Wall clock time and date at job start Wed Apr 1 2020 00:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47056 * 2 1 4 4 C 1.50697 * 109.46875 * 120.00337 * 2 1 3 5 5 O 1.34751 * 126.44469 * 300.17855 * 4 2 1 6 6 C 1.33968 * 107.75474 * 180.27064 * 5 4 2 7 7 N 1.30258 * 108.76416 * 359.73736 * 6 5 4 8 8 C 1.34330 * 126.44237 * 120.00467 * 4 2 1 9 9 C 1.50698 * 126.16721 * 359.97438 * 8 4 2 10 10 N 1.46901 * 109.47270 * 269.72156 * 9 8 4 11 11 C 1.46902 * 111.00221 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.47263 * 34.99465 * 11 10 9 13 13 C 1.53006 * 109.46626 * 274.99771 * 11 10 9 14 14 C 1.52997 * 109.47489 * 154.99798 * 11 10 9 15 15 N 1.46498 * 109.47113 * 304.99985 * 14 11 10 16 16 C 1.34781 * 120.00367 * 180.02562 * 15 14 11 17 17 O 1.21280 * 119.99444 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00106 * 179.97438 * 16 15 14 19 19 S 1.80994 * 109.47054 * 179.97438 * 18 16 15 20 20 C 1.76202 * 100.00294 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99447 * 359.97438 * 20 19 18 22 22 C 1.38795 * 120.00171 * 180.02562 * 20 19 18 23 23 N 1.31623 * 120.00002 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 120.00014 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46837 * 90.00598 * 24 22 20 26 26 H 1.48493 * 109.47143 * 210.00351 * 24 22 20 27 27 H 1.48500 * 109.47092 * 330.00783 * 24 22 20 28 28 H 1.09007 * 109.47339 * 59.99764 * 1 2 3 29 29 H 1.08997 * 109.47357 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47091 * 299.99856 * 1 2 3 31 31 H 1.09001 * 109.47091 * 240.00144 * 2 1 3 32 32 H 1.08994 * 109.46976 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47220 * 300.00343 * 3 2 1 34 34 H 1.09001 * 109.47053 * 60.00121 * 3 2 1 35 35 H 1.08000 * 125.62065 * 179.70369 * 6 5 4 36 36 H 1.09001 * 109.47142 * 149.71763 * 9 8 4 37 37 H 1.08999 * 109.47305 * 29.72199 * 9 8 4 38 38 H 1.00903 * 111.00245 * 56.04234 * 10 9 8 39 39 H 1.09000 * 109.47050 * 299.99824 * 13 11 10 40 40 H 1.09001 * 109.46801 * 59.99937 * 13 11 10 41 41 H 1.09001 * 109.46998 * 179.97438 * 13 11 10 42 42 H 1.08998 * 109.47097 * 64.99382 * 14 11 10 43 43 H 1.09002 * 109.47223 * 184.99563 * 14 11 10 44 44 H 0.97004 * 120.00154 * 359.97438 * 15 14 11 45 45 H 1.08998 * 109.46839 * 299.99506 * 18 16 15 46 46 H 1.09000 * 109.46985 * 59.99712 * 18 16 15 47 47 H 0.97006 * 120.00023 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.7853 -0.3672 2.5098 6 6 2.4166 -1.2474 3.2981 7 7 3.0329 -2.1154 2.5475 8 6 2.8077 -1.8070 1.2580 9 6 3.3352 -2.5536 0.0599 10 7 2.3789 -3.6002 -0.3249 11 6 2.8612 -4.3509 -1.4918 12 1 3.9465 -4.4400 -1.4433 13 6 2.4669 -3.6118 -2.7722 14 6 2.2345 -5.7467 -1.4951 15 7 2.5122 -6.4096 -0.2186 16 6 2.0551 -7.6575 0.0063 17 8 1.4135 -8.2312 -0.8481 18 6 2.3413 -8.3396 1.3192 19 16 1.5998 -9.9907 1.3154 20 6 2.0746 -10.5431 2.9198 21 1 2.6540 -9.8978 3.5635 22 6 1.7049 -11.8078 3.3560 23 7 2.0601 -12.2206 4.5543 24 14 0.7034 -12.9242 2.2423 25 1 1.6200 -13.7491 1.4148 26 1 -0.1505 -13.8128 3.0706 27 1 -0.1552 -12.0980 1.3560 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.4153 -1.2385 4.3781 36 1 4.2930 -3.0103 0.3092 37 1 3.4685 -1.8603 -0.7705 38 1 1.4651 -3.2091 -0.4986 39 1 1.3816 -3.5227 -2.8207 40 1 2.9134 -2.6174 -2.7698 41 1 2.8252 -4.1685 -3.6381 42 1 1.1567 -5.6607 -1.6329 43 1 2.6592 -6.3337 -2.3094 44 1 3.0257 -5.9508 0.4646 45 1 3.4192 -8.4253 1.4567 46 1 1.9166 -7.7528 2.1336 47 1 1.8014 -13.1044 4.8592 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491399537.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:29 Heat of formation + Delta-G solvation = -57.463995 kcal Electronic energy + Delta-G solvation = -26929.369520 eV Core-core repulsion = 23045.409301 eV Total energy + Delta-G solvation = -3883.960219 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.30348 -40.63424 -38.64272 -36.69238 -36.08005 -34.87256 -34.66527 -32.49165 -30.92567 -29.81501 -28.10610 -27.88925 -26.90261 -26.08700 -24.38963 -22.37519 -22.01124 -21.61606 -21.07149 -19.84330 -18.24118 -17.74023 -17.62161 -17.38298 -17.06747 -16.87413 -16.56678 -16.05504 -15.91634 -15.79260 -15.42291 -14.99365 -14.86761 -14.71763 -14.39152 -14.20020 -14.09105 -13.69124 -13.43561 -13.34776 -13.21989 -13.10947 -13.06326 -12.98639 -12.68700 -12.55583 -12.45324 -12.21523 -12.12780 -11.97196 -11.87799 -11.83260 -11.32327 -11.16757 -10.96584 -10.54031 -10.01478 -9.70061 -9.36264 -8.99030 -8.51118 -6.22000 0.52162 1.00027 1.31700 1.47510 1.57398 1.62619 1.68964 1.88169 2.25153 2.34791 2.73613 2.86657 3.14351 3.39238 3.60580 3.79735 3.85968 3.92830 3.98671 4.10058 4.13170 4.23342 4.29091 4.34486 4.47987 4.48857 4.55479 4.67762 4.72646 4.79429 4.81430 4.88924 4.90906 4.96174 4.98818 5.04238 5.15570 5.28457 5.29090 5.33343 5.37543 5.52252 5.71150 5.98773 6.11565 6.37620 6.57464 6.82813 6.93581 7.27164 8.61512 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.002213 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.525312 B =12652.110087 C =13836.478174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.008 4.008 3 C -0.146 4.146 4 C -0.033 4.033 5 O -0.210 6.210 6 C 0.166 3.834 7 N -0.509 5.509 8 C -0.028 4.028 9 C 0.147 3.853 10 N -0.688 5.688 11 C 0.084 3.916 12 H 0.095 0.905 13 C -0.174 4.174 14 C 0.131 3.869 15 N -0.698 5.698 16 C 0.532 3.468 17 O -0.568 6.568 18 C -0.110 4.110 19 S -0.172 6.172 20 C -0.530 4.530 21 H 0.059 0.941 22 C 0.044 3.956 23 N -0.917 5.917 24 Si 0.917 3.083 25 H -0.261 1.261 26 H -0.258 1.258 27 H -0.237 1.237 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.115 0.885 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.281 0.719 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.347 0.653 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.415 0.585 45 H 0.109 0.891 46 H 0.105 0.895 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.402 33.613 -13.412 36.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.026 4.026 3 C -0.203 4.203 4 C -0.087 4.087 5 O -0.097 6.097 6 C -0.060 4.060 7 N -0.238 5.238 8 C -0.147 4.147 9 C 0.019 3.981 10 N -0.320 5.320 11 C -0.026 4.026 12 H 0.114 0.886 13 C -0.233 4.233 14 C 0.007 3.993 15 N -0.351 5.351 16 C 0.317 3.683 17 O -0.447 6.447 18 C -0.261 4.261 19 S 0.055 5.945 20 C -0.678 4.678 21 H 0.077 0.923 22 C -0.161 4.161 23 N -0.555 5.555 24 Si 0.739 3.261 25 H -0.185 1.185 26 H -0.182 1.182 27 H -0.161 1.161 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.133 0.867 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.296 0.704 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.166 0.834 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.252 0.748 45 H 0.127 0.873 46 H 0.123 0.877 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.941 31.642 -13.991 34.610 hybrid contribution 0.230 1.044 1.136 1.560 sum 1.171 32.686 -12.855 35.142 Atomic orbital electron populations 1.21870 0.92957 1.02432 1.03207 1.19917 0.96810 0.96367 0.89517 1.21861 1.01331 0.93902 1.03243 1.23685 1.01854 0.98515 0.84632 1.84424 1.59060 1.49353 1.16857 1.28832 0.92032 0.84976 1.00158 1.70354 1.23421 1.26944 1.03058 1.21591 1.02965 0.96904 0.93277 1.20144 0.95445 0.91828 0.90728 1.60352 1.05720 1.28185 1.37785 1.21735 1.00317 0.91099 0.89449 0.88648 1.22374 1.02530 1.01226 0.97205 1.21479 1.00346 0.92621 0.84883 1.45613 1.55943 1.14001 1.19520 1.19884 0.78698 0.82193 0.87477 1.90666 1.41125 1.65873 1.47079 1.23246 1.05544 0.98252 0.99077 1.84601 1.72985 1.15226 1.21710 1.22469 1.40107 1.04662 1.00529 0.92262 1.25603 0.95961 0.98366 0.96218 1.70022 1.46004 1.20528 1.18978 0.85831 0.80388 0.80090 0.79824 1.18534 1.18196 1.16109 0.89543 0.92743 0.93033 0.86678 0.92409 0.89582 0.92965 0.70415 0.89998 0.90966 0.83417 0.91763 0.90481 0.90989 0.92660 0.91403 0.74834 0.87296 0.87685 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.17 71.98 0.66 -0.57 16 2 C -0.01 -0.06 3.27 -11.54 -0.04 -0.10 16 3 C -0.15 -1.02 9.18 71.98 0.66 -0.35 16 4 C -0.03 -0.49 5.89 24.79 0.15 -0.34 16 5 O -0.21 -3.56 10.78 -3.73 -0.04 -3.60 16 6 C 0.17 2.71 13.23 130.48 1.73 4.43 16 7 N -0.51 -11.14 11.29 -304.06 -3.43 -14.58 16 8 C -0.03 -0.50 6.62 41.26 0.27 -0.23 16 9 C 0.15 1.95 5.67 85.56 0.49 2.44 16 10 N -0.69 -9.74 5.68 -495.57 -2.81 -12.55 16 11 C 0.08 1.05 2.75 44.92 0.12 1.17 16 12 H 0.10 1.10 7.80 -2.39 -0.02 1.08 16 13 C -0.17 -1.34 9.16 71.98 0.66 -0.69 16 14 C 0.13 2.72 5.37 86.38 0.46 3.18 16 15 N -0.70 -18.55 5.39 -463.07 -2.50 -21.04 16 16 C 0.53 19.78 7.85 87.66 0.69 20.47 16 17 O -0.57 -25.40 15.86 -3.03 -0.05 -25.45 16 18 C -0.11 -4.53 6.16 71.24 0.44 -4.09 16 19 S -0.17 -9.08 18.55 -56.49 -1.05 -10.13 16 20 C -0.53 -32.07 10.04 67.95 0.68 -31.39 16 21 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 22 C 0.04 2.64 5.50 84.86 0.47 3.11 16 23 N -0.92 -57.22 13.97 21.65 0.30 -56.92 16 24 Si 0.92 46.17 27.74 68.60 1.90 48.07 16 25 H -0.26 -12.74 7.11 99.48 0.71 -12.04 16 26 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 27 H -0.24 -11.94 6.74 99.48 0.67 -11.27 16 28 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.12 0.58 6.81 -2.39 -0.02 0.56 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.28 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.08 1.25 8.05 -2.39 -0.02 1.23 16 37 H 0.07 0.57 6.44 -2.39 -0.02 0.55 16 38 H 0.35 4.62 8.47 -89.69 -0.76 3.86 16 39 H 0.06 0.51 8.13 -2.39 -0.02 0.49 16 40 H 0.08 0.35 7.45 -2.39 -0.02 0.34 16 41 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.41 9.78 8.14 -92.71 -0.75 9.03 16 45 H 0.11 4.17 8.14 -2.40 -0.02 4.15 16 46 H 0.10 4.14 8.14 -2.40 -0.02 4.12 16 47 H 0.28 15.93 8.31 -92.70 -0.77 15.16 16 Total: -1.00 -80.94 405.32 -0.81 -81.75 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -0.57 Total: 17.42 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 7.44 Total: -2.96 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -8.44 Total: -105.10 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.09 Total: -29.05 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.90 Total: 48.07 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.05 Total: -10.13 kcal Total: -80.94 -0.81 -81.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491399537.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.286 kcal (2) G-P(sol) polarization free energy of solvation -80.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds