Wall clock time and date at job start Wed Apr 1 2020 00:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46504 * 109.47343 * 2 1 4 4 C 1.46767 * 124.34431 * 269.99822 * 3 2 1 5 5 C 1.54486 * 105.46960 * 196.99047 * 4 3 2 6 6 C 1.54625 * 101.76485 * 334.58807 * 5 4 3 7 7 H 1.09002 * 110.59602 * 266.06298 * 6 5 4 8 8 N 1.46902 * 110.48645 * 143.47716 * 6 5 4 9 9 C 1.48561 * 111.00104 * 175.16757 * 8 6 5 10 10 C 1.54382 * 104.59143 * 200.95924 * 9 8 6 11 11 C 1.54257 * 105.06391 * 23.84952 * 10 9 8 12 12 H 1.09001 * 110.32508 * 241.00606 * 11 10 9 13 13 N 1.46502 * 110.32120 * 118.89302 * 11 10 9 14 14 C 1.34775 * 119.99621 * 86.45747 * 13 11 10 15 15 O 1.21285 * 120.00264 * 359.97438 * 14 13 11 16 16 C 1.50697 * 120.00215 * 179.72442 * 14 13 11 17 17 S 1.80997 * 109.47501 * 180.27502 * 16 14 13 18 18 C 1.76206 * 100.00242 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99721 * 0.02562 * 18 17 16 20 20 C 1.38792 * 120.00103 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99809 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47003 * 90.00559 * 22 20 18 24 24 H 1.48502 * 109.46934 * 210.00085 * 22 20 18 25 25 H 1.48497 * 109.47166 * 330.00023 * 22 20 18 26 26 C 1.48562 * 111.00220 * 59.74549 * 8 6 5 27 27 C 1.34413 * 124.34983 * 89.97331 * 3 2 1 28 28 O 1.21281 * 124.94482 * 359.57890 * 27 3 2 29 29 H 1.09004 * 109.47542 * 60.00030 * 1 2 3 30 30 H 1.09004 * 109.47419 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47499 * 300.00440 * 1 2 3 32 32 H 1.09001 * 109.47499 * 239.99560 * 2 1 3 33 33 H 1.09004 * 109.47542 * 119.99970 * 2 1 3 34 34 H 1.08998 * 110.24978 * 315.99425 * 4 3 2 35 35 H 1.09003 * 110.24552 * 77.99990 * 4 3 2 36 36 H 1.09002 * 110.96833 * 216.47066 * 5 4 3 37 37 H 1.09001 * 110.96550 * 92.70932 * 5 4 3 38 38 H 1.08999 * 110.41246 * 82.17881 * 9 8 6 39 39 H 1.08995 * 110.51191 * 319.78948 * 9 8 6 40 40 H 1.09001 * 110.31841 * 264.95238 * 10 9 8 41 41 H 1.08993 * 110.32142 * 142.75030 * 10 9 8 42 42 H 0.96996 * 120.00112 * 266.45204 * 13 11 10 43 43 H 1.09006 * 109.46841 * 300.27341 * 16 14 13 44 44 H 1.09000 * 109.47216 * 60.27408 * 16 14 13 45 45 H 0.97009 * 119.99858 * 179.97438 * 21 20 18 46 46 H 1.09000 * 110.40767 * 40.25948 * 26 8 6 47 47 H 1.09002 * 110.41004 * 277.82702 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1619 -1.2118 5 6 3.1740 3.3444 -0.7487 6 6 2.7686 3.4757 0.7377 7 1 1.9740 4.2126 0.8548 8 7 3.9316 3.8408 1.5575 9 6 3.5337 4.0833 2.9681 10 6 4.6732 4.9467 3.5507 11 6 5.3157 5.6387 2.3310 12 1 6.3628 5.3497 2.2398 13 7 5.1989 7.0940 2.4516 14 6 6.1327 7.7912 3.1286 15 8 7.0695 7.2137 3.6383 16 6 6.0159 9.2889 3.2474 17 16 7.4151 9.9296 4.2002 18 6 7.0351 11.6501 4.1828 19 1 6.1486 12.0021 3.6762 20 6 7.8744 12.5526 4.8209 21 7 8.9545 12.1234 5.4388 22 14 7.4711 14.3765 4.8031 23 1 6.6285 14.7087 5.9798 24 1 8.7299 15.1624 4.8580 25 1 6.7344 14.7084 3.5571 26 6 4.5104 5.1352 1.1139 27 6 2.2706 2.0964 1.1097 28 8 2.1203 1.6948 2.2442 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.8327 1.5531 -1.9382 35 1 1.3637 2.5305 -1.6432 36 1 2.9300 4.2518 -1.3011 37 1 4.2328 3.1039 -0.8446 38 1 3.4569 3.1400 3.5089 39 1 2.5878 4.6231 3.0107 40 1 5.4044 4.3167 4.0573 41 1 4.2709 5.6898 4.2392 42 1 4.4495 7.5558 2.0441 43 1 6.0199 9.7337 2.2522 44 1 5.0848 9.5416 3.7547 45 1 9.5413 12.7544 5.8845 46 1 3.7177 5.8404 0.8643 47 1 5.1689 4.9839 0.2585 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479945170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:46 Heat of formation + Delta-G solvation = -84.792049 kcal Electronic energy + Delta-G solvation = -26999.831249 eV Core-core repulsion = 23114.685997 eV Total energy + Delta-G solvation = -3885.145252 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.80496 -40.83824 -39.18489 -37.50947 -35.76549 -34.57701 -34.26621 -31.99133 -30.81959 -29.57163 -29.17294 -27.68269 -27.19265 -24.46140 -23.24561 -22.67885 -21.61629 -21.35144 -20.22068 -19.81319 -18.15901 -17.90779 -17.86699 -17.43522 -16.87135 -16.70146 -16.43355 -16.12507 -15.77796 -15.30035 -15.06875 -14.97689 -14.72046 -14.64534 -14.45205 -14.26277 -14.01645 -13.76909 -13.55778 -13.35014 -13.21368 -13.15528 -12.90199 -12.82899 -12.74455 -12.64380 -12.47907 -12.18487 -12.18201 -11.94687 -11.75509 -11.71223 -11.13548 -10.94673 -10.77286 -10.25795 -10.13605 -9.73108 -9.59432 -8.65541 -8.33701 -6.11734 1.27052 1.43131 1.44209 1.49613 1.58413 1.62038 1.99444 2.23965 2.29205 2.98630 3.00554 3.20850 3.33813 3.44685 3.59879 3.83236 3.98488 4.00883 4.02485 4.12624 4.15894 4.24167 4.26558 4.32324 4.34680 4.44844 4.48678 4.52540 4.64266 4.71353 4.78014 4.82781 4.93244 4.94945 5.00883 5.01619 5.06954 5.15769 5.25487 5.37120 5.42794 5.62754 5.73931 5.84592 6.11737 6.20695 6.51157 7.07652 7.15135 7.26444 8.75466 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.036056 B = 0.001730 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.376130 B =16182.167136 C =16399.256427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 N -0.618 5.618 4 C 0.101 3.899 5 C -0.118 4.118 6 C 0.038 3.962 7 H 0.092 0.908 8 N -0.502 5.502 9 C 0.048 3.952 10 C -0.134 4.134 11 C 0.143 3.857 12 H 0.078 0.922 13 N -0.705 5.705 14 C 0.536 3.464 15 O -0.564 6.564 16 C -0.129 4.129 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.257 1.257 26 C 0.043 3.957 27 C 0.514 3.486 28 O -0.572 6.572 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.032 0.968 32 H 0.109 0.891 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.416 0.584 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.271 0.729 46 H 0.080 0.920 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.450 -20.875 -20.906 35.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.005 4.005 3 N -0.351 5.351 4 C -0.021 4.021 5 C -0.156 4.156 6 C -0.074 4.074 7 H 0.110 0.890 8 N -0.227 5.227 9 C -0.080 4.080 10 C -0.173 4.173 11 C 0.037 3.963 12 H 0.096 0.904 13 N -0.359 5.359 14 C 0.322 3.678 15 O -0.441 6.441 16 C -0.280 4.280 17 S 0.074 5.926 18 C -0.694 4.694 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.181 1.181 26 C -0.085 4.085 27 C 0.302 3.698 28 O -0.451 6.451 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.051 0.949 32 H 0.127 0.873 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.139 0.861 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.254 0.746 43 H 0.131 0.869 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -18.499 -22.566 -19.476 35.082 hybrid contribution -1.800 2.265 0.199 2.900 sum -20.299 -20.301 -19.277 34.581 Atomic orbital electron populations 1.22101 0.95136 1.03161 1.01692 1.21486 0.94832 0.80559 1.03575 1.48440 1.64932 1.14145 1.07621 1.22376 1.00636 0.92601 0.86467 1.22817 1.01717 1.00240 0.90811 1.22634 0.93735 0.94510 0.96501 0.89027 1.65368 1.25885 1.29561 1.01913 1.22984 0.96202 0.99285 0.89543 1.22719 0.97883 0.98784 0.97965 1.21600 1.00687 0.78888 0.95100 0.90412 1.45808 1.27218 1.07191 1.55699 1.20074 0.81713 0.88649 0.77378 1.90706 1.34023 1.71706 1.47700 1.23371 1.04349 0.94591 1.05689 1.85623 1.31298 1.05911 1.69800 1.23214 1.13393 0.91996 1.40791 0.89806 1.26128 0.94100 1.05119 0.93829 1.70190 1.13761 1.37151 1.33712 0.84952 0.77943 0.75777 0.79297 1.19435 1.20352 1.18054 1.23334 0.98750 0.89729 0.96646 1.21066 0.76216 0.88185 0.84356 1.90675 1.55075 1.76182 1.23118 0.91069 0.90005 0.94898 0.87327 0.92283 0.87938 0.88953 0.86081 0.88866 0.90985 0.93004 0.91942 0.91301 0.74572 0.86878 0.87290 0.92033 0.90210 0.87008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 10.24 71.98 0.74 -0.73 16 2 C 0.12 1.22 6.65 86.37 0.57 1.80 16 3 N -0.62 -7.75 2.93 -817.97 -2.40 -10.15 16 4 C 0.10 0.43 7.35 86.83 0.64 1.07 16 5 C -0.12 -0.62 5.94 31.65 0.19 -0.44 16 6 C 0.04 0.51 2.43 44.91 0.11 0.62 16 7 H 0.09 1.05 7.98 -2.39 -0.02 1.03 16 8 N -0.50 -8.93 5.18 -856.38 -4.44 -13.36 16 9 C 0.05 1.05 5.69 86.45 0.49 1.54 16 10 C -0.13 -3.32 6.78 31.49 0.21 -3.11 16 11 C 0.14 3.24 3.36 45.88 0.15 3.40 16 12 H 0.08 2.19 7.64 -2.39 -0.02 2.17 16 13 N -0.70 -16.76 5.04 -438.30 -2.21 -18.97 16 14 C 0.54 19.29 7.84 87.66 0.69 19.98 16 15 O -0.56 -26.08 15.56 -3.04 -0.05 -26.13 16 16 C -0.13 -4.97 6.16 71.23 0.44 -4.53 16 17 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 18 C -0.55 -31.02 9.50 67.95 0.65 -30.37 16 19 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 20 C 0.01 0.73 5.49 84.86 0.47 1.20 16 21 N -0.91 -56.12 13.22 21.65 0.29 -55.83 16 22 Si 1.00 43.39 29.55 68.60 2.03 45.42 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 26 C 0.04 0.61 5.46 86.45 0.47 1.08 16 27 C 0.51 10.18 7.61 87.90 0.67 10.85 16 28 O -0.57 -16.73 15.69 -3.03 -0.05 -16.77 16 29 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.90 7.93 -2.38 -0.02 0.88 16 34 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.09 0.62 8.00 -2.39 -0.02 0.60 16 38 H 0.07 1.96 6.99 -2.39 -0.02 1.94 16 39 H 0.05 1.05 7.89 -2.39 -0.02 1.03 16 40 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 1.81 7.95 -2.39 -0.02 1.79 16 42 H 0.42 6.67 8.34 -92.71 -0.77 5.89 16 43 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 44 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 45 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 46 H 0.08 0.73 7.59 -2.39 -0.02 0.71 16 47 H 0.11 1.24 7.95 -2.39 -0.02 1.23 16 Total: -1.00 -85.57 395.37 -1.31 -86.88 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.19 Total: 16.22 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 6.48 Total: 2.35 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -8.76 Total: -98.32 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -0.09 Total: -42.90 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -85.57 -1.31 -86.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479945170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.086 kcal (2) G-P(sol) polarization free energy of solvation -85.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds