Wall clock time and date at job start Wed Apr 1 2020 00:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47399 * 2 1 4 4 N 1.46901 * 109.46692 * 119.99733 * 2 1 3 5 5 C 1.46900 * 111.00154 * 274.18263 * 4 2 1 6 6 C 1.53005 * 115.54733 * 300.68621 * 5 4 2 7 7 N 1.46492 * 109.47552 * 324.51567 * 6 5 4 8 8 C 1.34772 * 120.00308 * 183.14984 * 7 6 5 9 9 O 1.21289 * 120.00025 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00321 * 179.97438 * 8 7 6 11 11 S 1.81000 * 109.47301 * 180.02562 * 10 8 7 12 12 C 1.76203 * 100.00276 * 180.02562 * 11 10 8 13 13 H 1.07998 * 119.99410 * 0.02562 * 12 11 10 14 14 C 1.38794 * 120.00250 * 179.97438 * 12 11 10 15 15 N 1.31625 * 120.00305 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99863 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47317 * 89.99853 * 16 14 12 18 18 H 1.48504 * 109.46958 * 209.99660 * 16 14 12 19 19 H 1.48497 * 109.47325 * 329.99759 * 16 14 12 20 20 C 1.52998 * 117.49753 * 155.02023 * 5 4 2 21 21 C 1.52998 * 117.49973 * 86.36219 * 5 4 2 22 22 C 1.50700 * 109.47201 * 239.99792 * 2 1 3 23 23 O 1.21287 * 119.99748 * 240.00298 * 22 2 1 24 24 N 1.34769 * 120.00010 * 59.72321 * 22 2 1 25 25 C 1.46500 * 120.00104 * 180.27496 * 24 22 2 26 26 C 1.53001 * 117.50228 * 223.62282 * 25 24 22 27 27 C 1.52994 * 60.00039 * 252.51293 * 26 25 24 28 28 H 1.08989 * 109.47460 * 177.39708 * 1 2 3 29 29 H 1.09009 * 109.47086 * 297.39851 * 1 2 3 30 30 H 1.09001 * 109.46777 * 57.39111 * 1 2 3 31 31 H 1.00901 * 110.99600 * 150.23259 * 4 2 1 32 32 H 1.09004 * 109.46809 * 84.52154 * 6 5 4 33 33 H 1.09002 * 109.47088 * 204.51516 * 6 5 4 34 34 H 0.97006 * 119.99845 * 3.16132 * 7 6 5 35 35 H 1.09001 * 109.47148 * 300.00329 * 10 8 7 36 36 H 1.09002 * 109.47032 * 60.00916 * 10 8 7 37 37 H 0.96994 * 120.00207 * 180.02562 * 15 14 12 38 38 H 1.08995 * 117.49965 * 0.02562 * 20 5 4 39 39 H 1.09002 * 117.49896 * 145.01897 * 20 5 4 40 40 H 1.09006 * 117.49444 * 214.98482 * 21 5 4 41 41 H 1.08996 * 117.49371 * 359.97438 * 21 5 4 42 42 H 0.97000 * 120.00079 * 0.28432 * 24 22 2 43 43 H 1.09000 * 115.54999 * 9.33555 * 25 24 22 44 44 H 1.09001 * 117.49656 * 0.02562 * 26 25 24 45 45 H 1.08996 * 117.49838 * 145.02018 * 26 25 24 46 46 H 1.09003 * 117.49947 * 252.50517 * 27 26 25 47 47 H 1.09004 * 117.52108 * 107.48534 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.1007 0.2272 2.3421 6 6 3.0169 1.4377 2.1511 7 7 4.1786 1.0489 1.3478 8 6 5.1582 1.9417 1.1033 9 8 5.0782 3.0670 1.5489 10 6 6.3536 1.5416 0.2775 11 16 7.4832 2.9482 0.1301 12 6 8.7508 2.2208 -0.8542 13 1 8.6650 1.1919 -1.1709 14 6 9.8590 2.9704 -1.2233 15 7 10.8062 2.4270 -1.9581 16 14 10.0071 4.7503 -0.6759 17 1 10.7117 4.8097 0.6299 18 1 10.7761 5.5173 -1.6887 19 1 8.6512 5.3390 -0.5339 20 6 2.0139 -0.3787 3.7443 21 6 0.8373 0.4231 3.1824 22 6 2.0323 -0.7104 -1.2304 23 8 2.7296 -1.6966 -1.1190 24 7 1.7022 -0.2533 -2.4545 25 6 2.1856 -0.9475 -3.6506 26 6 2.7183 -0.0885 -4.7992 27 6 1.3680 -0.7949 -4.9348 28 1 -0.3634 -1.0265 -0.0467 29 1 -0.3634 0.4729 0.9125 30 1 -0.3633 0.5538 -0.8657 31 1 2.9110 -1.1317 1.0249 32 1 2.4702 2.2300 1.6397 33 1 3.3519 1.7970 3.1241 34 1 4.2428 0.1489 0.9916 35 1 6.8684 0.7118 0.7616 36 1 6.0233 1.2350 -0.7150 37 1 11.5809 2.9507 -2.2157 38 1 1.8970 -1.4598 3.8189 39 1 2.6091 0.0852 4.5308 40 1 0.6589 1.4143 3.5995 41 1 -0.0542 -0.1302 2.8872 42 1 1.1446 0.5354 -2.5435 43 1 2.6698 -1.9078 -3.4734 44 1 2.7095 0.9932 -4.6647 45 1 3.5533 -0.4835 -5.3777 46 1 1.3146 -1.6547 -5.6027 47 1 0.4702 -0.1783 -4.8897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483716978.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:23 Heat of formation + Delta-G solvation = -41.579021 kcal Electronic energy + Delta-G solvation = -27710.023361 eV Core-core repulsion = 23826.751967 eV Total energy + Delta-G solvation = -3883.271395 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.48998 -40.74193 -39.34887 -38.06246 -35.32842 -35.27182 -34.70751 -33.76679 -31.45198 -30.18207 -27.98548 -27.35483 -25.57249 -23.36639 -23.30142 -22.69757 -21.93171 -21.53071 -20.57110 -19.88799 -18.68522 -18.00892 -17.77175 -17.59719 -17.12698 -16.92667 -16.59525 -16.20145 -15.91889 -15.61159 -15.41700 -15.32958 -14.94987 -14.77164 -14.56244 -14.53545 -13.80642 -13.70493 -13.58870 -13.38483 -13.14726 -13.11773 -13.03315 -12.72016 -12.67375 -12.52898 -12.38292 -12.22239 -11.90151 -11.59678 -11.51418 -11.20308 -11.17490 -10.96139 -10.81258 -10.61240 -10.22237 -9.85990 -9.69706 -9.04652 -8.54457 -6.26695 0.92167 1.29684 1.42154 1.42729 1.42853 1.51418 1.88446 2.07917 2.22526 2.63839 2.80128 2.83595 2.87486 2.94735 3.52168 3.54093 3.70924 3.77938 3.94755 4.00266 4.02061 4.04144 4.09026 4.10520 4.24405 4.35787 4.47058 4.59740 4.62487 4.73765 4.74582 4.83001 4.85756 4.93052 4.99753 5.09850 5.16870 5.21340 5.27889 5.36574 5.42596 5.67242 5.81936 6.07776 6.08377 6.23396 6.40852 6.89788 7.00670 7.09121 8.58390 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008890 B = 0.003393 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3148.924969 B = 8250.545254 C =10715.945212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.069 3.931 3 H 0.079 0.921 4 N -0.631 5.631 5 C 0.005 3.995 6 C 0.132 3.868 7 N -0.716 5.716 8 C 0.540 3.460 9 O -0.552 6.552 10 C -0.115 4.115 11 S -0.161 6.161 12 C -0.535 4.535 13 H 0.057 0.943 14 C 0.047 3.953 15 N -0.917 5.917 16 Si 0.916 3.084 17 H -0.261 1.261 18 H -0.257 1.257 19 H -0.235 1.235 20 C -0.151 4.151 21 C -0.130 4.130 22 C 0.511 3.489 23 O -0.571 6.571 24 N -0.687 5.687 25 C 0.054 3.946 26 C -0.199 4.199 27 C -0.161 4.161 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.346 0.654 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.403 0.597 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.278 0.722 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.415 0.585 43 H 0.117 0.883 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.114 0.886 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.548 -5.828 2.861 29.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.043 4.043 3 H 0.096 0.904 4 N -0.265 5.265 5 C -0.088 4.088 6 C 0.006 3.994 7 N -0.370 5.370 8 C 0.325 3.675 9 O -0.430 6.430 10 C -0.266 4.266 11 S 0.066 5.934 12 C -0.682 4.682 13 H 0.075 0.925 14 C -0.159 4.159 15 N -0.555 5.555 16 Si 0.738 3.262 17 H -0.186 1.186 18 H -0.181 1.181 19 H -0.159 1.159 20 C -0.188 4.188 21 C -0.168 4.168 22 C 0.298 3.702 23 O -0.450 6.450 24 N -0.337 5.337 25 C -0.052 4.052 26 C -0.237 4.237 27 C -0.199 4.199 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.169 0.831 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.239 0.761 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.087 0.913 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.253 0.747 43 H 0.134 0.866 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.132 0.868 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -28.649 -4.931 3.748 29.311 hybrid contribution 1.726 -0.569 -1.284 2.225 sum -26.923 -5.500 2.464 27.590 Atomic orbital electron populations 1.21795 0.89875 1.03100 1.04137 1.21555 0.99262 0.96650 0.86869 0.90365 1.60417 1.34314 1.28990 1.02808 1.21629 1.02139 0.94392 0.90616 1.21420 0.85058 0.96846 0.96035 1.45819 1.21217 1.15175 1.54798 1.19829 0.83177 0.84810 0.79679 1.90692 1.78830 1.21366 1.52084 1.23261 0.97035 1.02827 1.03433 1.84552 1.21198 1.18487 1.69166 1.22463 1.07247 1.01062 1.37462 0.92461 1.25586 0.93859 1.02862 0.93545 1.70018 1.09949 1.39180 1.36314 0.85849 0.81255 0.79713 0.79432 1.18562 1.18093 1.15883 1.23240 1.01794 1.01013 0.92792 1.23230 0.91819 1.02407 0.99330 1.21101 0.79214 0.84228 0.85662 1.90699 1.39475 1.27859 1.86929 1.45230 1.52727 1.31608 1.04183 1.21614 1.04264 0.98141 0.81180 1.23477 0.98794 0.99759 1.01683 1.23453 0.95240 1.03708 0.97481 0.92196 0.89760 0.90202 0.83086 0.91102 0.90674 0.76080 0.87431 0.87832 0.91261 0.87826 0.87843 0.87008 0.86776 0.74743 0.86551 0.88191 0.88180 0.86797 0.86627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 9.27 71.98 0.67 -0.70 16 2 C 0.07 1.10 2.76 44.17 0.12 1.22 16 3 H 0.08 1.29 6.34 -2.39 -0.02 1.27 16 4 N -0.63 -10.98 6.02 -452.09 -2.72 -13.70 16 5 C 0.00 0.07 2.10 3.53 0.01 0.08 16 6 C 0.13 2.67 4.86 86.38 0.42 3.09 16 7 N -0.72 -18.16 5.14 -463.06 -2.38 -20.53 16 8 C 0.54 19.02 7.85 87.66 0.69 19.71 16 9 O -0.55 -23.21 15.86 -3.06 -0.05 -23.26 16 10 C -0.11 -4.58 6.16 71.24 0.44 -4.14 16 11 S -0.16 -8.22 18.55 -56.49 -1.05 -9.27 16 12 C -0.53 -31.83 10.04 67.95 0.68 -31.14 16 13 H 0.06 3.64 8.03 -2.91 -0.02 3.62 16 14 C 0.05 2.79 5.50 84.86 0.47 3.26 16 15 N -0.92 -56.49 13.97 21.65 0.30 -56.19 16 16 Si 0.92 45.07 27.74 68.60 1.90 46.97 16 17 H -0.26 -12.51 7.11 99.48 0.71 -11.81 16 18 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 19 H -0.24 -11.46 6.74 99.48 0.67 -10.79 16 20 C -0.15 -1.96 10.11 30.62 0.31 -1.65 16 21 C -0.13 -1.36 9.11 30.62 0.28 -1.08 16 22 C 0.51 10.71 7.18 87.66 0.63 11.34 16 23 O -0.57 -16.60 15.20 -3.05 -0.05 -16.64 16 24 N -0.69 -11.23 5.46 -442.54 -2.42 -13.65 16 25 C 0.05 0.96 6.43 44.99 0.29 1.25 16 26 C -0.20 -3.19 10.46 30.59 0.32 -2.87 16 27 C -0.16 -1.87 10.45 30.59 0.32 -1.55 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.72 6.21 -2.38 -0.01 0.71 16 30 H 0.08 0.51 7.63 -2.39 -0.02 0.49 16 31 H 0.35 7.38 5.85 -89.69 -0.52 6.86 16 32 H 0.07 1.45 7.63 -2.38 -0.02 1.43 16 33 H 0.07 1.62 7.91 -2.39 -0.02 1.61 16 34 H 0.40 9.41 6.66 -92.70 -0.62 8.80 16 35 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 36 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16 37 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 38 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.10 1.29 8.06 -2.39 -0.02 1.27 16 40 H 0.11 0.92 8.14 -2.38 -0.02 0.91 16 41 H 0.11 1.05 7.37 -2.39 -0.02 1.03 16 42 H 0.42 4.33 8.28 -92.71 -0.77 3.56 16 43 H 0.12 2.60 7.40 -2.39 -0.02 2.59 16 44 H 0.10 1.58 8.14 -2.39 -0.02 1.57 16 45 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -76.90 400.12 -1.75 -78.65 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: -0.93 Total: 30.80 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 5.64 Total: -3.18 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -7.22 Total: -104.07 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -0.09 Total: -39.90 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.90 Total: 46.97 kcal Atomic # 16 Polarization: -8.22 SS G_CDS: -1.05 Total: -9.27 kcal Total: -76.90 -1.75 -78.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483716978.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.073 kcal (2) G-P(sol) polarization free energy of solvation -76.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds