Wall clock time and date at job start Wed Apr 1 2020 00:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47188 * 2 1 4 4 N 1.46907 * 109.47100 * 239.99407 * 2 1 3 5 5 C 1.46897 * 110.99602 * 85.00034 * 4 2 1 6 6 H 1.08999 * 112.85718 * 336.19795 * 5 4 2 7 7 C 1.53788 * 113.68662 * 107.46778 * 5 4 2 8 8 C 1.53776 * 87.08150 * 139.99077 * 7 5 4 9 9 H 1.08996 * 113.68987 * 220.00427 * 8 7 5 10 10 N 1.46504 * 113.61668 * 89.11176 * 8 7 5 11 11 C 1.34775 * 119.99561 * 107.50055 * 10 8 7 12 12 O 1.21282 * 120.00577 * 0.02562 * 11 10 8 13 13 C 1.50703 * 119.99768 * 179.97438 * 11 10 8 14 14 S 1.81002 * 109.47349 * 180.02562 * 13 11 10 15 15 C 1.76199 * 100.00182 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99976 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99949 * 179.97438 * 15 14 13 18 18 N 1.31630 * 119.99849 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00065 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46755 * 90.00066 * 19 17 15 21 21 H 1.48495 * 109.46931 * 210.00080 * 19 17 15 22 22 H 1.48500 * 109.46738 * 330.00322 * 19 17 15 23 23 C 1.53780 * 87.08316 * 334.56699 * 8 7 5 24 24 C 1.50706 * 109.46663 * 119.99917 * 2 1 3 25 25 O 1.21281 * 120.00198 * 120.00354 * 24 2 1 26 26 N 1.34772 * 119.99647 * 299.99532 * 24 2 1 27 27 C 1.46500 * 119.99851 * 180.02562 * 26 24 2 28 28 C 1.52995 * 117.50288 * 223.74786 * 27 26 24 29 29 C 1.53002 * 117.50194 * 155.08384 * 27 26 24 30 30 H 1.08996 * 109.47188 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47040 * 300.00576 * 1 2 3 32 32 H 1.09001 * 109.46836 * 60.00159 * 1 2 3 33 33 H 1.00896 * 110.99574 * 208.95725 * 4 2 1 34 34 H 1.08998 * 113.61605 * 25.43802 * 7 5 4 35 35 H 1.09007 * 113.61003 * 254.53440 * 7 5 4 36 36 H 0.96993 * 120.00065 * 287.50313 * 10 8 7 37 37 H 1.09005 * 109.46867 * 60.00428 * 13 11 10 38 38 H 1.09000 * 109.47235 * 300.00468 * 13 11 10 39 39 H 0.97005 * 119.99878 * 179.97438 * 18 17 15 40 40 H 1.09005 * 113.61930 * 139.98149 * 23 8 7 41 41 H 1.09005 * 113.61146 * 270.89147 * 23 8 7 42 42 H 0.96999 * 120.00813 * 0.02562 * 26 24 2 43 43 H 1.09004 * 115.54853 * 9.42043 * 27 26 24 44 44 H 1.09005 * 117.49750 * 359.97438 * 28 27 26 45 45 H 1.08998 * 117.50166 * 145.01946 * 28 27 26 46 46 H 1.09000 * 117.50145 * 214.98007 * 29 27 26 47 47 H 1.09003 * 117.49479 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2224 -2.3469 6 1 1.4068 1.0720 -2.2483 7 6 3.5146 0.6171 -2.7447 8 6 3.0585 0.4923 -4.2079 9 1 3.8003 0.0315 -4.8601 10 7 2.5088 1.7334 -4.7592 11 6 3.2165 2.4412 -5.6619 12 8 4.3080 2.0506 -6.0181 13 6 2.6509 3.7175 -6.2295 14 16 3.8284 4.4286 -7.4059 15 6 2.9379 5.8670 -7.8986 16 1 1.9639 6.0695 -7.4781 17 6 3.4886 6.7403 -8.8263 18 7 4.6758 6.4936 -9.3384 19 14 2.5442 8.2648 -9.3493 20 1 2.8912 9.3946 -8.4501 21 1 2.9048 8.6154 -10.7465 22 1 1.0860 7.9963 -9.2668 23 6 1.9846 -0.4879 -3.7073 24 6 2.0323 -0.7104 1.2306 25 8 2.7296 -1.6965 1.1194 26 7 1.7067 -0.2498 2.4546 27 6 2.1953 -0.9401 3.6508 28 6 1.2027 -1.1615 4.7938 29 6 2.3173 -0.1223 4.9381 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.9173 -1.1206 -1.0286 34 1 4.2660 -0.1183 -2.4573 35 1 3.7834 1.6334 -2.4563 36 1 1.6358 2.0456 -4.4747 37 1 2.4714 4.4264 -5.4211 38 1 1.7120 3.5034 -6.7401 39 1 5.0606 7.1038 -9.9871 40 1 1.0182 -0.3639 -4.1961 41 1 2.3178 -1.5255 -3.6830 42 1 1.1488 0.5386 2.5436 43 1 2.9410 -1.7154 3.4746 44 1 0.1861 -0.7931 4.6559 45 1 1.2955 -2.0822 5.3698 46 1 3.1430 -0.3598 5.6090 47 1 2.0344 0.9295 4.8948 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490871638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:49 Heat of formation + Delta-G solvation = -52.864077 kcal Electronic energy + Delta-G solvation = -26155.478762 eV Core-core repulsion = 22271.718010 eV Total energy + Delta-G solvation = -3883.760752 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.45252 -40.91732 -39.44016 -38.11918 -36.11160 -34.58178 -34.33724 -33.60088 -30.92813 -29.80974 -27.66438 -26.67101 -25.88278 -24.21962 -23.28684 -22.44391 -22.17445 -21.28952 -20.55762 -19.82873 -18.35714 -17.95888 -17.75693 -17.10764 -16.87090 -16.73615 -16.42797 -16.17879 -16.09183 -15.82407 -15.30002 -14.96668 -14.77065 -14.62603 -14.44966 -14.00279 -13.71603 -13.64538 -13.37722 -13.27225 -13.15854 -13.03639 -12.88416 -12.71225 -12.59872 -12.50961 -12.46221 -12.35996 -11.74191 -11.72438 -11.49148 -11.38744 -11.13589 -10.96082 -10.83277 -10.26414 -10.08165 -9.80392 -9.39508 -8.66258 -8.33956 -6.12201 1.27383 1.43253 1.46824 1.47806 1.58041 1.60006 1.96539 2.24625 2.29227 2.96491 3.00353 3.09736 3.32690 3.54292 3.59702 3.66813 3.80121 3.88656 3.98566 4.02693 4.04770 4.05505 4.15564 4.27557 4.32276 4.51628 4.53844 4.75637 4.77188 4.77733 4.82088 4.86521 4.92447 4.95555 5.01477 5.05048 5.14034 5.19318 5.32849 5.42597 5.46001 5.57349 6.01618 6.20491 6.27053 6.47723 6.52807 7.07367 7.14510 7.26606 8.75252 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020261 B = 0.001633 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.616961 B =17145.160254 C =17772.678241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.068 3.932 3 H 0.089 0.911 4 N -0.667 5.667 5 C 0.081 3.919 6 H 0.117 0.883 7 C -0.179 4.179 8 C 0.112 3.888 9 H 0.077 0.923 10 N -0.693 5.693 11 C 0.535 3.465 12 O -0.567 6.567 13 C -0.128 4.128 14 S -0.155 6.155 15 C -0.546 4.546 16 H 0.084 0.916 17 C 0.013 3.987 18 N -0.912 5.912 19 Si 0.999 3.001 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.257 1.257 23 C -0.117 4.117 24 C 0.514 3.486 25 O -0.575 6.575 26 N -0.687 5.687 27 C 0.051 3.949 28 C -0.183 4.183 29 C -0.175 4.175 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.350 0.650 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.417 0.583 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.271 0.729 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.417 0.583 43 H 0.114 0.886 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.295 -12.793 29.374 35.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.045 4.045 3 H 0.107 0.893 4 N -0.301 5.301 5 C -0.029 4.029 6 H 0.135 0.865 7 C -0.219 4.219 8 C 0.005 3.995 9 H 0.095 0.905 10 N -0.346 5.346 11 C 0.322 3.678 12 O -0.445 6.445 13 C -0.280 4.280 14 S 0.073 5.927 15 C -0.694 4.694 16 H 0.102 0.898 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.181 1.181 23 C -0.156 4.156 24 C 0.301 3.699 25 O -0.454 6.454 26 N -0.338 5.338 27 C -0.055 4.055 28 C -0.221 4.221 29 C -0.213 4.213 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.172 0.828 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.255 0.745 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.118 0.882 42 H 0.254 0.746 43 H 0.132 0.868 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.127 0.873 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.491 -14.366 28.452 34.233 hybrid contribution -0.805 2.108 0.196 2.265 sum -13.295 -12.258 28.647 33.878 Atomic orbital electron populations 1.21781 0.90509 1.02912 1.03840 1.21615 0.98704 0.96995 0.87213 0.89313 1.60467 1.34886 1.31586 1.03152 1.23150 0.95062 0.94737 0.89966 0.86482 1.24165 0.99083 1.02358 0.96321 1.21748 0.98043 0.85425 0.94254 0.90491 1.45385 1.22066 1.24116 1.43032 1.20117 0.84582 0.84676 0.78473 1.90696 1.22556 1.70456 1.60769 1.23368 1.03958 0.97482 1.03142 1.85631 1.27189 1.28186 1.51743 1.23217 1.06765 1.09411 1.30005 0.89750 1.26137 0.96077 1.01882 0.95072 1.70191 1.17382 1.38406 1.28866 0.84945 0.78652 0.76843 0.77485 1.19309 1.20415 1.18082 1.23347 0.98794 0.98871 0.94573 1.21089 0.79083 0.84088 0.85657 1.90689 1.39743 1.27991 1.86995 1.45241 1.52892 1.31621 1.04051 1.21619 1.02121 1.00581 0.81215 1.23500 0.96222 1.01717 1.00678 1.23472 1.01697 0.98205 0.97965 0.92751 0.89913 0.90354 0.82814 0.89134 0.91796 0.74517 0.86997 0.87012 0.92030 0.89229 0.88219 0.74557 0.86825 0.87364 0.87587 0.87300 0.87104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 9.30 71.98 0.67 -0.35 16 2 C 0.07 0.78 2.88 44.17 0.13 0.91 16 3 H 0.09 0.78 7.84 -2.39 -0.02 0.76 16 4 N -0.67 -10.22 6.31 -470.58 -2.97 -13.19 16 5 C 0.08 1.12 3.75 45.45 0.17 1.29 16 6 H 0.12 1.20 7.49 -2.39 -0.02 1.18 16 7 C -0.18 -3.37 7.50 31.12 0.23 -3.14 16 8 C 0.11 2.48 4.32 45.51 0.20 2.68 16 9 H 0.08 2.19 7.46 -2.39 -0.02 2.17 16 10 N -0.69 -16.57 5.26 -440.04 -2.32 -18.89 16 11 C 0.54 19.40 7.85 87.66 0.69 20.09 16 12 O -0.57 -26.42 15.46 -3.04 -0.05 -26.47 16 13 C -0.13 -4.94 6.16 71.24 0.44 -4.50 16 14 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 15 C -0.55 -30.91 9.50 67.96 0.65 -30.27 16 16 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 17 C 0.01 0.74 5.49 84.86 0.47 1.20 16 18 N -0.91 -55.98 13.22 21.65 0.29 -55.70 16 19 Si 1.00 43.16 29.55 68.60 2.03 45.19 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 21 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 23 C -0.12 -1.81 7.63 31.12 0.24 -1.58 16 24 C 0.51 8.23 7.18 87.66 0.63 8.86 16 25 O -0.58 -14.43 15.21 -3.03 -0.05 -14.48 16 26 N -0.69 -6.93 5.46 -442.53 -2.42 -9.35 16 27 C 0.05 0.56 6.43 44.99 0.29 0.85 16 28 C -0.18 -1.21 10.46 30.62 0.32 -0.89 16 29 C -0.18 -1.07 10.46 30.62 0.32 -0.75 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 0.24 7.56 -2.39 -0.02 0.22 16 32 H 0.08 0.51 7.74 -2.39 -0.02 0.49 16 33 H 0.35 6.67 6.92 -89.70 -0.62 6.05 16 34 H 0.09 1.73 7.83 -2.39 -0.02 1.72 16 35 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.42 6.76 8.70 -92.71 -0.81 5.95 16 37 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 38 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 39 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 40 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.42 1.58 8.24 -92.71 -0.76 0.82 16 43 H 0.11 1.82 7.40 -2.38 -0.02 1.81 16 44 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 45 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -82.45 405.99 -2.39 -84.84 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -1.19 Total: 23.35 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 5.43 Total: -5.60 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: -7.41 Total: -97.12 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -0.09 Total: -40.95 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -82.45 -2.39 -84.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490871638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.979 kcal (2) G-P(sol) polarization free energy of solvation -82.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds