Wall clock time and date at job start Wed Apr 1 2020 00:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47214 * 2 1 4 4 N 1.46889 * 109.47629 * 120.00531 * 2 1 3 5 5 C 1.46905 * 111.00124 * 275.00302 * 4 2 1 6 6 H 1.08998 * 112.84773 * 23.79542 * 5 4 2 7 7 C 1.53775 * 113.61895 * 154.99704 * 5 4 2 8 8 C 1.53780 * 87.08198 * 139.97966 * 7 5 4 9 9 H 1.09004 * 113.61342 * 219.94001 * 8 7 5 10 10 N 1.46497 * 113.61603 * 89.11705 * 8 7 5 11 11 C 1.34777 * 120.00130 * 154.99762 * 10 8 7 12 12 O 1.21282 * 120.00096 * 0.02562 * 11 10 8 13 13 C 1.50700 * 119.99986 * 180.02562 * 11 10 8 14 14 S 1.81001 * 109.46893 * 180.02562 * 13 11 10 15 15 C 1.76205 * 99.99802 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99912 * 0.02562 * 15 14 13 17 17 C 1.38797 * 119.99906 * 179.97438 * 15 14 13 18 18 N 1.31629 * 120.00334 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00006 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46874 * 90.00180 * 19 17 15 21 21 H 1.48504 * 109.47532 * 210.00316 * 19 17 15 22 22 H 1.48502 * 109.47079 * 330.00801 * 19 17 15 23 23 C 1.53780 * 113.61061 * 252.49559 * 5 4 2 24 24 C 1.50706 * 109.46763 * 240.00605 * 2 1 3 25 25 O 1.21281 * 119.99699 * 239.99570 * 24 2 1 26 26 N 1.34773 * 120.00080 * 60.00061 * 24 2 1 27 27 C 1.46506 * 119.99969 * 180.02562 * 26 24 2 28 28 C 1.52997 * 117.49646 * 223.46918 * 27 26 24 29 29 C 1.52997 * 117.49925 * 154.80819 * 27 26 24 30 30 H 1.09002 * 109.46848 * 299.99518 * 1 2 3 31 31 H 1.09000 * 109.47019 * 59.99173 * 1 2 3 32 32 H 1.08995 * 109.46910 * 180.02562 * 1 2 3 33 33 H 1.00907 * 111.00260 * 38.95084 * 4 2 1 34 34 H 1.09000 * 113.61680 * 254.52658 * 7 5 4 35 35 H 1.09004 * 113.61368 * 25.43351 * 7 5 4 36 36 H 0.96997 * 119.99694 * 334.99999 * 10 8 7 37 37 H 1.09003 * 109.46792 * 299.99853 * 13 11 10 38 38 H 1.08994 * 109.47026 * 59.99994 * 13 11 10 39 39 H 0.96999 * 120.00243 * 179.97438 * 18 17 15 40 40 H 1.08994 * 113.61661 * 334.56398 * 23 5 4 41 41 H 1.09005 * 113.61339 * 105.46751 * 23 5 4 42 42 H 0.97005 * 120.00161 * 359.72088 * 26 24 2 43 43 H 1.09001 * 115.54823 * 9.13763 * 27 26 24 44 44 H 1.08998 * 117.50238 * 359.97438 * 28 27 26 45 45 H 1.09007 * 117.49457 * 145.01801 * 28 27 26 46 46 H 1.08999 * 117.49561 * 214.97429 * 29 27 26 47 47 H 1.08996 * 117.49925 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6925 1.1992 5 6 2.0826 0.2224 2.3468 6 1 1.4069 1.0720 2.2482 7 6 1.9847 -0.4879 3.7072 8 6 3.0601 0.4910 4.2072 9 1 3.8019 0.0291 4.8588 10 7 2.5125 1.7327 4.7590 11 6 3.2216 2.4395 5.6613 12 8 4.3133 2.0479 6.0161 13 6 2.6580 3.7165 6.2294 14 16 3.8379 4.4267 7.4040 15 6 2.9495 5.8660 7.8976 16 1 1.9748 6.0690 7.4791 17 6 3.5019 6.7384 8.8252 18 7 4.6896 6.4908 9.3357 19 14 2.5597 8.2639 9.3491 20 1 1.7127 7.9428 10.5259 21 1 3.5189 9.3392 9.7082 22 1 1.6983 8.7225 8.2297 23 6 3.5154 0.6154 2.7436 24 6 2.0323 -0.7103 -1.2306 25 8 2.7296 -1.6964 -1.1194 26 7 1.7067 -0.2497 -2.4546 27 6 2.1945 -0.9406 -3.6509 28 6 2.7282 -0.0782 -4.7964 29 6 1.3793 -0.7881 -4.9366 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.4497 -1.4980 1.4099 34 1 1.0189 -0.3627 4.1967 35 1 2.3166 -1.5259 3.6827 36 1 1.6396 2.0461 4.4750 37 1 2.4789 4.4257 5.4212 38 1 1.7193 3.5035 6.7406 39 1 5.0757 7.1007 9.9836 40 1 4.2657 -0.1209 2.4556 41 1 3.7853 1.6313 2.4551 42 1 1.1457 0.5366 -2.5436 43 1 2.6810 -1.8999 -3.4742 44 1 2.7159 1.0032 -4.6603 45 1 3.5656 -0.4703 -5.3737 46 1 1.3298 -1.6469 -5.6060 47 1 0.4798 -0.1741 -4.8923 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490871642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:52 Heat of formation + Delta-G solvation = -51.514385 kcal Electronic energy + Delta-G solvation = -26148.512813 eV Core-core repulsion = 22264.810589 eV Total energy + Delta-G solvation = -3883.702225 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.35789 -40.81447 -39.41912 -38.04538 -36.27494 -34.57926 -34.27007 -33.56609 -30.87921 -29.68584 -27.66059 -26.71700 -25.79143 -24.30045 -23.27299 -22.48543 -22.16096 -21.33777 -20.41603 -19.82231 -18.27801 -17.91842 -17.62165 -17.15432 -16.86941 -16.78461 -16.36641 -16.16486 -15.85127 -15.65491 -15.41621 -15.05876 -14.83542 -14.59378 -14.49363 -13.99594 -13.86686 -13.60479 -13.35141 -13.32811 -13.15621 -13.02283 -12.87636 -12.67152 -12.56289 -12.47531 -12.40977 -12.26699 -11.73514 -11.56940 -11.50066 -11.45456 -11.13365 -10.94955 -10.73379 -10.25842 -10.05712 -9.72030 -9.34427 -8.65884 -8.33609 -6.11896 1.27656 1.43394 1.48072 1.58113 1.61145 1.62592 2.01771 2.25068 2.29569 2.99053 3.00643 3.21857 3.33114 3.52313 3.58663 3.72845 3.83380 3.94049 4.00110 4.00457 4.06708 4.07023 4.14789 4.19012 4.32892 4.51738 4.52799 4.73832 4.76299 4.77714 4.85222 4.86899 4.87527 5.00979 5.02746 5.07894 5.15090 5.20040 5.20200 5.42752 5.53747 5.59109 6.04624 6.20725 6.39142 6.53291 6.60100 7.07641 7.27788 7.31259 8.75605 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019638 B = 0.001641 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.434768 B =17060.526779 C =17676.489476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.072 3.928 3 H 0.114 0.886 4 N -0.670 5.670 5 C 0.078 3.922 6 H 0.097 0.903 7 C -0.128 4.128 8 C 0.111 3.889 9 H 0.077 0.923 10 N -0.693 5.693 11 C 0.535 3.465 12 O -0.567 6.567 13 C -0.128 4.128 14 S -0.155 6.155 15 C -0.546 4.546 16 H 0.084 0.916 17 C 0.013 3.987 18 N -0.912 5.912 19 Si 0.999 3.001 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.257 1.257 23 C -0.141 4.141 24 C 0.517 3.483 25 O -0.569 6.569 26 N -0.693 5.693 27 C 0.054 3.946 28 C -0.191 4.191 29 C -0.170 4.170 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.353 0.647 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.417 0.583 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.271 0.729 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.415 0.585 43 H 0.112 0.888 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.110 0.890 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.340 -13.440 -28.421 35.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.042 4.042 3 H 0.132 0.868 4 N -0.302 5.302 5 C -0.032 4.032 6 H 0.115 0.885 7 C -0.166 4.166 8 C 0.004 3.996 9 H 0.095 0.905 10 N -0.346 5.346 11 C 0.321 3.679 12 O -0.445 6.445 13 C -0.279 4.279 14 S 0.072 5.928 15 C -0.694 4.694 16 H 0.103 0.897 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.181 1.181 23 C -0.181 4.181 24 C 0.303 3.697 25 O -0.446 6.446 26 N -0.345 5.345 27 C -0.052 4.052 28 C -0.229 4.229 29 C -0.208 4.208 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.174 0.826 34 H 0.113 0.887 35 H 0.124 0.876 36 H 0.254 0.746 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.252 0.748 43 H 0.130 0.870 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.128 0.872 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.251 -14.693 -27.796 34.118 hybrid contribution -2.410 1.757 0.137 2.986 sum -15.660 -12.936 -27.659 34.316 Atomic orbital electron populations 1.22434 0.92501 1.03355 1.04795 1.21544 0.95657 0.98502 0.88483 0.86795 1.60089 1.58241 1.09397 1.02480 1.23035 0.96209 0.95490 0.88443 0.88533 1.23490 0.99299 0.99236 0.94617 1.21739 0.97944 0.85294 0.94578 0.90501 1.45379 1.22064 1.24126 1.43033 1.20116 0.84585 0.84688 0.78488 1.90699 1.22533 1.70410 1.60817 1.23364 1.03956 0.97460 1.03132 1.85648 1.27172 1.28155 1.51817 1.23216 1.06713 1.09416 1.30029 0.89742 1.26137 0.96047 1.01902 0.95101 1.70189 1.17275 1.38530 1.28856 0.84946 0.77793 0.76277 0.78903 1.19318 1.20432 1.18066 1.23537 0.98500 1.01473 0.94541 1.21134 0.79214 0.84144 0.85163 1.90686 1.38738 1.28103 1.87074 1.45314 1.53055 1.32048 1.04119 1.21570 1.04089 0.98257 0.81331 1.23497 0.98375 0.99789 1.01282 1.23456 0.95622 1.03821 0.97940 0.90032 0.89743 0.92112 0.82555 0.88705 0.87611 0.74559 0.87052 0.86956 0.92033 0.89629 0.92404 0.74819 0.86975 0.87745 0.87835 0.87200 0.86955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 9.05 71.98 0.65 -0.23 16 2 C 0.07 0.80 2.85 44.17 0.13 0.92 16 3 H 0.11 1.09 7.84 -2.39 -0.02 1.07 16 4 N -0.67 -9.73 5.79 -470.62 -2.73 -12.46 16 5 C 0.08 1.03 3.71 45.44 0.17 1.20 16 6 H 0.10 0.91 7.49 -2.39 -0.02 0.89 16 7 C -0.13 -1.76 7.40 31.12 0.23 -1.53 16 8 C 0.11 2.47 4.32 45.52 0.20 2.67 16 9 H 0.08 2.21 7.46 -2.38 -0.02 2.19 16 10 N -0.69 -16.48 5.26 -440.04 -2.32 -18.80 16 11 C 0.54 19.42 7.85 87.66 0.69 20.11 16 12 O -0.57 -26.56 15.46 -3.04 -0.05 -26.60 16 13 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 14 S -0.16 -8.58 20.57 -56.49 -1.16 -9.75 16 15 C -0.55 -30.90 9.50 67.95 0.65 -30.25 16 16 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 17 C 0.01 0.72 5.49 84.86 0.47 1.19 16 18 N -0.91 -56.04 13.22 21.65 0.29 -55.76 16 19 Si 1.00 43.16 29.55 68.60 2.03 45.19 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 21 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 22 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 23 C -0.14 -2.92 7.68 31.12 0.24 -2.68 16 24 C 0.52 8.75 7.22 87.66 0.63 9.38 16 25 O -0.57 -15.45 16.00 -3.03 -0.05 -15.50 16 26 N -0.69 -7.55 5.46 -442.53 -2.42 -9.97 16 27 C 0.05 0.65 6.43 44.99 0.29 0.94 16 28 C -0.19 -1.60 10.46 30.62 0.32 -1.28 16 29 C -0.17 -1.08 10.46 30.62 0.32 -0.76 16 30 H 0.08 0.29 7.74 -2.39 -0.02 0.27 16 31 H 0.08 0.14 7.56 -2.39 -0.02 0.12 16 32 H 0.06 0.41 8.13 -2.39 -0.02 0.39 16 33 H 0.35 4.65 8.29 -89.69 -0.74 3.90 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.42 6.58 8.70 -92.71 -0.81 5.77 16 37 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 38 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 39 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 40 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.41 1.83 8.24 -92.70 -0.76 1.07 16 43 H 0.11 1.93 7.40 -2.39 -0.02 1.91 16 44 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 46 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -84.94 407.60 -2.30 -87.24 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -1.31 Total: 21.20 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 5.41 Total: -4.80 kcal Atomic # 7 Polarization: -89.81 SS G_CDS: -7.17 Total: -96.98 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -0.10 Total: -42.10 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.75 kcal Total: -84.94 -2.30 -87.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490871642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.726 kcal (2) G-P(sol) polarization free energy of solvation -84.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds