 119.99846 * 359.97438 * 15 14 13 40 40 H 1.08996 * 109.47088 * 299.99720 * 18 16 15 41 41 H 1.08999 * 109.47081 * 60.00377 * 18 16 15 42 42 H 1.08996 * 109.47400 * 299.99939 * 19 18 16 43 43 H 1.08999 * 109.46656 * 60.00525 * 19 18 16 44 44 H 1.08999 * 109.46855 * 89.99973 * 22 21 20 45 45 H 1.09001 * 109.47294 * 209.99822 * 22 21 20 46 46 H 1.09001 * 109.47089 * 329.99968 * 22 21 20 47 47 H 1.07999 * 127.34218 * 180.16722 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3579 1.9873 -1.1801 5 1 2.8471 2.9501 -1.1714 6 6 2.0731 1.3643 -2.3874 7 7 1.0959 0.4857 -2.4602 8 14 3.0771 1.7728 -3.9089 9 1 4.3046 0.9375 -3.9308 10 1 2.2690 1.4973 -5.1239 11 1 3.4557 3.2085 -3.8812 12 6 2.1435 2.1140 1.2624 13 6 0.8339 2.8475 1.5583 14 6 0.9643 3.6122 2.8770 15 7 -0.2899 4.3142 3.1607 16 6 -0.4077 5.0585 4.2780 17 8 0.5261 5.1512 5.0462 18 6 -1.6978 5.7810 4.5694 19 6 -1.5673 6.5457 5.8883 20 7 -2.8211 7.2485 6.1712 21 6 -3.0354 8.5218 5.7345 22 6 -1.9966 9.2703 4.9395 23 6 -4.2043 9.0676 6.0393 24 16 -5.0700 7.8315 6.9689 25 6 -3.8045 6.6673 6.8765 26 8 -3.8024 5.5459 7.3528 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 0.8972 0.0500 -3.3038 33 1 2.9552 2.8371 1.1838 34 1 2.3580 1.4134 2.0694 35 1 0.0221 2.1243 1.6369 36 1 0.6195 3.5481 0.7513 37 1 1.7762 4.3354 2.7988 38 1 1.1785 2.9114 3.6838 39 1 -1.0353 4.2438 2.5439 40 1 -1.9121 6.4817 3.7625 41 1 -2.5095 5.0579 4.6480 42 1 -1.3532 5.8447 6.6951 43 1 -0.7555 7.2688 5.8101 44 1 -2.1489 9.0840 3.8764 45 1 -2.0872 10.3383 5.1379 46 1 -1.0025 8.9299 5.2293 47 1 -4.5530 10.0564 5.7804 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479845292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:55 Heat of formation + Delta-G solvation = -38.836831 kcal Electronic energy + Delta-G solvation = -26846.243583 eV Core-core repulsion = 22963.091099 eV Total energy + Delta-G solvation = -3883.152484 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.14331 -40.70858 -38.71619 -38.29931 -36.33355 -34.49904 -33.76139 -32.42854 -31.95117 -30.68099 -29.13193 -27.07884 -25.93877 -24.95964 -24.00827 -22.60712 -22.10691 -21.47492 -21.12423 -19.05919 -18.70888 -18.63198 -17.64248 -17.37039 -17.03350 -16.98015 -16.48626 -16.17539 -15.94736 -15.46039 -15.33951 -14.98870 -14.72887 -14.56599 -14.45661 -14.33620 -14.16110 -13.75989 -13.68928 -13.30835 -13.17070 -13.09038 -12.89521 -12.60937 -12.54705 -12.42151 -12.28139 -12.14419 -12.10311 -12.06113 -11.66310 -11.36568 -11.26282 -11.17189 -11.06746 -10.61177 -10.32701 -10.12202 -8.97277 -8.81760 -7.78039 -5.09345 -0.13148 0.37023 0.86131 1.10497 1.49166 1.53219 1.53667 1.58750 1.64565 2.23801 2.56732 3.31259 3.49332 3.59588 3.65929 3.67884 3.88787 4.11848 4.18277 4.26271 4.31791 4.43160 4.48505 4.56776 4.64791 4.67509 4.77120 4.78151 4.79830 4.82987 4.91963 5.02061 5.04675 5.20488 5.26473 5.30650 5.34109 5.40768 5.55358 5.65187 5.73232 5.82849 6.18045 6.21854 6.38976 6.47609 7.14370 7.24740 7.96702 8.37000 9.23826 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019335 B = 0.001793 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.827824 B =15612.809561 C =15926.939137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 N -0.612 5.612 4 C -0.253 4.253 5 H 0.073 0.927 6 C -0.052 4.052 7 N -0.916 5.916 8 Si 0.952 3.048 9 H -0.293 1.293 10 H -0.300 1.300 11 H -0.274 1.274 12 C 0.150 3.850 13 C -0.133 4.133 14 C 0.131 3.869 15 N -0.718 5.718 16 C 0.518 3.482 17 O -0.581 6.581 18 C -0.145 4.145 19 C 0.118 3.882 20 N -0.529 5.529 21 C 0.091 3.909 22 C -0.102 4.102 23 C -0.222 4.222 24 S -0.004 6.004 25 C 0.459 3.541 26 O -0.522 6.522 27 H 0.029 0.971 28 H 0.058 0.942 29 H 0.029 0.971 30 H 0.055 0.945 31 H 0.021 0.979 32 H 0.245 0.755 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.413 0.587 40 H 0.131 0.869 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.121 0.879 44 H 0.100 0.900 45 H 0.115 0.885 46 H 0.077 0.923 47 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.623 20.682 15.431 27.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.041 3.959 3 N -0.334 5.334 4 C -0.383 4.383 5 H 0.091 0.909 6 C -0.247 4.247 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.221 1.221 10 H -0.227 1.227 11 H -0.200 1.200 12 C 0.023 3.977 13 C -0.174 4.174 14 C 0.007 3.993 15 N -0.369 5.369 16 C 0.305 3.695 17 O -0.461 6.461 18 C -0.186 4.186 19 C -0.007 4.007 20 N -0.249 5.249 21 C -0.018 4.018 22 C -0.161 4.161 23 C -0.359 4.359 24 S 0.239 5.761 25 C 0.143 3.857 26 O -0.406 6.406 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.249 0.751 40 H 0.149 0.851 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.138 0.862 44 H 0.118 0.882 45 H 0.133 0.867 46 H 0.095 0.905 47 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -11.183 19.901 16.709 28.290 hybrid contribution 1.181 -0.529 -1.763 2.187 sum -10.002 19.372 14.946 26.433 Atomic orbital electron populations 1.22193 0.98520 0.98621 1.00157 1.20696 0.93139 0.84615 0.97444 1.44408 1.76073 1.10592 1.02349 1.19497 1.30651 1.03538 0.84597 0.90928 1.25336 0.98946 1.00825 0.99604 1.70303 1.28228 1.32983 1.24835 0.85493 0.78639 0.77763 0.79847 1.22074 1.22689 1.19958 1.20832 0.94959 0.94527 0.87355 1.22350 1.00990 0.99109 0.94943 1.21242 0.86021 0.95223 0.96838 1.46057 1.17357 1.49402 1.24097 1.20689 0.89507 0.78788 0.80526 1.90707 1.42370 1.64374 1.48692 1.21898 0.95532 1.01276 0.99883 1.21556 0.84430 0.97476 0.97219 1.46178 1.17143 1.14000 1.47583 1.20011 0.98761 0.83794 0.99225 1.20979 0.94707 1.00957 0.99463 1.25434 0.95491 1.05078 1.09893 1.85234 1.21156 1.09422 1.60269 1.22041 0.88556 0.91722 0.83401 1.90955 1.78324 1.19370 1.51963 0.95172 0.92268 0.95230 0.92669 0.96132 0.94572 0.93216 0.92832 0.92217 0.92750 0.91797 0.92183 0.75100 0.85081 0.88392 0.90493 0.86154 0.88171 0.86694 0.90465 0.75536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.99 9.58 71.98 0.69 -5.30 16 2 C 0.17 7.79 5.64 86.38 0.49 8.28 16 3 N -0.61 -28.74 2.54 -702.02 -1.78 -30.52 16 4 C -0.25 -13.13 9.70 84.03 0.82 -12.31 16 5 H 0.07 3.69 7.93 -2.91 -0.02 3.67 16 6 C -0.05 -2.78 4.91 84.86 0.42 -2.37 16 7 N -0.92 -50.59 8.54 21.65 0.18 -50.41 16 8 Si 0.95 43.62 29.62 68.60 2.03 45.65 16 9 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 10 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 C 0.15 5.58 5.71 86.38 0.49 6.07 16 13 C -0.13 -4.23 5.53 30.59 0.17 -4.06 16 14 C 0.13 3.50 5.67 86.38 0.49 3.99 16 15 N -0.72 -15.91 5.56 -463.06 -2.57 -18.49 16 16 C 0.52 11.72 7.83 87.66 0.69 12.41 16 17 O -0.58 -17.48 15.98 -3.01 -0.05 -17.53 16 18 C -0.15 -2.26 6.02 29.85 0.18 -2.08 16 19 C 0.12 2.01 4.56 86.38 0.39 2.40 16 20 N -0.53 -8.56 2.60 -643.41 -1.67 -10.23 16 21 C 0.09 0.87 6.59 40.72 0.27 1.13 16 22 C -0.10 -0.31 9.70 71.24 0.69 0.38 16 23 C -0.22 -1.77 11.25 66.67 0.75 -1.02 16 24 S 0.00 -0.06 22.97 -56.49 -1.30 -1.36 16 25 C 0.46 10.30 8.27 129.87 1.07 11.37 16 26 O -0.52 -16.11 17.55 -4.77 -0.08 -16.19 16 27 H 0.03 1.19 5.98 -2.38 -0.01 1.17 16 28 H 0.06 3.01 6.28 -2.39 -0.02 3.00 16 29 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 2.94 5.87 -2.39 -0.01 2.93 16 31 H 0.02 0.87 7.98 -2.38 -0.02 0.85 16 32 H 0.24 13.35 8.31 -92.71 -0.77 12.58 16 33 H 0.05 1.81 8.03 -2.39 -0.02 1.79 16 34 H 0.05 1.84 7.95 -2.39 -0.02 1.82 16 35 H 0.06 1.98 5.93 -2.38 -0.01 1.97 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.41 7.44 8.47 -92.70 -0.79 6.66 16 40 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.08 1.75 7.76 -2.39 -0.02 1.74 16 43 H 0.12 1.63 6.07 -2.39 -0.01 1.62 16 44 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 45 H 0.11 -0.15 8.10 -2.39 -0.02 -0.17 16 46 H 0.08 0.33 6.18 -2.39 -0.01 0.31 16 47 H 0.23 0.10 8.06 -2.91 -0.02 0.08 16 Total: -1.00 -70.80 393.54 2.56 -68.23 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.20 Total: 11.94 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 7.60 Total: 18.90 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -5.84 Total: -109.64 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.13 Total: -33.72 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -1.30 Total: -1.36 kcal Total: -70.80 2.56 -68.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479845292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.395 kcal (2) G-P(sol) polarization free energy of solvation -70.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds