Wall clock time and date at job start Wed Apr 1 2020 00:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46491 * 109.47443 * 2 1 4 4 C 1.46762 * 124.35144 * 270.00508 * 3 2 1 5 5 C 1.54483 * 105.47351 * 196.99519 * 4 3 2 6 6 C 1.54632 * 101.76281 * 334.57693 * 5 4 3 7 7 H 1.08996 * 110.59543 * 143.53187 * 6 5 4 8 8 N 1.46897 * 110.48849 * 266.12278 * 6 5 4 9 9 C 1.48532 * 111.00004 * 293.62164 * 8 6 5 10 10 C 1.55195 * 103.23847 * 200.25762 * 9 8 6 11 11 C 1.54592 * 102.80101 * 37.43736 * 10 9 8 12 12 H 1.09002 * 110.30862 * 96.98158 * 11 10 9 13 13 N 1.46504 * 110.31017 * 219.04952 * 11 10 9 14 14 C 1.34776 * 119.99860 * 272.21445 * 13 11 10 15 15 O 1.21279 * 120.00061 * 359.97438 * 14 13 11 16 16 C 1.50704 * 119.99847 * 179.97438 * 14 13 11 17 17 S 1.81000 * 109.47013 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99847 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00271 * 359.97438 * 18 17 16 20 20 C 1.38806 * 119.99660 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00295 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99617 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47306 * 90.00057 * 22 20 18 24 24 H 1.48496 * 109.47023 * 210.00263 * 22 20 18 25 25 H 1.48497 * 109.47379 * 330.00336 * 22 20 18 26 26 C 1.47903 * 110.99723 * 176.23168 * 8 6 5 27 27 C 1.34425 * 124.34760 * 89.97390 * 3 2 1 28 28 O 1.21278 * 124.94172 * 359.65891 * 27 3 2 29 29 H 1.09005 * 109.46937 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46827 * 299.99607 * 1 2 3 31 31 H 1.08993 * 109.47042 * 59.99507 * 1 2 3 32 32 H 1.09003 * 109.46830 * 239.99838 * 2 1 3 33 33 H 1.09001 * 109.46920 * 120.00817 * 2 1 3 34 34 H 1.09004 * 110.24702 * 315.99081 * 4 3 2 35 35 H 1.09003 * 110.24865 * 77.90426 * 4 3 2 36 36 H 1.09004 * 110.96439 * 216.46618 * 5 4 3 37 37 H 1.08993 * 110.97336 * 92.70001 * 5 4 3 38 38 H 1.08996 * 110.67351 * 318.72000 * 9 8 6 39 39 H 1.09003 * 110.66251 * 81.68168 * 9 8 6 40 40 H 1.09001 * 110.76380 * 279.12697 * 10 9 8 41 41 H 1.08997 * 110.79759 * 155.76565 * 10 9 8 42 42 H 0.96996 * 119.99705 * 92.20827 * 13 11 10 43 43 H 1.08990 * 109.47065 * 299.99710 * 16 14 13 44 44 H 1.08997 * 109.47076 * 59.99722 * 16 14 13 45 45 H 0.96995 * 120.00501 * 179.97438 * 21 20 18 46 46 H 1.08995 * 109.91938 * 26.48850 * 26 8 6 47 47 H 1.09002 * 109.91571 * 265.19245 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2944 2.1619 -1.2117 5 6 3.1742 3.3443 -0.7486 6 6 2.7688 3.4756 0.7379 7 1 3.6303 3.7473 1.3477 8 7 1.6971 4.4682 0.8928 9 6 2.1817 5.8315 0.5570 10 6 1.1524 6.7574 1.2584 11 6 0.8549 6.0034 2.5748 12 1 1.4610 6.4058 3.3865 13 7 -0.5685 6.1024 2.9070 14 6 -1.0211 7.1472 3.6281 15 8 -0.2500 8.0052 4.0024 16 6 -2.4855 7.2493 3.9693 17 16 -2.7761 8.7506 4.9377 18 6 -4.5149 8.6198 5.1905 19 1 -5.0582 7.7800 4.7831 20 6 -5.1865 9.5962 5.9132 21 7 -4.5244 10.6194 6.4101 22 14 -7.0301 9.4579 6.1805 23 1 -7.2936 8.7024 7.4317 24 1 -7.6177 10.8172 6.2900 25 1 -7.6446 8.7439 5.0326 26 6 1.2384 4.5381 2.2972 27 6 2.2708 2.0963 1.1099 28 8 2.1218 1.6941 2.2442 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5140 0.8899 34 1 2.8328 1.5532 -1.9382 35 1 1.3636 2.5292 -1.6439 36 1 2.9302 4.2518 -1.3010 37 1 4.2329 3.1038 -0.8444 38 1 3.1819 5.9941 0.9583 39 1 2.1711 5.9886 -0.5216 40 1 0.2484 6.8556 0.6574 41 1 1.5884 7.7350 1.4638 42 1 -1.1851 5.4160 2.6079 43 1 -3.0706 7.2902 3.0506 44 1 -2.7844 6.3780 4.5519 45 1 -4.9937 11.3020 6.9148 46 1 2.0424 4.2315 2.9662 47 1 0.3699 3.8942 2.4366 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479945171.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:49 Heat of formation + Delta-G solvation = -57.109588 kcal Electronic energy + Delta-G solvation = -27354.935251 eV Core-core repulsion = 23470.990400 eV Total energy + Delta-G solvation = -3883.944851 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.17854 -39.59364 -38.10737 -36.79358 -34.81630 -33.32831 -32.40778 -30.97077 -29.59729 -29.36096 -27.79205 -26.65446 -25.44148 -23.95725 -22.67645 -21.35861 -21.04267 -20.31070 -19.52353 -17.84014 -17.39227 -17.12871 -16.61102 -16.21810 -15.89133 -15.27733 -15.03485 -14.80805 -14.78235 -14.48861 -14.04994 -14.00408 -13.81729 -13.55598 -13.32415 -13.23625 -13.04414 -12.75846 -12.53381 -12.47411 -12.32596 -12.14198 -11.87607 -11.76543 -11.60062 -11.52447 -11.43537 -11.04657 -11.00373 -10.94150 -10.73854 -10.03346 -9.79276 -9.36405 -9.13997 -9.05023 -8.94971 -8.79873 -8.21135 -6.47431 -6.19577 -3.89767 2.12901 2.58369 3.05308 3.11446 3.24121 3.29527 3.33774 3.58398 3.74974 3.80120 4.01409 4.22607 4.29749 4.40298 4.57348 4.65508 4.69220 4.79763 4.94905 4.96629 5.00720 5.05133 5.10445 5.14245 5.15586 5.21062 5.28323 5.30048 5.40883 5.45229 5.46538 5.58273 5.67651 5.70271 5.80740 5.90605 5.92954 6.01532 6.15536 6.18152 6.42030 6.49268 6.70697 6.72055 7.61880 7.75547 7.81721 8.37529 8.64887 9.25785 10.87872 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.002068 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.530363 B =13533.458761 C =14464.018786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 N -0.614 5.614 4 C 0.109 3.891 5 C -0.127 4.127 6 C 0.039 3.961 7 H 0.080 0.920 8 N -0.497 5.497 9 C 0.037 3.963 10 C -0.133 4.133 11 C 0.139 3.861 12 H 0.095 0.905 13 N -0.729 5.729 14 C 0.533 3.467 15 O -0.518 6.518 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.032 3.968 27 C 0.529 3.471 28 O -0.525 6.525 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.051 0.949 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.399 0.601 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.064 0.936 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.536 -20.122 -20.078 32.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.001 3.999 3 N -0.349 5.349 4 C -0.014 4.014 5 C -0.165 4.165 6 C -0.073 4.073 7 H 0.097 0.903 8 N -0.223 5.223 9 C -0.091 4.091 10 C -0.172 4.172 11 C 0.033 3.967 12 H 0.113 0.887 13 N -0.384 5.384 14 C 0.320 3.680 15 O -0.392 6.392 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.096 4.096 27 C 0.315 3.685 28 O -0.400 6.400 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.234 0.766 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 17.297 -19.001 -19.078 32.003 hybrid contribution -1.754 -1.264 0.042 2.163 sum 15.543 -20.265 -19.036 31.853 Atomic orbital electron populations 1.22149 0.95478 1.02345 1.02788 1.21356 0.94681 0.80875 1.03004 1.48249 1.65552 1.13769 1.07301 1.22035 0.99843 0.92358 0.87137 1.22691 0.99921 0.99559 0.94279 1.22569 0.94684 0.91885 0.98141 0.90261 1.64818 1.31211 1.04579 1.21717 1.23338 0.97322 0.87146 1.01268 1.22996 0.99649 0.98593 0.96001 1.21695 0.83419 0.94046 0.97554 0.88650 1.46091 1.08431 1.26797 1.57038 1.20321 0.90338 0.80727 0.76645 1.90691 1.57654 1.39030 1.51859 1.23531 0.94218 1.07456 1.05188 1.85373 1.09698 1.22245 1.66064 1.22870 0.92962 1.12153 1.40314 0.90941 1.24993 0.99314 0.94498 0.94816 1.70013 1.36224 1.10519 1.33566 0.86167 0.83013 0.77610 0.78705 1.20278 1.20767 1.19704 1.23143 1.01665 0.96329 0.88475 1.20580 0.76604 0.86884 0.84418 1.90743 1.52996 1.75154 1.21097 0.91444 0.92047 0.92294 0.90393 0.90085 0.90542 0.90567 0.88330 0.89624 0.93039 0.89382 0.89955 0.89947 0.76603 0.89220 0.89233 0.92206 0.91803 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.24 37.16 0.38 -0.72 16 2 C 0.12 0.78 6.65 -4.04 -0.03 0.75 16 3 N -0.61 -4.67 2.93 -172.41 -0.51 -5.17 16 4 C 0.11 0.52 7.35 -3.12 -0.02 0.49 16 5 C -0.13 -0.57 6.69 -25.09 -0.17 -0.74 16 6 C 0.04 0.31 2.31 -67.72 -0.16 0.15 16 7 H 0.08 0.63 8.05 -51.93 -0.42 0.21 16 8 N -0.50 -4.39 5.12 -222.34 -1.14 -5.53 16 9 C 0.04 0.28 5.87 -1.76 -0.01 0.27 16 10 C -0.13 -1.40 6.80 -24.73 -0.17 -1.57 16 11 C 0.14 1.71 3.31 -66.57 -0.22 1.49 16 12 H 0.10 1.35 7.60 -51.93 -0.39 0.95 16 13 N -0.73 -10.18 5.07 -52.49 -0.27 -10.44 16 14 C 0.53 10.09 7.85 -10.98 -0.09 10.00 16 15 O -0.52 -11.77 15.54 5.56 0.09 -11.68 16 16 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 19 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 22 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 C 0.03 0.35 5.35 -2.75 -0.01 0.33 16 27 C 0.53 5.48 7.07 -10.86 -0.08 5.40 16 28 O -0.53 -7.50 16.87 5.56 0.09 -7.40 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.61 7.93 -51.93 -0.41 0.20 16 34 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.36 6.65 -51.93 -0.35 0.02 16 37 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.05 0.37 7.97 -51.93 -0.41 -0.05 16 39 H 0.09 0.54 7.26 -51.93 -0.38 0.16 16 40 H 0.08 0.92 8.06 -51.93 -0.42 0.50 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.40 4.65 8.32 -40.82 -0.34 4.31 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.06 0.74 7.57 -51.93 -0.39 0.35 16 47 H 0.09 1.03 7.63 -51.93 -0.40 0.64 16 LS Contribution 395.39 15.07 5.96 5.96 Total: -1.00 -36.57 395.39 -10.10 -46.68 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.68 Total: 0.67 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -0.15 Total: -0.16 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -1.18 Total: -46.80 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.18 Total: -19.08 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.57 -10.10 -46.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479945171.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.433 kcal (2) G-P(sol) polarization free energy of solvation -36.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds