Wall clock time and date at job start Wed Apr 1 2020 00:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46985 * 2 1 4 4 N 1.46904 * 109.46897 * 240.00494 * 2 1 3 5 5 C 1.46893 * 110.99976 * 87.98851 * 4 2 1 6 6 C 1.52999 * 115.55030 * 60.70010 * 5 4 2 7 7 N 1.46502 * 109.46950 * 36.46807 * 6 5 4 8 8 C 1.34777 * 120.00001 * 180.67861 * 7 6 5 9 9 O 1.21287 * 120.00097 * 359.72503 * 8 7 6 10 10 C 1.50698 * 120.00057 * 179.97438 * 8 7 6 11 11 S 1.80999 * 109.47143 * 179.72526 * 10 8 7 12 12 C 1.76198 * 100.00014 * 179.97438 * 11 10 8 13 13 H 1.07996 * 120.00194 * 0.02562 * 12 11 10 14 14 C 1.38805 * 120.00111 * 179.97438 * 12 11 10 15 15 N 1.31624 * 119.99981 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00028 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47178 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46998 * 120.00154 * 16 14 12 19 19 H 1.48495 * 109.46969 * 239.99841 * 16 14 12 20 20 C 1.53006 * 117.51793 * 206.40183 * 5 4 2 21 21 C 1.52995 * 117.50138 * 275.03093 * 5 4 2 22 22 C 1.50692 * 109.47201 * 120.00270 * 2 1 3 23 23 O 1.21286 * 119.99787 * 119.99916 * 22 2 1 24 24 N 1.34775 * 120.00353 * 299.99909 * 22 2 1 25 25 C 1.46495 * 120.00275 * 180.02562 * 24 22 2 26 26 C 1.53002 * 117.50317 * 223.62441 * 25 24 22 27 27 C 1.53005 * 117.50156 * 154.99786 * 25 24 22 28 28 H 1.09007 * 109.47072 * 297.08508 * 1 2 3 29 29 H 1.08999 * 109.47236 * 57.08596 * 1 2 3 30 30 H 1.09000 * 109.47477 * 177.08802 * 1 2 3 31 31 H 1.00901 * 110.99861 * 211.94585 * 4 2 1 32 32 H 1.08993 * 109.47384 * 276.46221 * 6 5 4 33 33 H 1.09003 * 109.47382 * 156.46650 * 6 5 4 34 34 H 0.97000 * 120.00224 * 0.67271 * 7 6 5 35 35 H 1.09005 * 109.46845 * 299.72134 * 10 8 7 36 36 H 1.08994 * 109.47289 * 59.72461 * 10 8 7 37 37 H 0.97003 * 120.00523 * 179.97438 * 15 14 12 38 38 H 1.08996 * 117.49619 * 214.97665 * 20 5 4 39 39 H 1.08995 * 117.49811 * 359.97438 * 20 5 4 40 40 H 1.09000 * 117.50071 * 359.97438 * 21 5 4 41 41 H 1.09002 * 117.50670 * 145.00164 * 21 5 4 42 42 H 0.97000 * 120.00114 * 0.02562 * 24 22 2 43 43 H 1.09002 * 115.55177 * 9.32845 * 25 24 22 44 44 H 1.09007 * 117.49497 * 359.97438 * 26 25 24 45 45 H 1.08993 * 117.50691 * 145.02212 * 26 25 24 46 46 H 1.08992 * 117.50194 * 214.97492 * 27 25 24 47 47 H 1.09000 * 117.49673 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.1497 0.2384 -2.3284 6 6 3.1241 1.3990 -2.1179 7 7 4.2742 0.9355 -1.3375 8 6 5.2612 1.7953 -1.0163 9 8 5.1997 2.9515 -1.3775 10 6 6.4438 1.3187 -0.2131 11 16 7.5910 2.6945 0.0460 12 6 8.8402 1.8788 0.9836 13 1 8.7382 0.8305 1.2223 14 6 9.9558 2.5834 1.4144 15 7 10.0804 3.8609 1.1230 16 14 11.2805 1.7184 2.4077 17 1 10.9056 0.2942 2.5985 18 1 12.5737 1.7965 1.6820 19 1 11.4155 2.3769 3.7318 20 6 2.0363 -0.3417 -3.7397 21 6 0.9000 0.5089 -3.1687 22 6 2.0323 -0.7104 1.2304 23 8 2.7296 -1.6965 1.1190 24 7 1.7068 -0.2501 2.4545 25 6 2.1956 -0.9404 3.6506 26 6 1.2038 -1.1595 4.7949 27 6 2.3195 -0.1222 4.9375 28 1 -0.3633 0.4679 0.9150 29 1 -0.3634 0.5584 -0.8627 30 1 -0.3634 -1.0263 -0.0522 31 1 2.8937 -1.1613 -1.0149 32 1 2.6210 2.2031 -1.5810 33 1 3.4660 1.7666 -3.0854 34 1 4.3253 0.0099 -1.0520 35 1 6.1009 0.9449 0.7517 36 1 6.9513 0.5193 -0.7530 37 1 10.8599 4.3534 1.4244 38 1 2.6561 0.1034 -4.5180 39 1 1.8656 -1.4144 -3.8307 40 1 -0.0186 -0.0041 -2.8841 41 1 0.7720 1.5136 -3.5715 42 1 1.1488 0.5384 2.5436 43 1 2.9402 -1.7166 3.4741 44 1 0.1876 -0.7895 4.6578 45 1 1.2957 -2.0799 5.3713 46 1 3.1453 -0.3604 5.6078 47 1 2.0370 0.9297 4.8943 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483716977.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:22 Heat of formation + Delta-G solvation = -15.965128 kcal Electronic energy + Delta-G solvation = -27669.031235 eV Core-core repulsion = 23786.870542 eV Total energy + Delta-G solvation = -3882.160693 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.59343 -39.50503 -38.31225 -37.32140 -34.51786 -34.00112 -33.02074 -32.43122 -29.90007 -29.40393 -26.33327 -25.40700 -24.85003 -22.76181 -22.71137 -21.99855 -20.73903 -20.41897 -19.69516 -18.09898 -17.67315 -17.01676 -16.60411 -16.36838 -15.87662 -15.41951 -15.15207 -14.98625 -14.80499 -14.69410 -14.43475 -13.92117 -13.80920 -13.48979 -13.29455 -13.05619 -12.93849 -12.60436 -12.58478 -12.34444 -12.04089 -11.92570 -11.87053 -11.67156 -11.62483 -11.07055 -11.02029 -10.90589 -10.85309 -10.74420 -10.25953 -9.98935 -9.81410 -9.45480 -9.11618 -9.08308 -8.95808 -8.94196 -8.24672 -6.50749 -6.22204 -3.92626 2.25325 2.61755 2.95069 3.04017 3.21518 3.26415 3.31340 3.44707 3.56939 3.61110 3.74590 4.20107 4.27256 4.36409 4.43620 4.60436 4.64484 4.65826 4.72725 4.76667 4.93483 5.06924 5.13211 5.14010 5.29475 5.34865 5.37777 5.45633 5.48864 5.51422 5.55205 5.60651 5.68363 5.73251 5.74174 5.82464 5.88024 5.93285 6.14073 6.14745 6.44607 6.58747 6.95887 7.13532 7.58894 7.60895 7.86069 8.35700 8.54034 9.23554 10.85305 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008567 B = 0.003348 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3267.572486 B = 8361.407318 C =10912.014422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.065 3.935 3 H 0.082 0.918 4 N -0.630 5.630 5 C 0.014 3.986 6 C 0.132 3.868 7 N -0.740 5.740 8 C 0.534 3.466 9 O -0.516 6.516 10 C -0.153 4.153 11 S -0.059 6.059 12 C -0.535 4.535 13 H 0.073 0.927 14 C 0.074 3.926 15 N -0.868 5.868 16 Si 0.918 3.082 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.280 1.280 20 C -0.151 4.151 21 C -0.151 4.151 22 C 0.518 3.482 23 O -0.529 6.529 24 N -0.699 5.699 25 C 0.079 3.921 26 C -0.193 4.193 27 C -0.187 4.187 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.357 0.643 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.394 0.606 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.268 0.732 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.402 0.598 43 H 0.139 0.861 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.106 0.894 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.925 -9.764 -0.527 25.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.047 4.047 3 H 0.099 0.901 4 N -0.266 5.266 5 C -0.079 4.079 6 C 0.005 3.995 7 N -0.396 5.396 8 C 0.320 3.680 9 O -0.390 6.390 10 C -0.304 4.304 11 S 0.168 5.832 12 C -0.683 4.683 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.503 5.503 16 Si 0.744 3.256 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.206 1.206 20 C -0.188 4.188 21 C -0.189 4.189 22 C 0.304 3.696 23 O -0.405 6.405 24 N -0.349 5.349 25 C -0.027 4.027 26 C -0.232 4.232 27 C -0.225 4.225 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.182 0.818 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.229 0.771 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.117 0.883 42 H 0.237 0.763 43 H 0.156 0.844 44 H 0.114 0.886 45 H 0.120 0.880 46 H 0.124 0.876 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -24.008 -8.627 -1.392 25.549 hybrid contribution 1.465 -1.395 1.655 2.613 sum -22.543 -10.022 0.263 24.671 Atomic orbital electron populations 1.21791 0.91987 1.03306 1.02287 1.21480 0.97716 0.97576 0.87976 0.90061 1.60362 1.36316 1.26940 1.02991 1.21707 1.00124 0.95695 0.90366 1.21230 0.85872 0.95315 0.97054 1.46046 1.22161 1.13652 1.57751 1.20320 0.82802 0.85541 0.79346 1.90703 1.77862 1.17726 1.52677 1.23529 0.98433 1.06798 1.01619 1.85344 1.17660 1.09554 1.70659 1.22916 1.07239 0.98709 1.39421 0.90871 1.24985 0.97659 0.94909 0.95966 1.70024 1.29000 1.07514 1.43799 0.86123 0.80607 0.79452 0.79383 1.19572 1.20529 1.20551 1.23164 1.01438 1.00643 0.93581 1.23111 0.92906 1.01368 1.01528 1.20687 0.79719 0.84538 0.84651 1.90708 1.37524 1.25924 1.86299 1.45302 1.53361 1.31454 1.04762 1.21628 1.00907 0.99777 0.80407 1.23426 0.95816 1.01489 1.02444 1.23398 1.01546 0.97699 0.99887 0.92281 0.90957 0.91339 0.81797 0.91272 0.90622 0.77070 0.89384 0.89163 0.92247 0.88197 0.87862 0.87745 0.88338 0.76307 0.84350 0.88575 0.87974 0.87586 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.29 37.16 0.35 -0.57 16 2 C 0.07 0.59 2.83 -68.87 -0.20 0.40 16 3 H 0.08 0.79 6.45 -51.93 -0.33 0.45 16 4 N -0.63 -6.11 6.09 -94.26 -0.57 -6.69 16 5 C 0.01 0.12 2.08 -131.61 -0.27 -0.15 16 6 C 0.13 1.54 4.89 -4.04 -0.02 1.52 16 7 N -0.74 -10.34 5.32 -60.29 -0.32 -10.67 16 8 C 0.53 10.17 7.85 -10.99 -0.09 10.08 16 9 O -0.52 -11.70 15.86 5.55 0.09 -11.61 16 10 C -0.15 -3.21 6.16 36.00 0.22 -2.99 16 11 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 12 C -0.53 -15.45 9.50 30.94 0.29 -15.15 16 13 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 14 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 15 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16 16 Si 0.92 21.64 29.55 -169.99 -5.02 16.61 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C -0.15 -1.19 10.10 -26.73 -0.27 -1.46 16 21 C -0.15 -1.08 9.25 -26.73 -0.25 -1.32 16 22 C 0.52 5.71 7.18 -10.99 -0.08 5.63 16 23 O -0.53 -7.62 15.16 5.55 0.08 -7.54 16 24 N -0.70 -6.22 5.44 -53.81 -0.29 -6.52 16 25 C 0.08 0.73 6.43 -67.93 -0.44 0.29 16 26 C -0.19 -1.34 10.46 -26.73 -0.28 -1.62 16 27 C -0.19 -1.45 10.46 -26.72 -0.28 -1.73 16 28 H 0.06 0.30 7.48 -51.93 -0.39 -0.09 16 29 H 0.07 0.44 6.50 -51.93 -0.34 0.11 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.36 4.03 5.73 -39.29 -0.23 3.80 16 32 H 0.07 0.84 7.56 -51.93 -0.39 0.45 16 33 H 0.08 0.93 7.92 -51.93 -0.41 0.52 16 34 H 0.39 5.01 6.72 -40.82 -0.27 4.73 16 35 H 0.09 1.76 8.14 -51.91 -0.42 1.33 16 36 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 37 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.10 0.76 8.06 -51.93 -0.42 0.34 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.10 0.69 7.42 -51.93 -0.39 0.31 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.40 2.60 8.21 -40.82 -0.33 2.26 16 43 H 0.14 1.52 7.40 -51.93 -0.38 1.13 16 44 H 0.10 0.58 8.14 -51.92 -0.42 0.15 16 45 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 403.36 15.07 6.08 6.08 Total: -1.00 -35.40 403.36 -10.08 -45.47 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -7.24 Total: 9.27 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -1.40 Total: -5.05 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.45 Total: -49.42 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.17 Total: -19.15 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.40 -10.08 -45.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483716977.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.509 kcal (2) G-P(sol) polarization free energy of solvation -35.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds