Wall clock time and date at job start Wed Apr 1 2020 00:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46985 * 2 1 4 4 N 1.46904 * 109.46897 * 240.00494 * 2 1 3 5 5 C 1.46893 * 110.99976 * 87.98851 * 4 2 1 6 6 C 1.52999 * 115.55030 * 60.70010 * 5 4 2 7 7 N 1.46502 * 109.46950 * 36.46807 * 6 5 4 8 8 C 1.34777 * 120.00001 * 180.67861 * 7 6 5 9 9 O 1.21287 * 120.00097 * 359.72503 * 8 7 6 10 10 C 1.50698 * 120.00057 * 179.97438 * 8 7 6 11 11 S 1.80999 * 109.47143 * 179.72526 * 10 8 7 12 12 C 1.76198 * 100.00014 * 179.97438 * 11 10 8 13 13 H 1.07996 * 120.00194 * 0.02562 * 12 11 10 14 14 C 1.38805 * 120.00111 * 179.97438 * 12 11 10 15 15 N 1.31624 * 119.99981 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00028 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47178 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46998 * 120.00154 * 16 14 12 19 19 H 1.48495 * 109.46969 * 239.99841 * 16 14 12 20 20 C 1.53006 * 117.51793 * 206.40183 * 5 4 2 21 21 C 1.52995 * 117.50138 * 275.03093 * 5 4 2 22 22 C 1.50692 * 109.47201 * 120.00270 * 2 1 3 23 23 O 1.21286 * 119.99787 * 119.99916 * 22 2 1 24 24 N 1.34775 * 120.00353 * 299.99909 * 22 2 1 25 25 C 1.46495 * 120.00275 * 180.02562 * 24 22 2 26 26 C 1.53002 * 117.50317 * 223.62441 * 25 24 22 27 27 C 1.53005 * 117.50156 * 154.99786 * 25 24 22 28 28 H 1.09007 * 109.47072 * 297.08508 * 1 2 3 29 29 H 1.08999 * 109.47236 * 57.08596 * 1 2 3 30 30 H 1.09000 * 109.47477 * 177.08802 * 1 2 3 31 31 H 1.00901 * 110.99861 * 211.94585 * 4 2 1 32 32 H 1.08993 * 109.47384 * 276.46221 * 6 5 4 33 33 H 1.09003 * 109.47382 * 156.46650 * 6 5 4 34 34 H 0.97000 * 120.00224 * 0.67271 * 7 6 5 35 35 H 1.09005 * 109.46845 * 299.72134 * 10 8 7 36 36 H 1.08994 * 109.47289 * 59.72461 * 10 8 7 37 37 H 0.97003 * 120.00523 * 179.97438 * 15 14 12 38 38 H 1.08996 * 117.49619 * 214.97665 * 20 5 4 39 39 H 1.08995 * 117.49811 * 359.97438 * 20 5 4 40 40 H 1.09000 * 117.50071 * 359.97438 * 21 5 4 41 41 H 1.09002 * 117.50670 * 145.00164 * 21 5 4 42 42 H 0.97000 * 120.00114 * 0.02562 * 24 22 2 43 43 H 1.09002 * 115.55177 * 9.32845 * 25 24 22 44 44 H 1.09007 * 117.49497 * 359.97438 * 26 25 24 45 45 H 1.08993 * 117.50691 * 145.02212 * 26 25 24 46 46 H 1.08992 * 117.50194 * 214.97492 * 27 25 24 47 47 H 1.09000 * 117.49673 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.1497 0.2384 -2.3284 6 6 3.1241 1.3990 -2.1179 7 7 4.2742 0.9355 -1.3375 8 6 5.2612 1.7953 -1.0163 9 8 5.1997 2.9515 -1.3775 10 6 6.4438 1.3187 -0.2131 11 16 7.5910 2.6945 0.0460 12 6 8.8402 1.8788 0.9836 13 1 8.7382 0.8305 1.2223 14 6 9.9558 2.5834 1.4144 15 7 10.0804 3.8609 1.1230 16 14 11.2805 1.7184 2.4077 17 1 10.9056 0.2942 2.5985 18 1 12.5737 1.7965 1.6820 19 1 11.4155 2.3769 3.7318 20 6 2.0363 -0.3417 -3.7397 21 6 0.9000 0.5089 -3.1687 22 6 2.0323 -0.7104 1.2304 23 8 2.7296 -1.6965 1.1190 24 7 1.7068 -0.2501 2.4545 25 6 2.1956 -0.9404 3.6506 26 6 1.2038 -1.1595 4.7949 27 6 2.3195 -0.1222 4.9375 28 1 -0.3633 0.4679 0.9150 29 1 -0.3634 0.5584 -0.8627 30 1 -0.3634 -1.0263 -0.0522 31 1 2.8937 -1.1613 -1.0149 32 1 2.6210 2.2031 -1.5810 33 1 3.4660 1.7666 -3.0854 34 1 4.3253 0.0099 -1.0520 35 1 6.1009 0.9449 0.7517 36 1 6.9513 0.5193 -0.7530 37 1 10.8599 4.3534 1.4244 38 1 2.6561 0.1034 -4.5180 39 1 1.8656 -1.4144 -3.8307 40 1 -0.0186 -0.0041 -2.8841 41 1 0.7720 1.5136 -3.5715 42 1 1.1488 0.5384 2.5436 43 1 2.9402 -1.7166 3.4741 44 1 0.1876 -0.7895 4.6578 45 1 1.2957 -2.0799 5.3713 46 1 3.1453 -0.3604 5.6078 47 1 2.0370 0.9297 4.8943 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483716977.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:21 Heat of formation + Delta-G solvation = -42.587380 kcal Electronic energy + Delta-G solvation = -27670.185662 eV Core-core repulsion = 23786.870542 eV Total energy + Delta-G solvation = -3883.315121 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.46927 -40.71279 -39.32839 -38.05839 -35.30830 -35.25853 -34.62208 -33.76506 -31.37701 -30.17413 -27.87115 -27.24286 -25.55673 -23.37358 -23.29871 -22.69767 -21.88486 -21.51677 -20.54684 -19.85490 -18.69532 -17.94420 -17.76866 -17.57436 -16.91742 -16.89268 -16.52103 -16.24244 -15.98770 -15.66935 -15.42850 -15.24659 -14.74758 -14.65517 -14.55832 -14.38198 -13.84807 -13.64822 -13.53243 -13.20992 -13.17320 -13.10065 -12.93908 -12.66396 -12.64218 -12.52771 -12.37917 -12.22669 -11.77456 -11.58310 -11.50983 -11.19157 -11.14427 -10.94806 -10.79325 -10.34884 -10.20463 -9.85795 -9.69970 -8.71145 -8.38580 -6.16896 1.20915 1.38408 1.41773 1.42469 1.48316 1.54690 1.89339 2.12252 2.23273 2.80518 2.87135 2.95263 2.95593 3.25891 3.53386 3.55031 3.77110 3.82242 3.95809 4.01003 4.02606 4.04777 4.10907 4.16591 4.24880 4.40445 4.46984 4.60395 4.63496 4.73480 4.75427 4.83074 4.85176 4.93289 4.99500 5.09984 5.17432 5.24591 5.27790 5.36607 5.38371 5.42675 5.81997 6.09601 6.16303 6.28347 6.40562 7.02929 7.06817 7.08815 8.70902 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008567 B = 0.003348 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3267.572486 B = 8361.407318 C =10912.014422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.069 3.931 3 H 0.077 0.923 4 N -0.629 5.629 5 C 0.004 3.996 6 C 0.132 3.868 7 N -0.715 5.715 8 C 0.538 3.462 9 O -0.556 6.556 10 C -0.132 4.132 11 S -0.136 6.136 12 C -0.550 4.550 13 H 0.078 0.922 14 C 0.018 3.982 15 N -0.909 5.909 16 Si 0.997 3.003 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.271 1.271 20 C -0.149 4.149 21 C -0.131 4.131 22 C 0.511 3.489 23 O -0.570 6.570 24 N -0.688 5.688 25 C 0.051 3.949 26 C -0.171 4.171 27 C -0.185 4.185 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.347 0.653 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.403 0.597 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.272 0.728 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.110 0.890 42 H 0.415 0.585 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.109 0.891 46 H 0.105 0.895 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.591 -10.937 -0.054 27.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.044 4.044 3 H 0.094 0.906 4 N -0.263 5.263 5 C -0.088 4.088 6 C 0.006 3.994 7 N -0.370 5.370 8 C 0.324 3.676 9 O -0.434 6.434 10 C -0.283 4.283 11 S 0.091 5.909 12 C -0.698 4.698 13 H 0.096 0.904 14 C -0.188 4.188 15 N -0.545 5.545 16 Si 0.819 3.181 17 H -0.184 1.184 18 H -0.197 1.197 19 H -0.196 1.196 20 C -0.186 4.186 21 C -0.169 4.169 22 C 0.298 3.702 23 O -0.449 6.449 24 N -0.338 5.338 25 C -0.055 4.055 26 C -0.210 4.210 27 C -0.223 4.223 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.170 0.830 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.240 0.760 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.082 0.918 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.252 0.748 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.128 0.872 46 H 0.123 0.877 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -25.741 -9.812 -0.911 27.562 hybrid contribution 1.875 -1.069 1.489 2.622 sum -23.866 -10.881 0.578 26.236 Atomic orbital electron populations 1.21790 0.89862 1.03310 1.03836 1.21546 0.99239 0.96649 0.86917 0.90554 1.60464 1.35518 1.26940 1.03398 1.21617 1.01183 0.95166 0.90882 1.21395 0.85195 0.96565 0.96219 1.45811 1.21431 1.13289 1.56487 1.19951 0.83173 0.85380 0.79129 1.90691 1.78771 1.19396 1.54494 1.23362 0.97876 1.04166 1.02905 1.85433 1.20067 1.14310 1.71107 1.23220 1.07831 0.98980 1.39786 0.90408 1.26082 1.00144 0.95614 0.96918 1.70167 1.30024 1.09304 1.45001 0.84935 0.77046 0.78514 0.77649 1.18436 1.19676 1.19592 1.23228 1.01849 1.01019 0.92520 1.23212 0.92373 1.01915 0.99360 1.21094 0.79231 0.84189 0.85672 1.90686 1.39478 1.27837 1.86901 1.45235 1.52812 1.31531 1.04229 1.21620 1.02305 1.00449 0.81158 1.23483 0.96007 1.01440 1.00041 1.23454 1.02065 0.98276 0.98491 0.90404 0.89856 0.91972 0.83047 0.91493 0.90944 0.76017 0.88313 0.87753 0.91847 0.87896 0.87632 0.86670 0.87178 0.74800 0.86774 0.87014 0.87230 0.87687 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 9.29 71.98 0.67 -0.79 16 2 C 0.07 1.17 2.83 44.17 0.13 1.30 16 3 H 0.08 1.38 6.45 -2.39 -0.02 1.37 16 4 N -0.63 -11.44 6.09 -452.12 -2.75 -14.20 16 5 C 0.00 0.07 2.08 3.53 0.01 0.07 16 6 C 0.13 2.94 4.89 86.38 0.42 3.37 16 7 N -0.72 -19.64 5.32 -463.06 -2.46 -22.10 16 8 C 0.54 20.60 7.85 87.66 0.69 21.29 16 9 O -0.56 -25.71 15.86 -3.05 -0.05 -25.76 16 10 C -0.13 -5.58 6.16 71.24 0.44 -5.14 16 11 S -0.14 -7.70 20.57 -56.49 -1.16 -8.86 16 12 C -0.55 -32.19 9.50 67.96 0.65 -31.54 16 13 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 14 C 0.02 1.01 5.49 84.86 0.47 1.48 16 15 N -0.91 -55.97 13.22 21.65 0.29 -55.68 16 16 Si 1.00 44.27 29.55 68.60 2.03 46.30 16 17 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 20 C -0.15 -2.04 10.10 30.60 0.31 -1.73 16 21 C -0.13 -1.50 9.25 30.59 0.28 -1.22 16 22 C 0.51 11.07 7.18 87.65 0.63 11.69 16 23 O -0.57 -16.71 15.16 -3.05 -0.05 -16.76 16 24 N -0.69 -11.70 5.44 -442.54 -2.41 -14.11 16 25 C 0.05 0.92 6.43 44.99 0.29 1.21 16 26 C -0.17 -2.08 10.46 30.60 0.32 -1.76 16 27 C -0.18 -2.65 10.46 30.60 0.32 -2.33 16 28 H 0.08 0.58 7.48 -2.38 -0.02 0.56 16 29 H 0.08 0.77 6.50 -2.39 -0.02 0.75 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.35 7.63 5.73 -89.69 -0.51 7.11 16 32 H 0.07 1.56 7.56 -2.39 -0.02 1.54 16 33 H 0.07 1.71 7.92 -2.39 -0.02 1.69 16 34 H 0.40 9.99 6.72 -92.71 -0.62 9.37 16 35 H 0.10 3.95 8.14 -2.39 -0.02 3.93 16 36 H 0.10 4.10 8.14 -2.40 -0.02 4.08 16 37 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 38 H 0.10 1.37 8.06 -2.39 -0.02 1.35 16 39 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.12 1.14 7.42 -2.39 -0.02 1.12 16 41 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.41 4.70 8.21 -92.71 -0.76 3.93 16 43 H 0.11 2.63 7.40 -2.39 -0.02 2.62 16 44 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 45 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -78.81 403.36 -1.84 -80.65 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: -0.89 Total: 34.63 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 5.61 Total: -4.11 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -7.34 Total: -106.09 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -0.09 Total: -42.52 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: -7.70 SS G_CDS: -1.16 Total: -8.86 kcal Total: -78.81 -1.84 -80.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483716977.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.062 kcal (2) G-P(sol) polarization free energy of solvation -78.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds