Wall clock time and date at job start Wed Apr 1 2020 00:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47214 * 2 1 4 4 N 1.46889 * 109.47629 * 120.00531 * 2 1 3 5 5 C 1.46905 * 111.00124 * 275.00302 * 4 2 1 6 6 H 1.08998 * 112.84773 * 23.79542 * 5 4 2 7 7 C 1.53775 * 113.61895 * 154.99704 * 5 4 2 8 8 C 1.53780 * 87.08198 * 139.97966 * 7 5 4 9 9 H 1.09004 * 113.61342 * 219.94001 * 8 7 5 10 10 N 1.46497 * 113.61603 * 89.11705 * 8 7 5 11 11 C 1.34777 * 120.00130 * 154.99762 * 10 8 7 12 12 O 1.21282 * 120.00096 * 0.02562 * 11 10 8 13 13 C 1.50700 * 119.99986 * 180.02562 * 11 10 8 14 14 S 1.81001 * 109.46893 * 180.02562 * 13 11 10 15 15 C 1.76205 * 99.99802 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99912 * 0.02562 * 15 14 13 17 17 C 1.38797 * 119.99906 * 179.97438 * 15 14 13 18 18 N 1.31629 * 120.00334 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00006 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46874 * 90.00180 * 19 17 15 21 21 H 1.48504 * 109.47532 * 210.00316 * 19 17 15 22 22 H 1.48502 * 109.47079 * 330.00801 * 19 17 15 23 23 C 1.53780 * 113.61061 * 252.49559 * 5 4 2 24 24 C 1.50706 * 109.46763 * 240.00605 * 2 1 3 25 25 O 1.21281 * 119.99699 * 239.99570 * 24 2 1 26 26 N 1.34773 * 120.00080 * 60.00061 * 24 2 1 27 27 C 1.46506 * 119.99969 * 180.02562 * 26 24 2 28 28 C 1.52997 * 117.49646 * 223.46918 * 27 26 24 29 29 C 1.52997 * 117.49925 * 154.80819 * 27 26 24 30 30 H 1.09002 * 109.46848 * 299.99518 * 1 2 3 31 31 H 1.09000 * 109.47019 * 59.99173 * 1 2 3 32 32 H 1.08995 * 109.46910 * 180.02562 * 1 2 3 33 33 H 1.00907 * 111.00260 * 38.95084 * 4 2 1 34 34 H 1.09000 * 113.61680 * 254.52658 * 7 5 4 35 35 H 1.09004 * 113.61368 * 25.43351 * 7 5 4 36 36 H 0.96997 * 119.99694 * 334.99999 * 10 8 7 37 37 H 1.09003 * 109.46792 * 299.99853 * 13 11 10 38 38 H 1.08994 * 109.47026 * 59.99994 * 13 11 10 39 39 H 0.96999 * 120.00243 * 179.97438 * 18 17 15 40 40 H 1.08994 * 113.61661 * 334.56398 * 23 5 4 41 41 H 1.09005 * 113.61339 * 105.46751 * 23 5 4 42 42 H 0.97005 * 120.00161 * 359.72088 * 26 24 2 43 43 H 1.09001 * 115.54823 * 9.13763 * 27 26 24 44 44 H 1.08998 * 117.50238 * 359.97438 * 28 27 26 45 45 H 1.09007 * 117.49457 * 145.01801 * 28 27 26 46 46 H 1.08999 * 117.49561 * 214.97429 * 29 27 26 47 47 H 1.08996 * 117.49925 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6925 1.1992 5 6 2.0826 0.2224 2.3468 6 1 1.4069 1.0720 2.2482 7 6 1.9847 -0.4879 3.7072 8 6 3.0601 0.4910 4.2072 9 1 3.8019 0.0291 4.8588 10 7 2.5125 1.7327 4.7590 11 6 3.2216 2.4395 5.6613 12 8 4.3133 2.0479 6.0161 13 6 2.6580 3.7165 6.2294 14 16 3.8379 4.4267 7.4040 15 6 2.9495 5.8660 7.8976 16 1 1.9748 6.0690 7.4791 17 6 3.5019 6.7384 8.8252 18 7 4.6896 6.4908 9.3357 19 14 2.5597 8.2639 9.3491 20 1 1.7127 7.9428 10.5259 21 1 3.5189 9.3392 9.7082 22 1 1.6983 8.7225 8.2297 23 6 3.5154 0.6154 2.7436 24 6 2.0323 -0.7103 -1.2306 25 8 2.7296 -1.6964 -1.1194 26 7 1.7067 -0.2497 -2.4546 27 6 2.1945 -0.9406 -3.6509 28 6 2.7282 -0.0782 -4.7964 29 6 1.3793 -0.7881 -4.9366 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.4497 -1.4980 1.4099 34 1 1.0189 -0.3627 4.1967 35 1 2.3166 -1.5259 3.6827 36 1 1.6396 2.0461 4.4750 37 1 2.4789 4.4257 5.4212 38 1 1.7193 3.5035 6.7406 39 1 5.0757 7.1007 9.9836 40 1 4.2657 -0.1209 2.4556 41 1 3.7853 1.6313 2.4551 42 1 1.1457 0.5366 -2.5436 43 1 2.6810 -1.8999 -3.4742 44 1 2.7159 1.0032 -4.6603 45 1 3.5656 -0.4703 -5.3737 46 1 1.3298 -1.6469 -5.6060 47 1 0.4798 -0.1741 -4.8923 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490871642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:53 Heat of formation + Delta-G solvation = -22.886578 kcal Electronic energy + Delta-G solvation = -26147.271418 eV Core-core repulsion = 22264.810589 eV Total energy + Delta-G solvation = -3882.460830 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.54038 -39.92664 -38.29467 -37.48544 -35.52259 -33.38657 -32.68748 -32.43375 -29.80764 -28.68595 -25.95174 -25.52057 -25.22845 -23.49532 -22.92462 -21.98275 -20.93146 -20.67327 -19.47982 -17.86153 -17.60115 -17.12389 -16.64052 -16.08823 -15.87145 -15.52118 -15.09964 -14.94931 -14.81192 -14.76883 -14.39456 -14.19738 -13.92351 -13.54303 -13.19351 -13.11696 -12.94744 -12.73265 -12.60543 -12.45805 -12.16709 -12.08046 -11.87294 -11.75118 -11.64707 -11.07280 -11.04604 -11.03487 -10.81157 -10.74988 -10.66403 -10.03804 -9.82015 -9.40769 -9.20605 -9.07797 -8.92519 -8.72109 -8.24128 -6.50618 -6.22302 -3.92978 2.25014 2.52546 3.00907 3.06761 3.21445 3.27010 3.30794 3.39889 3.68724 3.78760 4.18235 4.19552 4.24784 4.26830 4.38915 4.42345 4.46127 4.49033 4.59708 4.78036 4.83530 4.99361 5.08570 5.11278 5.12625 5.13316 5.27760 5.36964 5.41414 5.48057 5.53245 5.55842 5.59202 5.71743 5.85304 5.88307 5.97720 6.03064 6.06770 6.12116 6.53963 6.76543 6.94533 7.09144 7.58537 7.70117 7.88894 8.34246 8.61375 9.22891 10.85099 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019638 B = 0.001641 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.434768 B =17060.526779 C =17676.489476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.068 3.932 3 H 0.106 0.894 4 N -0.653 5.653 5 C 0.059 3.941 6 H 0.075 0.925 7 C -0.148 4.148 8 C 0.124 3.876 9 H 0.106 0.894 10 N -0.722 5.722 11 C 0.534 3.466 12 O -0.514 6.514 13 C -0.153 4.153 14 S -0.059 6.059 15 C -0.537 4.537 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.273 1.273 23 C -0.137 4.137 24 C 0.522 3.478 25 O -0.514 6.514 26 N -0.708 5.708 27 C 0.082 3.918 28 C -0.194 4.194 29 C -0.191 4.191 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.349 0.651 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.396 0.604 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.400 0.600 43 H 0.137 0.863 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.565 -14.550 -26.630 32.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.046 4.046 3 H 0.124 0.876 4 N -0.284 5.284 5 C -0.051 4.051 6 H 0.093 0.907 7 C -0.186 4.186 8 C 0.017 3.983 9 H 0.124 0.876 10 N -0.376 5.376 11 C 0.320 3.680 12 O -0.388 6.388 13 C -0.304 4.304 14 S 0.167 5.833 15 C -0.685 4.685 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 C -0.177 4.177 24 C 0.308 3.692 25 O -0.387 6.387 26 N -0.360 5.360 27 C -0.025 4.025 28 C -0.233 4.233 29 C -0.229 4.229 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.169 0.831 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.230 0.770 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.087 0.913 42 H 0.234 0.766 43 H 0.155 0.845 44 H 0.116 0.884 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.393 -15.809 -25.929 31.788 hybrid contribution -3.601 2.217 -0.264 4.238 sum -12.994 -13.591 -26.193 32.243 Atomic orbital electron populations 1.22491 0.94878 1.03192 1.03348 1.21515 0.93945 0.98920 0.90221 0.87624 1.60248 1.57221 1.08907 1.01999 1.23192 0.98317 0.95025 0.88539 0.90744 1.23598 0.99862 1.00063 0.95117 1.21608 0.96589 0.85236 0.94823 0.87584 1.45721 1.21997 1.24653 1.45203 1.20323 0.85025 0.84836 0.77806 1.90707 1.20180 1.69245 1.58626 1.23533 1.05694 0.96737 1.04445 1.85427 1.22644 1.26673 1.48507 1.22869 1.06387 1.09395 1.29826 0.90951 1.24988 0.95120 0.98193 0.95254 1.70016 1.15216 1.36986 1.28008 0.86171 0.79279 0.81158 0.78895 1.20269 1.20736 1.19735 1.23565 0.96562 1.02406 0.95165 1.20634 0.79981 0.84716 0.83903 1.90709 1.36104 1.25611 1.86280 1.45436 1.53729 1.32018 1.04816 1.21582 1.01939 0.98464 0.80475 1.23443 0.97655 0.99605 1.02573 1.23388 0.95544 1.03793 1.00193 0.91152 0.91542 0.91632 0.83085 0.90833 0.88039 0.77017 0.89270 0.89238 0.92163 0.88332 0.91275 0.76602 0.84500 0.88448 0.87935 0.87885 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.76 9.05 37.16 0.34 -0.42 16 2 C 0.07 0.45 2.85 -68.87 -0.20 0.25 16 3 H 0.11 0.65 7.84 -51.93 -0.41 0.24 16 4 N -0.65 -5.28 5.79 -100.10 -0.58 -5.86 16 5 C 0.06 0.46 3.71 -66.90 -0.25 0.22 16 6 H 0.07 0.51 7.49 -51.93 -0.39 0.12 16 7 C -0.15 -1.19 7.40 -25.92 -0.19 -1.38 16 8 C 0.12 1.43 4.32 -67.12 -0.29 1.14 16 9 H 0.11 1.47 7.46 -51.93 -0.39 1.08 16 10 N -0.72 -9.26 5.26 -53.02 -0.28 -9.54 16 11 C 0.53 9.80 7.85 -10.98 -0.09 9.72 16 12 O -0.51 -11.65 15.46 5.56 0.09 -11.57 16 13 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 14 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 15 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 16 H 0.07 1.93 7.80 -52.48 -0.41 1.53 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 19 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 C -0.14 -1.46 7.68 -25.92 -0.20 -1.66 16 24 C 0.52 4.59 7.22 -10.98 -0.08 4.51 16 25 O -0.51 -6.77 16.00 5.56 0.09 -6.68 16 26 N -0.71 -4.30 5.46 -53.80 -0.29 -4.59 16 27 C 0.08 0.51 6.43 -67.93 -0.44 0.08 16 28 C -0.19 -0.94 10.46 -26.69 -0.28 -1.22 16 29 C -0.19 -0.79 10.46 -26.69 -0.28 -1.07 16 30 H 0.07 0.28 7.74 -51.93 -0.40 -0.12 16 31 H 0.07 0.18 7.56 -51.93 -0.39 -0.21 16 32 H 0.06 0.31 8.13 -51.93 -0.42 -0.12 16 33 H 0.35 2.60 8.29 -39.29 -0.33 2.28 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.40 3.85 8.70 -40.82 -0.36 3.50 16 37 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 38 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 39 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.40 1.37 8.24 -40.82 -0.34 1.03 16 43 H 0.14 1.09 7.40 -51.93 -0.38 0.71 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 LS Contribution 407.60 15.07 6.14 6.14 Total: -1.00 -36.74 407.60 -10.44 -47.18 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -7.57 Total: 3.40 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -1.53 Total: -5.57 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.42 Total: -45.35 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: 0.17 Total: -18.25 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.74 -10.44 -47.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490871642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.297 kcal (2) G-P(sol) polarization free energy of solvation -36.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds