Wall clock time and date at job start Wed Apr 1 2020 00:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47056 * 2 1 4 4 C 1.50697 * 109.46875 * 120.00337 * 2 1 3 5 5 O 1.34751 * 126.44469 * 300.17855 * 4 2 1 6 6 C 1.33968 * 107.75474 * 180.27064 * 5 4 2 7 7 N 1.30258 * 108.76416 * 359.73736 * 6 5 4 8 8 C 1.34330 * 126.44237 * 120.00467 * 4 2 1 9 9 C 1.50698 * 126.16721 * 359.97438 * 8 4 2 10 10 N 1.46901 * 109.47270 * 269.72156 * 9 8 4 11 11 C 1.46902 * 111.00221 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.47263 * 34.99465 * 11 10 9 13 13 C 1.53006 * 109.46626 * 274.99771 * 11 10 9 14 14 C 1.52997 * 109.47489 * 154.99798 * 11 10 9 15 15 N 1.46498 * 109.47113 * 304.99985 * 14 11 10 16 16 C 1.34781 * 120.00367 * 180.02562 * 15 14 11 17 17 O 1.21280 * 119.99444 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00106 * 179.97438 * 16 15 14 19 19 S 1.80994 * 109.47054 * 179.97438 * 18 16 15 20 20 C 1.76202 * 100.00294 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99447 * 359.97438 * 20 19 18 22 22 C 1.38795 * 120.00171 * 180.02562 * 20 19 18 23 23 N 1.31623 * 120.00002 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 120.00014 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46837 * 90.00598 * 24 22 20 26 26 H 1.48493 * 109.47143 * 210.00351 * 24 22 20 27 27 H 1.48500 * 109.47092 * 330.00783 * 24 22 20 28 28 H 1.09007 * 109.47339 * 59.99764 * 1 2 3 29 29 H 1.08997 * 109.47357 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47091 * 299.99856 * 1 2 3 31 31 H 1.09001 * 109.47091 * 240.00144 * 2 1 3 32 32 H 1.08994 * 109.46976 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47220 * 300.00343 * 3 2 1 34 34 H 1.09001 * 109.47053 * 60.00121 * 3 2 1 35 35 H 1.08000 * 125.62065 * 179.70369 * 6 5 4 36 36 H 1.09001 * 109.47142 * 149.71763 * 9 8 4 37 37 H 1.08999 * 109.47305 * 29.72199 * 9 8 4 38 38 H 1.00903 * 111.00245 * 56.04234 * 10 9 8 39 39 H 1.09000 * 109.47050 * 299.99824 * 13 11 10 40 40 H 1.09001 * 109.46801 * 59.99937 * 13 11 10 41 41 H 1.09001 * 109.46998 * 179.97438 * 13 11 10 42 42 H 1.08998 * 109.47097 * 64.99382 * 14 11 10 43 43 H 1.09002 * 109.47223 * 184.99563 * 14 11 10 44 44 H 0.97004 * 120.00154 * 359.97438 * 15 14 11 45 45 H 1.08998 * 109.46839 * 299.99506 * 18 16 15 46 46 H 1.09000 * 109.46985 * 59.99712 * 18 16 15 47 47 H 0.97006 * 120.00023 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.7853 -0.3672 2.5098 6 6 2.4166 -1.2474 3.2981 7 7 3.0329 -2.1154 2.5475 8 6 2.8077 -1.8070 1.2580 9 6 3.3352 -2.5536 0.0599 10 7 2.3789 -3.6002 -0.3249 11 6 2.8612 -4.3509 -1.4918 12 1 3.9465 -4.4400 -1.4433 13 6 2.4669 -3.6118 -2.7722 14 6 2.2345 -5.7467 -1.4951 15 7 2.5122 -6.4096 -0.2186 16 6 2.0551 -7.6575 0.0063 17 8 1.4135 -8.2312 -0.8481 18 6 2.3413 -8.3396 1.3192 19 16 1.5998 -9.9907 1.3154 20 6 2.0746 -10.5431 2.9198 21 1 2.6540 -9.8978 3.5635 22 6 1.7049 -11.8078 3.3560 23 7 2.0601 -12.2206 4.5543 24 14 0.7034 -12.9242 2.2423 25 1 1.6200 -13.7491 1.4148 26 1 -0.1505 -13.8128 3.0706 27 1 -0.1552 -12.0980 1.3560 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.4153 -1.2385 4.3781 36 1 4.2930 -3.0103 0.3092 37 1 3.4685 -1.8603 -0.7705 38 1 1.4651 -3.2091 -0.4986 39 1 1.3816 -3.5227 -2.8207 40 1 2.9134 -2.6174 -2.7698 41 1 2.8252 -4.1685 -3.6381 42 1 1.1567 -5.6607 -1.6329 43 1 2.6592 -6.3337 -2.3094 44 1 3.0257 -5.9508 0.4646 45 1 3.4192 -8.4253 1.4567 46 1 1.9166 -7.7528 2.1336 47 1 1.8014 -13.1044 4.8592 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491399537.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:30 Heat of formation + Delta-G solvation = -28.104087 kcal Electronic energy + Delta-G solvation = -26928.096379 eV Core-core repulsion = 23045.409301 eV Total energy + Delta-G solvation = -3882.687078 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.68104 -39.27869 -37.82959 -36.22802 -35.33569 -33.76145 -32.36641 -31.69732 -29.60053 -29.10587 -27.75324 -26.19765 -25.58673 -25.24437 -23.84374 -21.77780 -21.28562 -20.53987 -20.16994 -17.83778 -17.52991 -16.97992 -16.39475 -16.20563 -15.99589 -15.81023 -15.41957 -14.99909 -14.88330 -14.74075 -14.23462 -14.08750 -13.77671 -13.72394 -13.28826 -13.17532 -12.88461 -12.78019 -12.76974 -12.71670 -12.47418 -12.12619 -11.97851 -11.83141 -11.70570 -11.58739 -11.42324 -11.21544 -11.18546 -10.94737 -10.67441 -10.50893 -9.78930 -9.37443 -9.11145 -8.93710 -8.79023 -8.71891 -8.40433 -6.82491 -6.21790 -3.92292 1.11938 2.33893 2.42028 2.89257 3.15943 3.37893 3.43604 3.56504 3.70033 3.81134 3.95495 4.08517 4.27248 4.39850 4.44990 4.47951 4.55266 4.65475 4.75366 4.86880 4.91018 4.98753 5.05280 5.07066 5.17182 5.22269 5.25046 5.28903 5.33356 5.36479 5.49039 5.53650 5.62457 5.63155 5.65460 5.69867 5.75400 5.86517 5.92705 5.97060 6.17403 6.55273 6.74589 6.97654 7.45759 7.88296 8.01636 8.49947 8.69489 9.24641 10.87541 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.002213 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.525312 B =12652.110087 C =13836.478174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.009 4.009 3 C -0.149 4.149 4 C -0.033 4.033 5 O -0.202 6.202 6 C 0.167 3.833 7 N -0.466 5.466 8 C -0.006 4.006 9 C 0.141 3.859 10 N -0.675 5.675 11 C 0.072 3.928 12 H 0.088 0.912 13 C -0.181 4.181 14 C 0.135 3.865 15 N -0.722 5.722 16 C 0.529 3.471 17 O -0.529 6.529 18 C -0.121 4.121 19 S -0.145 6.145 20 C -0.518 4.518 21 H 0.088 0.912 22 C 0.094 3.906 23 N -0.882 5.882 24 Si 0.857 3.143 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.249 0.751 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.344 0.656 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.406 0.594 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.563 31.873 -11.531 33.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 C -0.206 4.206 4 C -0.088 4.088 5 O -0.088 6.088 6 C -0.059 4.059 7 N -0.194 5.194 8 C -0.126 4.126 9 C 0.012 3.988 10 N -0.307 5.307 11 C -0.038 4.038 12 H 0.106 0.894 13 C -0.240 4.240 14 C 0.010 3.990 15 N -0.376 5.376 16 C 0.315 3.685 17 O -0.405 6.405 18 C -0.272 4.272 19 S 0.082 5.918 20 C -0.666 4.666 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.519 5.519 24 Si 0.682 3.318 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.265 0.735 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.163 0.837 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.241 0.759 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.076 29.850 -12.115 32.233 hybrid contribution 0.113 1.415 0.500 1.505 sum 1.190 31.265 -11.615 33.374 Atomic orbital electron populations 1.21888 0.93133 1.02877 1.02820 1.19751 0.96748 0.95981 0.90274 1.21878 1.01492 0.94438 1.02831 1.23163 1.02603 0.98818 0.84186 1.84409 1.58926 1.49147 1.16311 1.28084 0.93087 0.85768 0.98989 1.70374 1.21815 1.25381 1.01792 1.21268 1.02058 0.96039 0.93268 1.20164 0.96374 0.91731 0.90549 1.60446 1.05330 1.27533 1.37358 1.21863 1.00371 0.93235 0.88371 0.89412 1.22432 1.02272 1.00643 0.98655 1.21222 1.00393 0.90670 0.86720 1.45754 1.57772 1.15818 1.18268 1.20239 0.78591 0.80929 0.88741 1.90679 1.38948 1.64601 1.46226 1.23252 1.05187 1.01551 0.97219 1.84725 1.72010 1.11028 1.24085 1.22341 1.40431 1.04630 0.99213 0.89400 1.24718 0.94941 0.96932 0.94822 1.69945 1.44861 1.19618 1.17453 0.86726 0.81640 0.81909 0.81521 1.19261 1.20044 1.15916 0.91394 0.91910 0.91943 0.88375 0.92203 0.91392 0.91963 0.73479 0.88999 0.93503 0.83720 0.91887 0.92345 0.91249 0.91863 0.91350 0.75897 0.88684 0.88524 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.17 37.16 0.34 -0.41 16 2 C -0.01 -0.05 3.27 -91.77 -0.30 -0.35 16 3 C -0.15 -0.67 9.18 37.16 0.34 -0.33 16 4 C -0.03 -0.27 5.89 -35.69 -0.21 -0.48 16 5 O -0.20 -1.77 10.78 5.36 0.06 -1.71 16 6 C 0.17 1.41 13.23 52.09 0.69 2.10 16 7 N -0.47 -5.18 11.29 -11.18 -0.13 -5.31 16 8 C -0.01 -0.06 6.62 -82.81 -0.55 -0.61 16 9 C 0.14 1.06 5.67 -4.98 -0.03 1.04 16 10 N -0.67 -5.43 5.68 -107.99 -0.61 -6.05 16 11 C 0.07 0.53 2.75 -67.71 -0.19 0.35 16 12 H 0.09 0.63 7.80 -51.93 -0.40 0.22 16 13 C -0.18 -0.98 9.16 37.16 0.34 -0.64 16 14 C 0.14 1.51 5.37 -4.04 -0.02 1.49 16 15 N -0.72 -10.08 5.39 -60.30 -0.32 -10.41 16 16 C 0.53 10.04 7.85 -10.98 -0.09 9.96 16 17 O -0.53 -11.93 15.86 5.56 0.09 -11.85 16 18 C -0.12 -2.52 6.16 36.00 0.22 -2.30 16 19 S -0.14 -3.82 18.55 -107.50 -1.99 -5.82 16 20 C -0.52 -15.43 10.04 30.94 0.31 -15.12 16 21 H 0.09 2.73 8.03 -52.49 -0.42 2.31 16 22 C 0.09 2.83 5.50 -17.43 -0.10 2.73 16 23 N -0.88 -27.23 13.97 55.49 0.78 -26.45 16 24 Si 0.86 22.35 27.74 -169.99 -4.72 17.64 16 25 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.24 -6.13 6.74 56.52 0.38 -5.75 16 28 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.10 0.40 6.81 -51.93 -0.35 0.05 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.25 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.09 0.76 8.05 -51.93 -0.42 0.35 16 37 H 0.05 0.26 6.44 -51.93 -0.33 -0.08 16 38 H 0.34 2.64 8.47 -39.29 -0.33 2.31 16 39 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 40 H 0.06 0.25 7.45 -51.93 -0.39 -0.14 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.41 5.12 8.14 -40.82 -0.33 4.78 16 45 H 0.09 1.85 8.14 -51.92 -0.42 1.43 16 46 H 0.10 1.92 8.14 -51.92 -0.42 1.50 16 47 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 405.32 15.07 6.11 6.11 Total: -1.00 -36.99 405.32 -7.61 -44.61 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.64 Total: 1.81 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 0.77 Total: -2.57 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.29 Total: -48.22 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.15 Total: -13.56 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.72 Total: 17.64 kcal Atomic # 16 Polarization: -3.82 SS G_CDS: -1.99 Total: -5.82 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.99 -7.61 -44.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491399537.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.503 kcal (2) G-P(sol) polarization free energy of solvation -36.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds