Wall clock time and date at job start Wed Apr 1 2020 00:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47399 * 2 1 4 4 N 1.46901 * 109.46692 * 119.99733 * 2 1 3 5 5 C 1.46900 * 111.00154 * 274.18263 * 4 2 1 6 6 C 1.53005 * 115.54733 * 300.68621 * 5 4 2 7 7 N 1.46492 * 109.47552 * 324.51567 * 6 5 4 8 8 C 1.34772 * 120.00308 * 183.14984 * 7 6 5 9 9 O 1.21289 * 120.00025 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00321 * 179.97438 * 8 7 6 11 11 S 1.81000 * 109.47301 * 180.02562 * 10 8 7 12 12 C 1.76203 * 100.00276 * 180.02562 * 11 10 8 13 13 H 1.07998 * 119.99410 * 0.02562 * 12 11 10 14 14 C 1.38794 * 120.00250 * 179.97438 * 12 11 10 15 15 N 1.31625 * 120.00305 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99863 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47317 * 89.99853 * 16 14 12 18 18 H 1.48504 * 109.46958 * 209.99660 * 16 14 12 19 19 H 1.48497 * 109.47325 * 329.99759 * 16 14 12 20 20 C 1.52998 * 117.49753 * 155.02023 * 5 4 2 21 21 C 1.52998 * 117.49973 * 86.36219 * 5 4 2 22 22 C 1.50700 * 109.47201 * 239.99792 * 2 1 3 23 23 O 1.21287 * 119.99748 * 240.00298 * 22 2 1 24 24 N 1.34769 * 120.00010 * 59.72321 * 22 2 1 25 25 C 1.46500 * 120.00104 * 180.27496 * 24 22 2 26 26 C 1.53001 * 117.50228 * 223.62282 * 25 24 22 27 27 C 1.52994 * 60.00039 * 252.51293 * 26 25 24 28 28 H 1.08989 * 109.47460 * 177.39708 * 1 2 3 29 29 H 1.09009 * 109.47086 * 297.39851 * 1 2 3 30 30 H 1.09001 * 109.46777 * 57.39111 * 1 2 3 31 31 H 1.00901 * 110.99600 * 150.23259 * 4 2 1 32 32 H 1.09004 * 109.46809 * 84.52154 * 6 5 4 33 33 H 1.09002 * 109.47088 * 204.51516 * 6 5 4 34 34 H 0.97006 * 119.99845 * 3.16132 * 7 6 5 35 35 H 1.09001 * 109.47148 * 300.00329 * 10 8 7 36 36 H 1.09002 * 109.47032 * 60.00916 * 10 8 7 37 37 H 0.96994 * 120.00207 * 180.02562 * 15 14 12 38 38 H 1.08995 * 117.49965 * 0.02562 * 20 5 4 39 39 H 1.09002 * 117.49896 * 145.01897 * 20 5 4 40 40 H 1.09006 * 117.49444 * 214.98482 * 21 5 4 41 41 H 1.08996 * 117.49371 * 359.97438 * 21 5 4 42 42 H 0.97000 * 120.00079 * 0.28432 * 24 22 2 43 43 H 1.09000 * 115.54999 * 9.33555 * 25 24 22 44 44 H 1.09001 * 117.49656 * 0.02562 * 26 25 24 45 45 H 1.08996 * 117.49838 * 145.02018 * 26 25 24 46 46 H 1.09003 * 117.49947 * 252.50517 * 27 26 25 47 47 H 1.09004 * 117.52108 * 107.48534 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.1007 0.2272 2.3421 6 6 3.0169 1.4377 2.1511 7 7 4.1786 1.0489 1.3478 8 6 5.1582 1.9417 1.1033 9 8 5.0782 3.0670 1.5489 10 6 6.3536 1.5416 0.2775 11 16 7.4832 2.9482 0.1301 12 6 8.7508 2.2208 -0.8542 13 1 8.6650 1.1919 -1.1709 14 6 9.8590 2.9704 -1.2233 15 7 10.8062 2.4270 -1.9581 16 14 10.0071 4.7503 -0.6759 17 1 10.7117 4.8097 0.6299 18 1 10.7761 5.5173 -1.6887 19 1 8.6512 5.3390 -0.5339 20 6 2.0139 -0.3787 3.7443 21 6 0.8373 0.4231 3.1824 22 6 2.0323 -0.7104 -1.2304 23 8 2.7296 -1.6966 -1.1190 24 7 1.7022 -0.2533 -2.4545 25 6 2.1856 -0.9475 -3.6506 26 6 2.7183 -0.0885 -4.7992 27 6 1.3680 -0.7949 -4.9348 28 1 -0.3634 -1.0265 -0.0467 29 1 -0.3634 0.4729 0.9125 30 1 -0.3633 0.5538 -0.8657 31 1 2.9110 -1.1317 1.0249 32 1 2.4702 2.2300 1.6397 33 1 3.3519 1.7970 3.1241 34 1 4.2428 0.1489 0.9916 35 1 6.8684 0.7118 0.7616 36 1 6.0233 1.2350 -0.7150 37 1 11.5809 2.9507 -2.2157 38 1 1.8970 -1.4598 3.8189 39 1 2.6091 0.0852 4.5308 40 1 0.6589 1.4143 3.5995 41 1 -0.0542 -0.1302 2.8872 42 1 1.1446 0.5354 -2.5435 43 1 2.6698 -1.9078 -3.4734 44 1 2.7095 0.9932 -4.6647 45 1 3.5533 -0.4835 -5.3777 46 1 1.3146 -1.6547 -5.6027 47 1 0.4702 -0.1783 -4.8897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483716978.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:24 Heat of formation + Delta-G solvation = -15.097699 kcal Electronic energy + Delta-G solvation = -27708.875045 eV Core-core repulsion = 23826.751967 eV Total energy + Delta-G solvation = -3882.123078 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.63532 -39.58837 -38.39582 -37.32973 -34.55137 -34.10759 -33.03570 -32.44564 -30.01962 -29.47402 -26.41113 -25.56788 -24.88650 -22.79188 -22.69820 -22.00686 -20.76710 -20.54962 -19.74623 -18.12744 -17.70121 -17.01870 -16.64868 -16.49622 -15.96172 -15.50914 -15.18518 -15.04832 -14.88390 -14.72040 -14.52965 -13.91490 -13.77577 -13.58248 -13.35938 -13.08662 -13.02388 -12.80612 -12.61056 -12.39893 -12.09496 -12.00743 -11.90440 -11.69192 -11.64672 -11.28341 -11.02082 -10.94505 -10.84968 -10.62012 -10.29597 -10.02015 -9.87105 -9.59105 -9.12678 -9.08041 -9.00004 -8.97451 -8.52219 -6.93344 -6.29290 -4.01426 2.23156 2.58553 2.71272 2.89841 3.18821 3.32025 3.44141 3.48785 3.54467 3.59839 3.67146 4.24341 4.30417 4.32026 4.44134 4.58677 4.62012 4.65869 4.66706 4.72875 4.73254 4.91486 5.05233 5.09592 5.20250 5.29186 5.32266 5.35003 5.43825 5.44231 5.49477 5.60108 5.63737 5.65173 5.74363 5.76193 5.79317 5.89902 6.00287 6.13442 6.35254 6.53537 6.91323 7.11365 7.47156 7.84257 7.93851 8.39799 8.42219 9.16618 10.80043 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008890 B = 0.003393 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3148.924969 B = 8250.545254 C =10715.945212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.065 3.935 3 H 0.081 0.919 4 N -0.630 5.630 5 C 0.014 3.986 6 C 0.132 3.868 7 N -0.738 5.738 8 C 0.533 3.467 9 O -0.517 6.517 10 C -0.124 4.124 11 S -0.140 6.140 12 C -0.522 4.522 13 H 0.088 0.912 14 C 0.096 3.904 15 N -0.880 5.880 16 Si 0.856 3.144 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.236 1.236 20 C -0.151 4.151 21 C -0.151 4.151 22 C 0.518 3.482 23 O -0.528 6.528 24 N -0.699 5.699 25 C 0.078 3.922 26 C -0.190 4.190 27 C -0.189 4.189 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.358 0.642 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.395 0.605 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.271 0.729 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.402 0.598 43 H 0.139 0.861 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.944 -6.778 2.228 26.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.048 4.048 3 H 0.098 0.902 4 N -0.266 5.266 5 C -0.079 4.079 6 C 0.005 3.995 7 N -0.394 5.394 8 C 0.319 3.681 9 O -0.391 6.391 10 C -0.275 4.275 11 S 0.086 5.914 12 C -0.669 4.669 13 H 0.106 0.894 14 C -0.112 4.112 15 N -0.516 5.516 16 Si 0.681 3.319 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.160 1.160 20 C -0.188 4.188 21 C -0.189 4.189 22 C 0.304 3.696 23 O -0.403 6.403 24 N -0.349 5.349 25 C -0.028 4.028 26 C -0.229 4.229 27 C -0.227 4.227 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.182 0.818 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.230 0.770 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.237 0.763 43 H 0.156 0.844 44 H 0.118 0.882 45 H 0.124 0.876 46 H 0.122 0.878 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -25.989 -5.867 3.135 26.827 hybrid contribution 1.004 -0.122 -1.064 1.468 sum -24.985 -5.988 2.070 25.776 Atomic orbital electron populations 1.21790 0.91937 1.03097 1.02613 1.21493 0.97805 0.97473 0.88049 0.90170 1.60322 1.35104 1.28860 1.02323 1.21702 1.00867 0.95048 0.90266 1.21246 0.85905 0.95513 0.96806 1.46017 1.21823 1.15747 1.55845 1.20289 0.83017 0.84800 0.80027 1.90702 1.78051 1.19940 1.50454 1.23277 0.97075 1.05026 1.02111 1.84735 1.21024 1.15539 1.70058 1.22319 1.05665 1.02077 1.36868 0.89370 1.24701 0.94257 0.98666 0.93597 1.69936 1.09171 1.37277 1.35255 0.86744 0.81103 0.84735 0.79311 1.19178 1.19911 1.15978 1.23181 1.01190 1.00792 0.93656 1.23133 0.92451 1.01842 1.01461 1.20662 0.79769 0.84604 0.84614 1.90720 1.37451 1.25865 1.86306 1.45304 1.53290 1.31516 1.04768 1.21632 1.02299 0.98585 0.80305 1.23454 0.97568 0.99823 1.02054 1.23377 0.95626 1.03828 0.99909 0.91440 0.90813 0.92204 0.81804 0.91331 0.90392 0.76972 0.88422 0.88623 0.91930 0.87808 0.88184 0.88341 0.87689 0.76330 0.84355 0.88241 0.87643 0.87841 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.27 37.16 0.34 -0.54 16 2 C 0.06 0.56 2.76 -68.86 -0.19 0.37 16 3 H 0.08 0.73 6.34 -51.93 -0.33 0.41 16 4 N -0.63 -5.88 6.02 -94.25 -0.57 -6.45 16 5 C 0.01 0.12 2.10 -131.60 -0.28 -0.16 16 6 C 0.13 1.45 4.86 -4.04 -0.02 1.43 16 7 N -0.74 -9.75 5.14 -60.29 -0.31 -10.06 16 8 C 0.53 9.58 7.85 -10.99 -0.09 9.50 16 9 O -0.52 -11.06 15.86 5.55 0.09 -10.97 16 10 C -0.12 -2.49 6.16 36.00 0.22 -2.27 16 11 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16 12 C -0.52 -15.21 10.04 30.94 0.31 -14.90 16 13 H 0.09 2.70 8.03 -52.49 -0.42 2.28 16 14 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 15 N -0.88 -26.73 13.97 55.49 0.78 -25.96 16 16 Si 0.86 21.86 27.74 -169.99 -4.72 17.14 16 17 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 20 C -0.15 -1.14 10.11 -26.70 -0.27 -1.41 16 21 C -0.15 -1.02 9.11 -26.70 -0.24 -1.26 16 22 C 0.52 5.53 7.18 -10.99 -0.08 5.45 16 23 O -0.53 -7.49 15.20 5.55 0.08 -7.40 16 24 N -0.70 -6.00 5.46 -53.81 -0.29 -6.30 16 25 C 0.08 0.70 6.43 -67.93 -0.44 0.26 16 26 C -0.19 -1.58 10.46 -26.73 -0.28 -1.86 16 27 C -0.19 -1.26 10.45 -26.73 -0.28 -1.54 16 28 H 0.07 0.49 8.14 -51.94 -0.42 0.07 16 29 H 0.07 0.44 6.21 -51.92 -0.32 0.12 16 30 H 0.06 0.28 7.63 -51.93 -0.40 -0.11 16 31 H 0.36 3.89 5.85 -39.29 -0.23 3.66 16 32 H 0.07 0.77 7.63 -51.93 -0.40 0.38 16 33 H 0.08 0.91 7.91 -51.93 -0.41 0.50 16 34 H 0.40 4.77 6.66 -40.82 -0.27 4.50 16 35 H 0.10 1.86 8.14 -51.91 -0.42 1.43 16 36 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 37 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 0.73 8.06 -51.93 -0.42 0.31 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.67 7.37 -51.93 -0.38 0.28 16 42 H 0.40 2.46 8.28 -40.82 -0.34 2.12 16 43 H 0.14 1.46 7.40 -51.93 -0.38 1.07 16 44 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 400.12 15.07 6.03 6.03 Total: -1.00 -35.04 400.12 -9.54 -44.58 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -7.26 Total: 9.14 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -1.38 Total: -4.18 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -0.40 Total: -48.76 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.17 Total: -18.38 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.72 Total: 17.14 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.04 -9.54 -44.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483716978.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.485 kcal (2) G-P(sol) polarization free energy of solvation -35.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds