Wall clock time and date at job start Wed Apr 1 2020 00:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46760 * 124.34797 * 269.72831 * 3 2 1 5 5 C 1.54661 * 105.37765 * 162.85705 * 4 3 2 6 6 C 1.54622 * 101.68924 * 25.76060 * 5 4 3 7 7 H 1.09003 * 110.48881 * 216.30551 * 6 5 4 8 8 N 1.46903 * 110.48442 * 93.66574 * 6 5 4 9 9 C 1.47846 * 111.00282 * 299.61510 * 8 6 5 10 10 C 1.54905 * 104.79875 * 213.63701 * 9 8 6 11 11 C 1.55146 * 101.65265 * 37.06903 * 10 9 8 12 12 H 1.08997 * 110.70685 * 82.72923 * 11 10 9 13 13 N 1.46495 * 110.70352 * 205.96773 * 11 10 9 14 14 C 1.34783 * 119.99926 * 268.59365 * 13 11 10 15 15 O 1.21281 * 119.99537 * 0.02562 * 14 13 11 16 16 C 1.50697 * 119.99931 * 179.97438 * 14 13 11 17 17 S 1.81003 * 109.47030 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00228 * 180.02562 * 17 16 14 19 19 H 1.07993 * 119.99590 * 0.02562 * 18 17 16 20 20 C 1.38794 * 119.99989 * 180.02562 * 18 17 16 21 21 N 1.31626 * 120.00116 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00154 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47542 * 89.99770 * 22 20 18 24 24 H 1.48500 * 109.47236 * 210.00038 * 22 20 18 25 25 H 1.48504 * 109.46930 * 329.99667 * 22 20 18 26 26 C 1.47442 * 111.00035 * 178.76981 * 8 6 5 27 27 C 1.34421 * 124.34606 * 90.02582 * 3 2 1 28 28 O 1.21282 * 124.94409 * 0.42503 * 27 3 2 29 29 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 31 31 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 33 33 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 34 34 H 1.09001 * 110.24370 * 281.97611 * 4 3 2 35 35 H 1.08993 * 110.24973 * 43.98495 * 4 3 2 36 36 H 1.09006 * 111.18839 * 267.58625 * 5 4 3 37 37 H 1.09000 * 110.81933 * 143.77884 * 5 4 3 38 38 H 1.08994 * 110.37188 * 332.46580 * 9 8 6 39 39 H 1.08999 * 110.37108 * 94.80512 * 9 8 6 40 40 H 1.09009 * 110.98928 * 278.98247 * 10 9 8 41 41 H 1.08996 * 110.99414 * 155.16346 * 10 9 8 42 42 H 0.96998 * 120.00586 * 88.60172 * 13 11 10 43 43 H 1.08997 * 109.48011 * 300.00621 * 16 14 13 44 44 H 1.08999 * 109.46732 * 60.01019 * 16 14 13 45 45 H 0.96998 * 120.00265 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.89602 * 242.66464 * 26 8 6 47 47 H 1.08998 * 109.88696 * 3.69436 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2998 2.1600 -1.2117 5 6 2.3526 3.6347 -0.7484 6 6 2.7507 3.4820 0.7379 7 1 2.2497 4.2350 1.3463 8 7 4.2082 3.5808 0.8925 9 6 4.8954 2.5185 0.1276 10 6 6.1457 2.1684 0.9724 11 6 5.5923 2.2904 2.4166 12 1 5.0774 1.3757 2.7106 13 7 6.6686 2.6063 3.3588 14 6 7.3323 1.6122 3.9818 15 8 7.0385 0.4562 3.7620 16 6 8.4399 1.9372 4.9506 17 16 9.1299 0.4015 5.6153 18 6 10.3650 1.0592 6.6861 19 1 10.4967 2.1281 6.7660 20 6 11.1684 0.2036 7.4268 21 7 12.0914 0.6948 8.2264 22 14 10.9409 -1.6453 7.2880 23 1 11.8086 -2.1709 6.2036 24 1 11.3124 -2.2878 8.5743 25 1 9.5208 -1.9473 6.9759 26 6 4.5982 3.4659 2.3098 27 6 2.2716 2.0961 1.1098 28 8 2.1361 1.6891 2.2443 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2574 1.8613 -1.6380 35 1 1.5020 2.0235 -1.9416 36 1 1.3777 4.1129 -0.8440 37 1 3.1124 4.1874 -1.3010 38 1 4.2499 1.6463 0.0256 39 1 5.1920 2.8890 -0.8537 40 1 6.9474 2.8865 0.7996 41 1 6.4831 1.1523 0.7680 42 1 6.9038 3.5308 3.5344 43 1 9.2226 2.4933 4.4346 44 1 8.0431 2.5408 5.7668 45 1 12.6527 0.0969 8.7444 46 1 5.0777 4.3880 2.6385 47 1 3.7182 3.2673 2.9216 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479945168.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:42 Heat of formation + Delta-G solvation = -51.622685 kcal Electronic energy + Delta-G solvation = -27887.074524 eV Core-core repulsion = 24003.367603 eV Total energy + Delta-G solvation = -3883.706921 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.67952 -39.54079 -38.02226 -36.86834 -34.85157 -33.31385 -32.42149 -31.11743 -29.70393 -29.43985 -27.81909 -26.77348 -25.58232 -24.00612 -22.49806 -21.55136 -21.35746 -20.46455 -19.51144 -17.89368 -17.51635 -17.18388 -16.74580 -16.28726 -15.82363 -15.17558 -15.06876 -14.93568 -14.88274 -14.62460 -14.13098 -14.01740 -13.81031 -13.67467 -13.35028 -13.11292 -13.06916 -12.78383 -12.76908 -12.61073 -12.43643 -12.31495 -12.04118 -11.76789 -11.54190 -11.46056 -11.39389 -11.24408 -11.01669 -10.99031 -10.58783 -10.49100 -9.84124 -9.50254 -9.17022 -9.00143 -8.94251 -8.69952 -8.47912 -6.89749 -6.27221 -3.98705 2.13794 2.54329 2.76729 2.97945 3.25178 3.34427 3.48211 3.52513 3.69973 3.89576 3.93341 4.27877 4.34909 4.38495 4.45499 4.58179 4.59910 4.76057 4.77840 4.85722 4.92459 4.95008 5.03133 5.11258 5.11936 5.14438 5.27005 5.30735 5.32949 5.36235 5.42036 5.47231 5.57697 5.65450 5.71563 5.78605 5.84129 5.97379 6.04288 6.10681 6.39502 6.47686 6.58797 6.68253 7.63450 7.76672 7.95939 8.43526 8.51552 9.19039 10.82010 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022177 B = 0.002240 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.285940 B =12494.611165 C =13175.346238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.118 3.882 3 N -0.618 5.618 4 C 0.094 3.906 5 C -0.125 4.125 6 C 0.046 3.954 7 H 0.118 0.882 8 N -0.494 5.494 9 C 0.028 3.972 10 C -0.141 4.141 11 C 0.131 3.869 12 H 0.097 0.903 13 N -0.726 5.726 14 C 0.532 3.468 15 O -0.519 6.519 16 C -0.123 4.123 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.027 3.973 27 C 0.487 3.513 28 O -0.519 6.519 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.401 0.599 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.271 0.729 46 H 0.089 0.911 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.114 7.718 -23.930 34.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.354 5.354 4 C -0.029 4.029 5 C -0.163 4.163 6 C -0.067 4.067 7 H 0.135 0.865 8 N -0.219 5.219 9 C -0.100 4.100 10 C -0.181 4.181 11 C 0.024 3.976 12 H 0.115 0.885 13 N -0.380 5.380 14 C 0.318 3.682 15 O -0.393 6.393 16 C -0.274 4.274 17 S 0.084 5.916 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.101 4.101 27 C 0.272 3.728 28 O -0.392 6.392 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.235 0.765 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.080 0.920 46 H 0.107 0.893 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.420 5.938 -23.725 33.862 hybrid contribution 0.309 0.220 0.683 0.781 sum -23.111 6.158 -23.042 33.211 Atomic orbital electron populations 1.22134 0.95608 1.02483 1.02339 1.21382 0.94469 0.81107 1.03411 1.48496 1.65534 1.14008 1.07347 1.22287 1.01876 0.91068 0.87621 1.22704 1.03603 0.95677 0.94339 1.22831 0.90425 0.94656 0.98758 0.86461 1.63978 1.03160 1.45576 1.09157 1.23350 0.95257 0.93114 0.98256 1.23152 0.97562 1.02972 0.94384 1.22031 0.87920 0.98835 0.88780 0.88518 1.45884 1.36842 1.09727 1.45525 1.20315 0.82322 0.85230 0.80325 1.90697 1.65720 1.19774 1.63089 1.23274 0.98717 1.05034 1.00371 1.84797 1.44512 1.07173 1.55114 1.22318 1.19247 0.97077 1.28174 0.89365 1.24712 0.93700 0.99313 0.93618 1.69936 1.19926 1.35903 1.25946 0.86733 0.81705 0.84973 0.78438 1.19232 1.19948 1.15923 1.23158 0.99517 0.98583 0.88851 1.21898 0.76991 0.89162 0.84746 1.90762 1.51912 1.75637 1.20936 0.91299 0.92245 0.92490 0.90256 0.89867 0.90599 0.90197 0.89241 0.87888 0.92316 0.89364 0.89933 0.90131 0.76465 0.88442 0.88398 0.91958 0.89304 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 10.24 37.16 0.38 -0.66 16 2 C 0.12 0.85 6.65 -4.04 -0.03 0.82 16 3 N -0.62 -4.78 2.27 -172.30 -0.39 -5.17 16 4 C 0.09 0.42 6.35 -3.03 -0.02 0.40 16 5 C -0.13 -0.53 6.43 -25.01 -0.16 -0.69 16 6 C 0.05 0.35 3.02 -67.73 -0.20 0.14 16 7 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 8 N -0.49 -4.18 5.19 -223.31 -1.16 -5.34 16 9 C 0.03 0.23 4.79 -2.30 -0.01 0.22 16 10 C -0.14 -1.53 6.76 -24.59 -0.17 -1.70 16 11 C 0.13 1.66 3.31 -66.10 -0.22 1.44 16 12 H 0.10 1.57 7.55 -51.93 -0.39 1.18 16 13 N -0.73 -9.78 5.18 -52.04 -0.27 -10.05 16 14 C 0.53 9.79 7.85 -10.98 -0.09 9.70 16 15 O -0.52 -11.61 15.51 5.56 0.09 -11.53 16 16 C -0.12 -2.44 6.16 36.00 0.22 -2.21 16 17 S -0.14 -3.68 18.55 -107.50 -1.99 -5.67 16 18 C -0.52 -15.19 10.04 30.94 0.31 -14.88 16 19 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 20 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.83 13.97 55.49 0.78 -26.05 16 22 Si 0.86 22.11 27.74 -169.99 -4.72 17.39 16 23 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 25 H -0.24 -6.09 6.74 56.52 0.38 -5.71 16 26 C 0.03 0.28 6.20 -2.83 -0.02 0.26 16 27 C 0.49 5.09 5.86 -10.86 -0.06 5.03 16 28 O -0.52 -7.74 16.31 5.56 0.09 -7.65 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16 34 H 0.08 0.31 6.71 -51.93 -0.35 -0.04 16 35 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 36 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.10 0.35 8.07 -51.93 -0.42 -0.06 16 38 H 0.06 0.53 4.51 -51.93 -0.23 0.30 16 39 H 0.09 0.57 8.12 -51.93 -0.42 0.15 16 40 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.40 4.17 8.37 -40.82 -0.34 3.83 16 43 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 44 H 0.10 1.81 8.14 -51.92 -0.42 1.38 16 45 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 46 H 0.09 0.78 7.72 -51.93 -0.40 0.38 16 47 H 0.08 0.95 6.26 -51.93 -0.33 0.62 16 LS Contribution 385.93 15.07 5.82 5.82 Total: -1.00 -36.79 385.93 -9.44 -46.22 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.52 Total: 1.42 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -0.16 Total: 0.61 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -1.04 Total: -46.62 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: 0.18 Total: -19.18 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.72 Total: 17.39 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.79 -9.44 -46.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479945168.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.398 kcal (2) G-P(sol) polarization free energy of solvation -36.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds