Wall clock time and date at job start Wed Apr 1 2020 01:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.46873 * 2 1 4 4 C 1.46899 * 110.99841 * 164.29156 * 3 2 1 5 5 C 1.53001 * 109.47023 * 293.95185 * 4 3 2 6 6 N 1.46500 * 109.47240 * 180.02562 * 5 4 3 7 7 C 1.34779 * 119.99938 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99863 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99854 * 180.02562 * 7 6 5 10 10 S 1.80995 * 109.47153 * 179.97438 * 9 7 6 11 11 C 1.76200 * 100.00173 * 180.02562 * 10 9 7 12 12 H 1.07997 * 119.99738 * 0.02562 * 11 10 9 13 13 C 1.38796 * 120.00109 * 180.02562 * 11 10 9 14 14 N 1.31630 * 119.99952 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99965 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47086 * 59.99837 * 15 13 11 17 17 H 1.48503 * 109.47001 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47085 * 299.99808 * 15 13 11 19 19 C 1.46899 * 110.99837 * 288.24305 * 3 2 1 20 20 C 1.50705 * 109.46873 * 164.22083 * 19 3 2 21 21 C 1.41381 * 128.00517 * 97.67156 * 20 19 3 22 22 C 1.50704 * 126.80229 * 359.93631 * 21 20 19 23 23 N 1.30175 * 106.39471 * 179.97438 * 21 20 19 24 24 O 1.20920 * 111.60303 * 0.02562 * 23 21 20 25 25 C 1.34035 * 111.56836 * 359.75838 * 24 23 21 26 26 C 1.50701 * 126.77925 * 180.29019 * 25 24 23 27 27 H 1.08999 * 109.46964 * 186.14806 * 1 2 3 28 28 H 1.09004 * 109.47466 * 306.15303 * 1 2 3 29 29 H 1.09002 * 109.47226 * 66.14814 * 1 2 3 30 30 H 1.08993 * 109.46994 * 239.99813 * 2 1 3 31 31 H 1.09003 * 109.47083 * 119.99456 * 2 1 3 32 32 H 1.08997 * 109.47242 * 53.94785 * 4 3 2 33 33 H 1.08998 * 109.47166 * 173.95314 * 4 3 2 34 34 H 1.09008 * 109.47127 * 300.00157 * 5 4 3 35 35 H 1.08998 * 109.47045 * 60.00054 * 5 4 3 36 36 H 0.96996 * 119.99931 * 0.02562 * 6 5 4 37 37 H 1.08996 * 109.46971 * 300.00405 * 9 7 6 38 38 H 1.09008 * 109.47078 * 60.00182 * 9 7 6 39 39 H 0.97008 * 119.99726 * 179.97438 * 14 13 11 40 40 H 1.09004 * 109.47103 * 284.21789 * 19 3 2 41 41 H 1.08999 * 109.47108 * 44.22362 * 19 3 2 42 42 H 1.08997 * 109.47230 * 90.00405 * 22 21 20 43 43 H 1.09008 * 109.46942 * 210.00356 * 22 21 20 44 44 H 1.08997 * 109.47411 * 329.99954 * 22 21 20 45 45 H 1.09001 * 109.47097 * 274.58003 * 26 25 24 46 46 H 1.08999 * 109.46955 * 34.57471 * 26 25 24 47 47 H 1.08998 * 109.47622 * 154.57607 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4398 1.4413 0.3713 5 6 3.6046 0.9970 1.8261 6 7 5.0208 1.0537 2.1966 7 6 5.4065 0.7048 3.4400 8 8 4.5813 0.3435 4.2519 9 6 6.8633 0.7637 3.8213 10 16 7.0581 0.2394 5.5427 11 6 8.8040 0.4011 5.7162 12 1 9.4003 0.7413 4.8825 13 6 9.4131 0.0913 6.9243 14 7 8.6862 -0.3229 7.9406 15 14 11.2642 0.2621 7.1080 16 1 11.6583 1.6720 6.8586 17 1 11.6629 -0.1269 8.4845 18 1 11.9426 -0.6225 6.1269 19 6 1.7903 2.0244 -1.3025 20 6 1.9360 3.5178 -1.1616 21 6 3.0669 4.3137 -1.4553 22 6 4.3958 3.8351 -1.9808 23 7 2.7332 5.5417 -1.1812 24 8 1.5970 5.6139 -0.7738 25 6 1.0122 4.4088 -0.7288 26 6 -0.3949 4.1048 -0.2829 27 1 -0.3633 -1.0218 0.1101 28 1 -0.3634 0.6063 0.8298 29 1 -0.3634 0.4156 -0.9399 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 4.0117 0.7784 -0.2780 33 1 3.8043 2.4625 0.2598 34 1 3.0326 1.6599 2.4755 35 1 3.2401 -0.0241 1.9376 36 1 5.6808 1.3431 1.5473 37 1 7.4358 0.1011 3.1723 38 1 7.2271 1.7852 3.7096 39 1 9.1120 -0.5397 8.7848 40 1 2.5204 1.6545 -2.0224 41 1 0.7847 1.7888 -1.6509 42 1 4.3796 3.8426 -3.0707 43 1 5.1866 4.4955 -1.6246 44 1 4.5826 2.8211 -1.6272 45 1 -0.4151 3.9862 0.8005 46 1 -1.0525 4.9249 -0.5710 47 1 -0.7348 3.1833 -0.7556 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480963718.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:09:53 Heat of formation + Delta-G solvation = 19.653248 kcal Electronic energy + Delta-G solvation = -27089.963303 eV Core-core repulsion = 23209.347139 eV Total energy + Delta-G solvation = -3880.616164 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.17704 -39.40474 -38.48722 -35.30938 -34.55619 -33.75809 -32.42395 -31.44041 -30.30086 -29.12596 -28.65972 -27.54526 -25.79064 -25.41288 -23.20674 -22.16642 -21.01062 -20.50279 -20.08425 -17.95015 -17.83967 -17.33839 -16.47285 -16.30147 -15.89597 -15.60424 -15.07197 -14.98411 -14.79737 -14.56920 -14.14641 -13.92757 -13.81591 -13.73779 -13.48036 -13.35557 -13.10311 -13.01506 -12.69211 -12.61887 -12.56261 -12.32041 -12.22312 -11.94116 -11.68599 -11.48239 -11.15406 -11.06084 -11.04098 -11.02593 -10.76653 -10.16077 -9.82263 -9.47591 -9.39415 -9.05911 -8.87371 -8.78569 -8.23581 -6.49521 -6.21018 -3.91678 1.20121 1.86526 2.83617 2.96012 3.10649 3.23822 3.25865 3.29333 3.51088 3.84774 3.92907 4.13124 4.21000 4.42222 4.51671 4.58831 4.72732 4.77170 4.89208 4.96135 5.04387 5.06814 5.10342 5.12194 5.13957 5.14448 5.19895 5.25183 5.32074 5.36233 5.46096 5.49126 5.59723 5.63249 5.66008 5.76446 5.83515 5.88028 5.89715 5.94481 6.13911 6.52269 6.59970 6.69156 7.59645 7.69238 8.03445 8.35478 8.61445 9.24078 10.86353 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015710 B = 0.002091 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.879432 B =13389.495275 C =14299.633814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.042 3.958 3 N -0.529 5.529 4 C 0.043 3.957 5 C 0.125 3.875 6 N -0.740 5.740 7 C 0.533 3.467 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.134 3.866 20 C -0.199 4.199 21 C 0.023 3.977 22 C -0.080 4.080 23 N -0.366 5.366 24 O 0.095 5.905 25 C -0.008 4.008 26 C -0.071 4.071 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.396 0.604 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.269 0.731 40 H 0.049 0.951 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.092 0.908 46 H 0.079 0.921 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.668 5.240 -24.761 30.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 N -0.254 5.254 4 C -0.086 4.086 5 C 0.001 3.999 6 N -0.395 5.395 7 C 0.319 3.681 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 C 0.006 3.994 20 C -0.204 4.204 21 C -0.136 4.136 22 C -0.137 4.137 23 N -0.072 5.072 24 O 0.031 5.969 25 C -0.072 4.072 26 C -0.128 4.128 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.230 0.770 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.111 0.889 46 H 0.098 0.902 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.703 5.996 -22.919 30.184 hybrid contribution 2.815 -0.470 -1.781 3.365 sum -15.888 5.526 -24.701 29.885 Atomic orbital electron populations 1.21803 0.94579 1.02020 1.02167 1.22246 0.96457 0.88121 1.01678 1.61883 1.17218 1.17507 1.28772 1.22331 0.88566 1.01892 0.95774 1.21197 0.82553 1.01861 0.94298 1.45915 1.08447 1.70922 1.14178 1.20287 0.90781 0.76109 0.80963 1.90706 1.53930 1.44968 1.49377 1.23528 0.94316 1.05269 1.07262 1.85398 1.09484 1.86537 1.01876 1.22825 0.92214 1.52379 1.01017 0.90992 1.24992 0.99260 0.94538 0.94794 1.70011 1.35871 1.41849 1.02558 0.86226 0.83106 0.78729 0.77442 1.19939 1.20799 1.19946 1.20252 1.02151 0.86932 0.90016 1.20713 0.93336 0.97313 1.09003 1.23436 0.98668 0.89183 1.02319 1.20239 0.90447 1.01812 1.01244 1.73865 0.95920 1.21114 1.16332 1.84811 1.19464 1.30524 1.62145 1.24260 0.98274 0.84196 1.00497 1.20328 0.86520 1.02910 1.03039 0.92059 0.91408 0.93044 0.94510 0.89719 0.94026 0.89989 0.90856 0.91542 0.77038 0.89252 0.89236 0.92124 0.93241 0.89095 0.90196 0.90220 0.90230 0.88947 0.90172 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.86 37.16 0.37 -0.45 16 2 C 0.04 0.29 5.56 -3.82 -0.02 0.27 16 3 N -0.53 -4.03 4.41 -236.07 -1.04 -5.07 16 4 C 0.04 0.36 4.39 -3.82 -0.02 0.35 16 5 C 0.13 1.48 5.64 -4.04 -0.02 1.46 16 6 N -0.74 -9.89 5.56 -60.29 -0.33 -10.23 16 7 C 0.53 10.03 7.85 -10.98 -0.09 9.94 16 8 O -0.52 -11.86 15.86 5.56 0.09 -11.77 16 9 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 10 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 11 C -0.54 -15.35 9.50 30.94 0.29 -15.05 16 12 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 13 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 14 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 15 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 C 0.13 0.87 5.08 -4.97 -0.03 0.85 16 20 C -0.20 -1.68 5.13 -104.42 -0.54 -2.21 16 21 C 0.02 0.23 6.66 -82.10 -0.55 -0.32 16 22 C -0.08 -0.56 10.03 36.01 0.36 -0.20 16 23 N -0.37 -4.35 12.07 33.42 0.40 -3.95 16 24 O 0.09 1.03 11.20 17.19 0.19 1.22 16 25 C -0.01 -0.07 7.49 -35.30 -0.26 -0.33 16 26 C -0.07 -0.35 10.33 36.01 0.37 0.03 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.23 6.75 -51.93 -0.35 -0.12 16 30 H 0.04 0.23 8.06 -51.93 -0.42 -0.19 16 31 H 0.08 0.68 5.94 -51.93 -0.31 0.37 16 32 H 0.04 0.31 8.12 -51.93 -0.42 -0.11 16 33 H 0.08 0.75 5.53 -51.93 -0.29 0.46 16 34 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 35 H 0.07 0.83 6.28 -51.93 -0.33 0.50 16 36 H 0.40 4.08 8.47 -40.82 -0.35 3.73 16 37 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 38 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 39 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.05 0.30 7.97 -51.93 -0.41 -0.12 16 41 H 0.09 0.47 5.85 -51.93 -0.30 0.16 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 44 H 0.08 0.46 6.72 -51.93 -0.35 0.11 16 45 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.09 0.31 7.50 -51.93 -0.39 -0.08 16 LS Contribution 399.52 15.07 6.02 6.02 Total: -1.00 -36.03 399.52 -8.44 -44.47 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -7.26 Total: -1.22 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 0.00 Total: -6.55 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: -0.24 Total: -44.80 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.28 Total: -10.55 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.03 -8.44 -44.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480963718.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.120 kcal (2) G-P(sol) polarization free energy of solvation -36.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds