Wall clock time and date at job start Wed Apr 1 2020 00:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47188 * 2 1 4 4 N 1.46907 * 109.47100 * 239.99407 * 2 1 3 5 5 C 1.46897 * 110.99602 * 85.00034 * 4 2 1 6 6 H 1.08999 * 112.85718 * 336.19795 * 5 4 2 7 7 C 1.53788 * 113.68662 * 107.46778 * 5 4 2 8 8 C 1.53776 * 87.08150 * 139.99077 * 7 5 4 9 9 H 1.08996 * 113.68987 * 220.00427 * 8 7 5 10 10 N 1.46504 * 113.61668 * 89.11176 * 8 7 5 11 11 C 1.34775 * 119.99561 * 107.50055 * 10 8 7 12 12 O 1.21282 * 120.00577 * 0.02562 * 11 10 8 13 13 C 1.50703 * 119.99768 * 179.97438 * 11 10 8 14 14 S 1.81002 * 109.47349 * 180.02562 * 13 11 10 15 15 C 1.76199 * 100.00182 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99976 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99949 * 179.97438 * 15 14 13 18 18 N 1.31630 * 119.99849 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00065 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46755 * 90.00066 * 19 17 15 21 21 H 1.48495 * 109.46931 * 210.00080 * 19 17 15 22 22 H 1.48500 * 109.46738 * 330.00322 * 19 17 15 23 23 C 1.53780 * 87.08316 * 334.56699 * 8 7 5 24 24 C 1.50706 * 109.46663 * 119.99917 * 2 1 3 25 25 O 1.21281 * 120.00198 * 120.00354 * 24 2 1 26 26 N 1.34772 * 119.99647 * 299.99532 * 24 2 1 27 27 C 1.46500 * 119.99851 * 180.02562 * 26 24 2 28 28 C 1.52995 * 117.50288 * 223.74786 * 27 26 24 29 29 C 1.53002 * 117.50194 * 155.08384 * 27 26 24 30 30 H 1.08996 * 109.47188 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47040 * 300.00576 * 1 2 3 32 32 H 1.09001 * 109.46836 * 60.00159 * 1 2 3 33 33 H 1.00896 * 110.99574 * 208.95725 * 4 2 1 34 34 H 1.08998 * 113.61605 * 25.43802 * 7 5 4 35 35 H 1.09007 * 113.61003 * 254.53440 * 7 5 4 36 36 H 0.96993 * 120.00065 * 287.50313 * 10 8 7 37 37 H 1.09005 * 109.46867 * 60.00428 * 13 11 10 38 38 H 1.09000 * 109.47235 * 300.00468 * 13 11 10 39 39 H 0.97005 * 119.99878 * 179.97438 * 18 17 15 40 40 H 1.09005 * 113.61930 * 139.98149 * 23 8 7 41 41 H 1.09005 * 113.61146 * 270.89147 * 23 8 7 42 42 H 0.96999 * 120.00813 * 0.02562 * 26 24 2 43 43 H 1.09004 * 115.54853 * 9.42043 * 27 26 24 44 44 H 1.09005 * 117.49750 * 359.97438 * 28 27 26 45 45 H 1.08998 * 117.50166 * 145.01946 * 28 27 26 46 46 H 1.09000 * 117.50145 * 214.98007 * 29 27 26 47 47 H 1.09003 * 117.49479 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2224 -2.3469 6 1 1.4068 1.0720 -2.2483 7 6 3.5146 0.6171 -2.7447 8 6 3.0585 0.4923 -4.2079 9 1 3.8003 0.0315 -4.8601 10 7 2.5088 1.7334 -4.7592 11 6 3.2165 2.4412 -5.6619 12 8 4.3080 2.0506 -6.0181 13 6 2.6509 3.7175 -6.2295 14 16 3.8284 4.4286 -7.4059 15 6 2.9379 5.8670 -7.8986 16 1 1.9639 6.0695 -7.4781 17 6 3.4886 6.7403 -8.8263 18 7 4.6758 6.4936 -9.3384 19 14 2.5442 8.2648 -9.3493 20 1 2.8912 9.3946 -8.4501 21 1 2.9048 8.6154 -10.7465 22 1 1.0860 7.9963 -9.2668 23 6 1.9846 -0.4879 -3.7073 24 6 2.0323 -0.7104 1.2306 25 8 2.7296 -1.6965 1.1194 26 7 1.7067 -0.2498 2.4546 27 6 2.1953 -0.9401 3.6508 28 6 1.2027 -1.1615 4.7938 29 6 2.3173 -0.1223 4.9381 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.9173 -1.1206 -1.0286 34 1 4.2660 -0.1183 -2.4573 35 1 3.7834 1.6334 -2.4563 36 1 1.6358 2.0456 -4.4747 37 1 2.4714 4.4264 -5.4211 38 1 1.7120 3.5034 -6.7401 39 1 5.0606 7.1038 -9.9871 40 1 1.0182 -0.3639 -4.1961 41 1 2.3178 -1.5255 -3.6830 42 1 1.1488 0.5386 2.5436 43 1 2.9410 -1.7154 3.4746 44 1 0.1861 -0.7931 4.6559 45 1 1.2955 -2.0822 5.3698 46 1 3.1430 -0.3598 5.6090 47 1 2.0344 0.9295 4.8948 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490871638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:50 Heat of formation + Delta-G solvation = -25.028565 kcal Electronic energy + Delta-G solvation = -26154.271723 eV Core-core repulsion = 22271.718010 eV Total energy + Delta-G solvation = -3882.553713 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.69681 -39.98851 -38.31146 -37.58766 -35.34331 -33.53103 -32.69043 -32.43631 -29.89891 -28.73757 -25.89026 -25.53247 -25.26336 -23.45084 -22.97663 -21.94980 -20.94144 -20.66672 -19.62328 -17.86365 -17.71027 -17.28833 -16.53115 -16.14906 -15.93957 -15.48996 -15.41284 -14.96319 -14.82571 -14.80230 -14.24551 -14.17373 -13.81935 -13.33391 -13.27448 -13.04486 -12.84625 -12.80344 -12.59294 -12.47975 -12.18104 -12.13066 -11.93961 -11.83048 -11.77433 -11.10624 -11.07591 -11.03697 -10.90713 -10.77549 -10.60137 -10.17393 -9.82404 -9.42114 -9.32738 -9.08167 -8.95209 -8.70395 -8.24695 -6.51141 -6.22679 -3.93362 2.06722 2.45321 3.00401 3.05377 3.21299 3.26861 3.30792 3.33546 3.68169 3.73309 4.10503 4.18844 4.19316 4.33243 4.35657 4.40383 4.42009 4.59808 4.71139 4.76955 4.82611 5.04535 5.09156 5.12515 5.12760 5.20460 5.31542 5.36266 5.45951 5.48288 5.54587 5.58923 5.66588 5.73972 5.81380 5.82106 5.87369 5.92533 6.01716 6.11907 6.54326 6.73868 6.89702 7.05517 7.58354 7.68021 7.69801 8.34007 8.60281 9.22577 10.84725 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020261 B = 0.001633 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.616961 B =17145.160254 C =17772.678241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.066 3.934 3 H 0.073 0.927 4 N -0.661 5.661 5 C 0.065 3.935 6 H 0.097 0.903 7 C -0.182 4.182 8 C 0.125 3.875 9 H 0.105 0.895 10 N -0.721 5.721 11 C 0.534 3.466 12 O -0.515 6.515 13 C -0.153 4.153 14 S -0.060 6.060 15 C -0.536 4.536 16 H 0.073 0.927 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C -0.131 4.131 24 C 0.519 3.481 25 O -0.528 6.528 26 N -0.702 5.702 27 C 0.078 3.922 28 C -0.193 4.193 29 C -0.189 4.189 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.359 0.641 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.397 0.603 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.268 0.732 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.402 0.598 43 H 0.138 0.862 44 H 0.097 0.903 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.967 -14.043 27.399 32.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.047 4.047 3 H 0.091 0.909 4 N -0.295 5.295 5 C -0.045 4.045 6 H 0.115 0.885 7 C -0.223 4.223 8 C 0.018 3.982 9 H 0.123 0.877 10 N -0.375 5.375 11 C 0.320 3.680 12 O -0.389 6.389 13 C -0.304 4.304 14 S 0.167 5.833 15 C -0.685 4.685 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 C -0.170 4.170 24 C 0.305 3.695 25 O -0.403 6.403 26 N -0.353 5.353 27 C -0.028 4.028 28 C -0.231 4.231 29 C -0.228 4.228 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.182 0.818 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.231 0.769 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.117 0.883 42 H 0.237 0.763 43 H 0.156 0.844 44 H 0.116 0.884 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.083 -15.622 26.400 31.992 hybrid contribution -1.828 2.617 0.663 3.260 sum -10.911 -13.006 27.063 31.947 Atomic orbital electron populations 1.21776 0.92053 1.03413 1.02246 1.21506 0.97708 0.96826 0.88661 0.90910 1.60445 1.35410 1.31328 1.02318 1.23218 0.96422 0.94555 0.90329 0.88470 1.24185 0.97497 1.02773 0.97810 1.21604 0.97009 0.85581 0.93997 0.87707 1.45712 1.21992 1.24640 1.45138 1.20337 0.85018 0.84828 0.77811 1.90704 1.20243 1.69306 1.58616 1.23535 1.05726 0.96717 1.04435 1.85419 1.22723 1.26728 1.48435 1.22870 1.06431 1.09375 1.29792 0.90931 1.24992 0.95144 0.98194 0.95230 1.70019 1.15341 1.36851 1.28033 0.86167 0.79718 0.81639 0.77968 1.20292 1.20727 1.19700 1.23427 0.99421 0.99614 0.94507 1.20744 0.79651 0.84572 0.84550 1.90708 1.37443 1.25800 1.86326 1.45360 1.53565 1.31586 1.04752 1.21625 1.01029 0.99661 0.80457 1.23442 0.95909 1.01379 1.02388 1.23403 1.01747 0.97689 0.99921 0.91231 0.92293 0.91134 0.81837 0.89051 0.90966 0.76884 0.89276 0.89159 0.92168 0.90625 0.88325 0.76273 0.84426 0.88423 0.87892 0.87748 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 9.30 37.16 0.35 -0.38 16 2 C 0.07 0.45 2.88 -68.86 -0.20 0.26 16 3 H 0.07 0.43 7.84 -51.93 -0.41 0.02 16 4 N -0.66 -5.56 6.31 -100.09 -0.63 -6.20 16 5 C 0.06 0.52 3.75 -66.90 -0.25 0.27 16 6 H 0.10 0.70 7.49 -51.93 -0.39 0.31 16 7 C -0.18 -1.80 7.50 -25.92 -0.19 -2.00 16 8 C 0.13 1.44 4.32 -67.12 -0.29 1.15 16 9 H 0.10 1.44 7.46 -51.93 -0.39 1.06 16 10 N -0.72 -9.27 5.26 -53.02 -0.28 -9.55 16 11 C 0.53 9.79 7.85 -10.98 -0.09 9.71 16 12 O -0.52 -11.65 15.46 5.56 0.09 -11.56 16 13 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 14 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 15 C -0.54 -15.21 9.50 30.94 0.29 -14.91 16 16 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 17 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 19 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 C -0.13 -1.15 7.63 -25.92 -0.20 -1.34 16 24 C 0.52 4.36 7.18 -10.98 -0.08 4.28 16 25 O -0.53 -6.45 15.21 5.56 0.08 -6.37 16 26 N -0.70 -4.04 5.46 -53.80 -0.29 -4.33 16 27 C 0.08 0.46 6.43 -67.93 -0.44 0.02 16 28 C -0.19 -0.80 10.46 -26.69 -0.28 -1.08 16 29 C -0.19 -0.75 10.46 -26.69 -0.28 -1.03 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.19 7.56 -51.93 -0.39 -0.20 16 32 H 0.07 0.37 7.74 -51.93 -0.40 -0.04 16 33 H 0.36 3.49 6.92 -39.29 -0.27 3.21 16 34 H 0.09 0.87 7.83 -51.93 -0.41 0.47 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.40 3.90 8.70 -40.82 -0.36 3.54 16 37 H 0.09 1.62 8.14 -51.91 -0.42 1.19 16 38 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.40 1.28 8.24 -40.82 -0.34 0.95 16 43 H 0.14 1.03 7.40 -51.93 -0.38 0.65 16 44 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 LS Contribution 405.99 15.07 6.12 6.12 Total: -1.00 -36.02 405.99 -10.45 -46.47 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.50 Total: 4.22 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -1.53 Total: -5.88 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -0.47 Total: -45.44 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.17 Total: -17.93 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.02 -10.45 -46.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490871638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.443 kcal (2) G-P(sol) polarization free energy of solvation -36.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds