Wall clock time and date at job start Wed Apr 1 2020 00:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46504 * 109.47343 * 2 1 4 4 C 1.46767 * 124.34431 * 269.99822 * 3 2 1 5 5 C 1.54486 * 105.46960 * 196.99047 * 4 3 2 6 6 C 1.54625 * 101.76485 * 334.58807 * 5 4 3 7 7 H 1.09002 * 110.59602 * 266.06298 * 6 5 4 8 8 N 1.46902 * 110.48645 * 143.47716 * 6 5 4 9 9 C 1.48561 * 111.00104 * 175.16757 * 8 6 5 10 10 C 1.54382 * 104.59143 * 200.95924 * 9 8 6 11 11 C 1.54257 * 105.06391 * 23.84952 * 10 9 8 12 12 H 1.09001 * 110.32508 * 241.00606 * 11 10 9 13 13 N 1.46502 * 110.32120 * 118.89302 * 11 10 9 14 14 C 1.34775 * 119.99621 * 86.45747 * 13 11 10 15 15 O 1.21285 * 120.00264 * 359.97438 * 14 13 11 16 16 C 1.50697 * 120.00215 * 179.72442 * 14 13 11 17 17 S 1.80997 * 109.47501 * 180.27502 * 16 14 13 18 18 C 1.76206 * 100.00242 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99721 * 0.02562 * 18 17 16 20 20 C 1.38792 * 120.00103 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99809 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47003 * 90.00559 * 22 20 18 24 24 H 1.48502 * 109.46934 * 210.00085 * 22 20 18 25 25 H 1.48497 * 109.47166 * 330.00023 * 22 20 18 26 26 C 1.48562 * 111.00220 * 59.74549 * 8 6 5 27 27 C 1.34413 * 124.34983 * 89.97331 * 3 2 1 28 28 O 1.21281 * 124.94482 * 359.57890 * 27 3 2 29 29 H 1.09004 * 109.47542 * 60.00030 * 1 2 3 30 30 H 1.09004 * 109.47419 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47499 * 300.00440 * 1 2 3 32 32 H 1.09001 * 109.47499 * 239.99560 * 2 1 3 33 33 H 1.09004 * 109.47542 * 119.99970 * 2 1 3 34 34 H 1.08998 * 110.24978 * 315.99425 * 4 3 2 35 35 H 1.09003 * 110.24552 * 77.99990 * 4 3 2 36 36 H 1.09002 * 110.96833 * 216.47066 * 5 4 3 37 37 H 1.09001 * 110.96550 * 92.70932 * 5 4 3 38 38 H 1.08999 * 110.41246 * 82.17881 * 9 8 6 39 39 H 1.08995 * 110.51191 * 319.78948 * 9 8 6 40 40 H 1.09001 * 110.31841 * 264.95238 * 10 9 8 41 41 H 1.08993 * 110.32142 * 142.75030 * 10 9 8 42 42 H 0.96996 * 120.00112 * 266.45204 * 13 11 10 43 43 H 1.09006 * 109.46841 * 300.27341 * 16 14 13 44 44 H 1.09000 * 109.47216 * 60.27408 * 16 14 13 45 45 H 0.97009 * 119.99858 * 179.97438 * 21 20 18 46 46 H 1.09000 * 110.40767 * 40.25948 * 26 8 6 47 47 H 1.09002 * 110.41004 * 277.82702 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1619 -1.2118 5 6 3.1740 3.3444 -0.7487 6 6 2.7686 3.4757 0.7377 7 1 1.9740 4.2126 0.8548 8 7 3.9316 3.8408 1.5575 9 6 3.5337 4.0833 2.9681 10 6 4.6732 4.9467 3.5507 11 6 5.3157 5.6387 2.3310 12 1 6.3628 5.3497 2.2398 13 7 5.1989 7.0940 2.4516 14 6 6.1327 7.7912 3.1286 15 8 7.0695 7.2137 3.6383 16 6 6.0159 9.2889 3.2474 17 16 7.4151 9.9296 4.2002 18 6 7.0351 11.6501 4.1828 19 1 6.1486 12.0021 3.6762 20 6 7.8744 12.5526 4.8209 21 7 8.9545 12.1234 5.4388 22 14 7.4711 14.3765 4.8031 23 1 6.6285 14.7087 5.9798 24 1 8.7299 15.1624 4.8580 25 1 6.7344 14.7084 3.5571 26 6 4.5104 5.1352 1.1139 27 6 2.2706 2.0964 1.1097 28 8 2.1203 1.6948 2.2442 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.8327 1.5531 -1.9382 35 1 1.3637 2.5305 -1.6432 36 1 2.9300 4.2518 -1.3011 37 1 4.2328 3.1039 -0.8446 38 1 3.4569 3.1400 3.5089 39 1 2.5878 4.6231 3.0107 40 1 5.4044 4.3167 4.0573 41 1 4.2709 5.6898 4.2392 42 1 4.4495 7.5558 2.0441 43 1 6.0199 9.7337 2.2522 44 1 5.0848 9.5416 3.7547 45 1 9.5413 12.7544 5.8845 46 1 3.7177 5.8404 0.8643 47 1 5.1689 4.9839 0.2585 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479945170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:47 Heat of formation + Delta-G solvation = -56.873127 kcal Electronic energy + Delta-G solvation = -26998.620594 eV Core-core repulsion = 23114.685997 eV Total energy + Delta-G solvation = -3883.934597 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.14229 -39.65168 -38.11298 -36.81255 -34.83797 -33.42773 -32.42827 -31.05730 -29.67269 -28.98151 -28.18023 -26.52047 -25.46125 -24.00178 -22.57314 -21.68178 -20.78646 -20.19949 -19.53102 -17.84702 -17.55277 -17.15922 -16.64145 -16.40719 -15.77899 -15.43480 -14.82114 -14.80374 -14.57143 -14.40373 -14.34735 -14.16204 -13.96356 -13.70149 -13.40707 -13.11051 -12.94601 -12.74842 -12.59436 -12.51482 -12.39103 -12.33596 -11.88325 -11.67265 -11.57174 -11.44434 -11.41934 -11.06474 -11.02512 -10.83972 -10.76072 -10.04776 -9.81573 -9.40726 -9.18663 -9.07118 -8.93645 -8.85143 -8.23315 -6.49770 -6.21567 -3.92150 2.16214 2.50750 2.99924 3.08563 3.22254 3.26988 3.30658 3.54730 3.75687 3.84280 4.01958 4.20361 4.31044 4.44454 4.49795 4.57743 4.69376 4.73491 4.86849 4.88082 4.96341 4.98076 5.05814 5.13600 5.15589 5.20052 5.24002 5.29102 5.37035 5.41158 5.46365 5.62770 5.66983 5.68046 5.87360 5.92257 5.99415 6.08977 6.12573 6.13361 6.34726 6.52560 6.68032 6.73195 7.59414 7.69148 7.81872 8.35102 8.61477 9.23715 10.85819 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.036056 B = 0.001730 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.376130 B =16182.167136 C =16399.256427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.123 3.877 3 N -0.620 5.620 4 C 0.105 3.895 5 C -0.127 4.127 6 C 0.039 3.961 7 H 0.081 0.919 8 N -0.490 5.490 9 C 0.036 3.964 10 C -0.136 4.136 11 C 0.145 3.855 12 H 0.101 0.899 13 N -0.734 5.734 14 C 0.533 3.467 15 O -0.514 6.514 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.030 3.970 27 C 0.531 3.469 28 O -0.518 6.518 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.396 0.604 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.052 0.948 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.059 -21.846 -17.300 33.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.001 3.999 3 N -0.356 5.356 4 C -0.019 4.019 5 C -0.165 4.165 6 C -0.073 4.073 7 H 0.099 0.901 8 N -0.215 5.215 9 C -0.092 4.092 10 C -0.175 4.175 11 C 0.039 3.961 12 H 0.119 0.881 13 N -0.389 5.389 14 C 0.319 3.681 15 O -0.387 6.387 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.098 4.098 27 C 0.318 3.682 28 O -0.393 6.393 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.230 0.770 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.049 -23.517 -15.782 32.553 hybrid contribution -2.467 2.736 -0.859 3.782 sum -18.515 -20.781 -16.641 32.429 Atomic orbital electron populations 1.22167 0.95769 1.02461 1.02431 1.21350 0.94315 0.80906 1.03305 1.48231 1.66352 1.13793 1.07192 1.22087 0.99396 0.92844 0.87561 1.22748 1.01800 0.98667 0.93307 1.22527 0.94152 0.95763 0.94880 0.90114 1.65412 1.24640 1.28874 1.02563 1.23220 0.96614 1.00815 0.88513 1.22805 0.97784 0.99013 0.97918 1.21543 1.01166 0.80022 0.93393 0.88141 1.46136 1.28215 1.06786 1.57749 1.20309 0.81416 0.89172 0.77186 1.90712 1.31661 1.71113 1.45234 1.23536 1.07408 0.93640 1.05847 1.85415 1.26045 1.04524 1.67285 1.22869 1.12981 0.91902 1.40698 0.90952 1.24987 0.94475 0.99549 0.94552 1.70020 1.12400 1.35226 1.32592 0.86171 0.77967 0.82784 0.78589 1.20280 1.20739 1.19725 1.23374 0.98324 0.89900 0.98251 1.20504 0.76377 0.86923 0.84426 1.90708 1.52651 1.74920 1.20973 0.92464 0.91320 0.92225 0.90269 0.89910 0.90014 0.91072 0.89035 0.88517 0.88596 0.93770 0.90111 0.90420 0.77001 0.89242 0.89291 0.92176 0.92943 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.24 37.15 0.38 -0.49 16 2 C 0.12 0.71 6.65 -4.05 -0.03 0.69 16 3 N -0.62 -4.42 2.93 -172.41 -0.51 -4.93 16 4 C 0.10 0.42 7.35 -3.12 -0.02 0.40 16 5 C -0.13 -0.59 5.94 -25.10 -0.15 -0.74 16 6 C 0.04 0.31 2.43 -67.72 -0.16 0.14 16 7 H 0.08 0.59 7.98 -51.93 -0.41 0.17 16 8 N -0.49 -4.72 5.18 -222.03 -1.15 -5.87 16 9 C 0.04 0.39 5.69 -2.18 -0.01 0.38 16 10 C -0.14 -1.65 6.78 -25.35 -0.17 -1.82 16 11 C 0.14 1.72 3.36 -66.55 -0.22 1.49 16 12 H 0.10 1.40 7.64 -51.93 -0.40 1.01 16 13 N -0.73 -9.45 5.04 -52.47 -0.26 -9.72 16 14 C 0.53 9.75 7.84 -10.99 -0.09 9.66 16 15 O -0.51 -11.56 15.56 5.55 0.09 -11.47 16 16 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 17 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 18 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 22 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 C 0.03 0.25 5.46 -2.18 -0.01 0.24 16 27 C 0.53 5.38 7.61 -10.86 -0.08 5.30 16 28 O -0.52 -7.20 15.69 5.56 0.09 -7.11 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.60 7.93 -51.93 -0.41 0.19 16 34 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.10 0.51 8.00 -51.93 -0.42 0.09 16 38 H 0.10 1.21 6.99 -51.93 -0.36 0.85 16 39 H 0.04 0.46 7.89 -51.93 -0.41 0.05 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.08 1.00 7.95 -51.93 -0.41 0.59 16 42 H 0.40 3.90 8.34 -40.82 -0.34 3.56 16 43 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 44 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.05 0.37 7.59 -51.93 -0.39 -0.02 16 47 H 0.09 0.70 7.95 -51.93 -0.41 0.29 16 LS Contribution 395.37 15.07 5.96 5.96 Total: -1.00 -36.61 395.37 -10.19 -46.79 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -7.74 Total: -0.24 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -0.15 Total: -0.52 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: -1.19 Total: -45.94 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.17 Total: -18.58 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.61 -10.19 -46.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479945170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.080 kcal (2) G-P(sol) polarization free energy of solvation -36.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds