Wall clock time and date at job start Wed Apr 1 2020 01:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.46873 * 2 1 4 4 C 1.46899 * 110.99841 * 164.29156 * 3 2 1 5 5 C 1.53001 * 109.47023 * 293.95185 * 4 3 2 6 6 N 1.46500 * 109.47240 * 180.02562 * 5 4 3 7 7 C 1.34779 * 119.99938 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99863 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99854 * 180.02562 * 7 6 5 10 10 S 1.80995 * 109.47153 * 179.97438 * 9 7 6 11 11 C 1.76200 * 100.00173 * 180.02562 * 10 9 7 12 12 H 1.07997 * 119.99738 * 0.02562 * 11 10 9 13 13 C 1.38796 * 120.00109 * 180.02562 * 11 10 9 14 14 N 1.31630 * 119.99952 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99965 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47086 * 59.99837 * 15 13 11 17 17 H 1.48503 * 109.47001 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47085 * 299.99808 * 15 13 11 19 19 C 1.46899 * 110.99837 * 288.24305 * 3 2 1 20 20 C 1.50705 * 109.46873 * 164.22083 * 19 3 2 21 21 C 1.41381 * 128.00517 * 97.67156 * 20 19 3 22 22 C 1.50704 * 126.80229 * 359.93631 * 21 20 19 23 23 N 1.30175 * 106.39471 * 179.97438 * 21 20 19 24 24 O 1.20920 * 111.60303 * 0.02562 * 23 21 20 25 25 C 1.34035 * 111.56836 * 359.75838 * 24 23 21 26 26 C 1.50701 * 126.77925 * 180.29019 * 25 24 23 27 27 H 1.08999 * 109.46964 * 186.14806 * 1 2 3 28 28 H 1.09004 * 109.47466 * 306.15303 * 1 2 3 29 29 H 1.09002 * 109.47226 * 66.14814 * 1 2 3 30 30 H 1.08993 * 109.46994 * 239.99813 * 2 1 3 31 31 H 1.09003 * 109.47083 * 119.99456 * 2 1 3 32 32 H 1.08997 * 109.47242 * 53.94785 * 4 3 2 33 33 H 1.08998 * 109.47166 * 173.95314 * 4 3 2 34 34 H 1.09008 * 109.47127 * 300.00157 * 5 4 3 35 35 H 1.08998 * 109.47045 * 60.00054 * 5 4 3 36 36 H 0.96996 * 119.99931 * 0.02562 * 6 5 4 37 37 H 1.08996 * 109.46971 * 300.00405 * 9 7 6 38 38 H 1.09008 * 109.47078 * 60.00182 * 9 7 6 39 39 H 0.97008 * 119.99726 * 179.97438 * 14 13 11 40 40 H 1.09004 * 109.47103 * 284.21789 * 19 3 2 41 41 H 1.08999 * 109.47108 * 44.22362 * 19 3 2 42 42 H 1.08997 * 109.47230 * 90.00405 * 22 21 20 43 43 H 1.09008 * 109.46942 * 210.00356 * 22 21 20 44 44 H 1.08997 * 109.47411 * 329.99954 * 22 21 20 45 45 H 1.09001 * 109.47097 * 274.58003 * 26 25 24 46 46 H 1.08999 * 109.46955 * 34.57471 * 26 25 24 47 47 H 1.08998 * 109.47622 * 154.57607 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4398 1.4413 0.3713 5 6 3.6046 0.9970 1.8261 6 7 5.0208 1.0537 2.1966 7 6 5.4065 0.7048 3.4400 8 8 4.5813 0.3435 4.2519 9 6 6.8633 0.7637 3.8213 10 16 7.0581 0.2394 5.5427 11 6 8.8040 0.4011 5.7162 12 1 9.4003 0.7413 4.8825 13 6 9.4131 0.0913 6.9243 14 7 8.6862 -0.3229 7.9406 15 14 11.2642 0.2621 7.1080 16 1 11.6583 1.6720 6.8586 17 1 11.6629 -0.1269 8.4845 18 1 11.9426 -0.6225 6.1269 19 6 1.7903 2.0244 -1.3025 20 6 1.9360 3.5178 -1.1616 21 6 3.0669 4.3137 -1.4553 22 6 4.3958 3.8351 -1.9808 23 7 2.7332 5.5417 -1.1812 24 8 1.5970 5.6139 -0.7738 25 6 1.0122 4.4088 -0.7288 26 6 -0.3949 4.1048 -0.2829 27 1 -0.3633 -1.0218 0.1101 28 1 -0.3634 0.6063 0.8298 29 1 -0.3634 0.4156 -0.9399 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 4.0117 0.7784 -0.2780 33 1 3.8043 2.4625 0.2598 34 1 3.0326 1.6599 2.4755 35 1 3.2401 -0.0241 1.9376 36 1 5.6808 1.3431 1.5473 37 1 7.4358 0.1011 3.1723 38 1 7.2271 1.7852 3.7096 39 1 9.1120 -0.5397 8.7848 40 1 2.5204 1.6545 -2.0224 41 1 0.7847 1.7888 -1.6509 42 1 4.3796 3.8426 -3.0707 43 1 5.1866 4.4955 -1.6246 44 1 4.5826 2.8211 -1.6272 45 1 -0.4151 3.9862 0.8005 46 1 -1.0525 4.9249 -0.5710 47 1 -0.7348 3.1833 -0.7556 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480963718.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:09:52 Heat of formation + Delta-G solvation = -6.120982 kcal Electronic energy + Delta-G solvation = -27091.080958 eV Core-core repulsion = 23209.347139 eV Total energy + Delta-G solvation = -3881.733819 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.87345 -40.70281 -39.29977 -36.16834 -35.54986 -34.58743 -34.38029 -32.27874 -31.27032 -29.95311 -29.46115 -28.25222 -27.65076 -26.39960 -23.95612 -22.86386 -21.89630 -21.55964 -20.82647 -19.82462 -18.66638 -18.04302 -17.86190 -17.36203 -16.89043 -16.87910 -16.48285 -16.16064 -15.84399 -15.56645 -15.21826 -14.91285 -14.70633 -14.51158 -14.32311 -14.28050 -14.00688 -13.81065 -13.67037 -13.46397 -13.27323 -13.17488 -13.07209 -12.87623 -12.82184 -12.78200 -12.61995 -12.44176 -12.10770 -11.80877 -11.75493 -11.65114 -11.13225 -11.02002 -10.82462 -10.28755 -10.13992 -10.07876 -9.34031 -8.67415 -8.34786 -6.13170 0.54871 1.19746 1.26706 1.43707 1.46182 1.55891 1.59266 2.18033 2.26155 2.27580 2.99204 3.06070 3.26245 3.33422 3.56278 3.76357 3.89507 3.95787 4.01153 4.07469 4.21812 4.29181 4.37186 4.44458 4.46232 4.49702 4.56792 4.60823 4.64656 4.72211 4.74459 4.78076 4.81842 4.86129 4.93351 5.00050 5.09152 5.15956 5.17835 5.33119 5.38414 5.41303 5.46977 6.00092 6.08444 6.19351 6.47126 7.06269 7.21900 7.35485 8.74222 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015710 B = 0.002091 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.879432 B =13389.495275 C =14299.633814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.043 3.957 3 N -0.538 5.538 4 C 0.055 3.945 5 C 0.128 3.872 6 N -0.713 5.713 7 C 0.534 3.466 8 O -0.565 6.565 9 C -0.129 4.129 10 S -0.152 6.152 11 C -0.547 4.547 12 H 0.083 0.917 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.999 3.001 16 H -0.263 1.263 17 H -0.279 1.279 18 H -0.261 1.261 19 C 0.139 3.861 20 C -0.206 4.206 21 C 0.018 3.982 22 C -0.080 4.080 23 N -0.406 5.406 24 O 0.072 5.928 25 C -0.012 4.012 26 C -0.070 4.070 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.416 0.584 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.271 0.729 40 H 0.062 0.938 41 H 0.110 0.890 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.052 4.982 -27.443 32.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 N -0.263 5.263 4 C -0.074 4.074 5 C 0.004 3.996 6 N -0.367 5.367 7 C 0.320 3.680 8 O -0.443 6.443 9 C -0.280 4.280 10 S 0.075 5.925 11 C -0.695 4.695 12 H 0.101 0.899 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.820 3.180 16 H -0.187 1.187 17 H -0.204 1.204 18 H -0.185 1.185 19 C 0.012 3.988 20 C -0.210 4.210 21 C -0.142 4.142 22 C -0.138 4.138 23 N -0.116 5.116 24 O 0.012 5.988 25 C -0.076 4.076 26 C -0.127 4.127 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.253 0.747 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.127 0.873 42 H 0.112 0.888 43 H 0.092 0.908 44 H 0.113 0.887 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.111 5.759 -25.665 31.935 hybrid contribution 2.506 -0.373 -1.051 2.743 sum -15.604 5.386 -26.715 31.404 Atomic orbital electron populations 1.21778 0.93600 1.02250 1.02623 1.22251 0.97268 0.87495 1.01430 1.61821 1.16420 1.18223 1.29842 1.22167 0.89813 1.01926 0.93473 1.21252 0.80799 1.01282 0.96238 1.45628 1.09865 1.68648 1.12567 1.20064 0.89732 0.76104 0.82132 1.90695 1.54763 1.47618 1.51228 1.23363 0.96017 1.06456 1.02163 1.85588 1.10529 1.87542 1.08819 1.23170 0.92222 1.52366 1.01710 0.89871 1.26140 1.04999 0.93806 0.94262 1.70181 1.38313 1.43039 1.03239 0.85003 0.75968 0.79308 0.77709 1.18745 1.20395 1.18532 1.20320 1.03644 0.85397 0.89459 1.20981 0.92795 0.98267 1.08985 1.23971 0.99914 0.88909 1.01371 1.20357 0.88960 1.02329 1.02121 1.73855 0.96720 1.22643 1.18349 1.84760 1.19504 1.31825 1.62742 1.24943 0.99522 0.83511 0.99593 1.20495 0.84831 1.04332 1.03008 0.91687 0.92404 0.91408 0.93221 0.91420 0.92014 0.90291 0.93075 0.91943 0.74748 0.86945 0.87352 0.91979 0.91991 0.87251 0.88763 0.90786 0.88694 0.89059 0.88843 0.87261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.86 71.98 0.71 -0.56 16 2 C 0.04 0.48 5.56 86.30 0.48 0.96 16 3 N -0.54 -6.92 4.41 -900.79 -3.97 -10.90 16 4 C 0.05 0.80 4.39 86.30 0.38 1.18 16 5 C 0.13 2.90 5.64 86.38 0.49 3.39 16 6 N -0.71 -17.86 5.56 -463.05 -2.57 -20.43 16 7 C 0.53 19.83 7.85 87.66 0.69 20.52 16 8 O -0.56 -26.56 15.86 -3.03 -0.05 -26.61 16 9 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 10 S -0.15 -8.49 20.57 -56.49 -1.16 -9.66 16 11 C -0.55 -31.33 9.50 67.95 0.65 -30.68 16 12 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 13 C 0.01 0.73 5.49 84.86 0.47 1.19 16 14 N -0.91 -56.30 13.22 21.65 0.29 -56.01 16 15 Si 1.00 43.67 29.55 68.60 2.03 45.70 16 16 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 17 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 19 C 0.14 1.39 5.08 85.56 0.43 1.82 16 20 C -0.21 -3.10 5.13 -19.73 -0.10 -3.20 16 21 C 0.02 0.32 6.66 43.58 0.29 0.61 16 22 C -0.08 -0.98 10.03 71.24 0.71 -0.27 16 23 N -0.41 -9.67 12.07 -49.56 -0.60 -10.27 16 24 O 0.07 1.58 11.20 71.68 0.80 2.38 16 25 C -0.01 -0.18 7.49 25.04 0.19 0.00 16 26 C -0.07 -0.56 10.33 71.24 0.74 0.17 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.37 6.75 -2.39 -0.02 0.35 16 30 H 0.05 0.45 8.06 -2.39 -0.02 0.43 16 31 H 0.07 1.01 5.94 -2.39 -0.01 0.99 16 32 H 0.06 0.70 8.12 -2.39 -0.02 0.68 16 33 H 0.08 1.25 5.53 -2.39 -0.01 1.24 16 34 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.06 1.51 6.28 -2.39 -0.02 1.50 16 36 H 0.42 7.33 8.47 -92.71 -0.79 6.55 16 37 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 38 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 39 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 40 H 0.06 0.50 7.97 -2.38 -0.02 0.48 16 41 H 0.11 0.71 5.85 -2.39 -0.01 0.69 16 42 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 44 H 0.09 0.82 6.72 -2.39 -0.02 0.81 16 45 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.11 0.46 7.50 -2.39 -0.02 0.44 16 Total: -1.00 -81.56 399.52 1.52 -80.04 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.20 Total: 15.26 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 6.55 Total: -9.52 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -6.86 Total: -97.61 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: 0.75 Total: -24.22 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.66 kcal Total: -81.56 1.52 -80.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480963718.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.921 kcal (2) G-P(sol) polarization free energy of solvation -81.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds